Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0012094

Physical Location & Seq

Genomic Coordinates Reverse (-)

9609448 .. 9613147

Gene Structure 3700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g15470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1662 bp

ATGGCGGAAGGAGCTTCATTCTTGTTCGGCGGCATTCACTTCAACCGGAGGAAGTTCGCCACTGACTTTTCCCGATTCGAGGCGAAGAAGAAAGAGACAAACGATTCAAACATGGTCGAAGAGCAGGAGAAGGAGGAAGAGCCAGTGAGAGTGTCTGTTAAGAAGAGGAAGAGGAAGACTGATGTTTCAGAGTCTGGGGATGGAATCAGTCTTTTTAAGAAGTCAAAATCAGCGAAGGCAGCTAAGAAGGAGAAAGAGAAGCCTGCTAATGAACGCGCTAAGCAGAGAAAGAAACTTAATAAACAACTTGAGCGGGATTCGTTACTCCGAAAGAAGCATAATGTGCATGTCTCAGGGAATAATATCCCATCCCCTCTTGAGAATTTTTCGGAGTTGAGATCAAGACTTGGATGTGAAGAGTATTTACTTCGTAATTTGGCAGAGCTTGGATTTGAAGAGCCAACACCAATCCAACGGCAGGCTATTCCAGTCCTCTTATCTGGTAGGGAATGCTTTGCTTGTGCTCCAACTGGGTCTGGAAAAACCCTTGCTTTTGTGGTTCCCATGCTTATGAAACTCAAGCATGCATCTAAGGATGGCGTTCGAGCGGTGATTCTTTGTCCTACACGTGAACTAGCGGCTCAGACAACCAGAGAGTGCAAAAAGTTGTCAAAAGGCAATAAATTTTACATTAAGTTGATGACTAAGGAGCTTGTTAGAAGTGCTGATTTTTCAAAAGACCCTTGTGATGTACTCATATCTACTCCACAACGGTTACGGATGGCTATTCGAAAAAAGAAGCTCAATTTAAGCAGGGTGGAATATCTTGTCTTAGATGAGTCTGATAAGCTCTTTGAGCTTGGCCTATTAAAACAGATTGATTCTGTGGTGAAAGCATGCTCCAACCCTTCAGTCGTTCGCTCTTTGTTTAGTGCTACTTTACCTGATTTTGTTGAGGAGCTTGCACGTACTATAATGCATGATGCTGTTCGAGTTATCATTGGCAGGAAAAATACTGCTTCTGAGACTATCAAGCAAAAATTGGTATATGCTGGAAGTGAACAAGGGAAATTTATGGCTCTTCGACAAAGCTTTACAGAGAGTCTAAATCCACCAGTTTTGATCTTTGTACAAAGCAAAGAGCGAGCGAAGGAACTCTACGGAGAGCTTTTATGTGAGAATATAAGAGCTGGTGCGATCCATTCTGATATGTCCCAATCTGAGCGAGAAAATGCTGTTGACGACTTCAGAGCTGGAAAAACATGGGTTTTGATTGCCACCGATGTTATTGCTAGGGGTATGGATTTCAAAGGCATCAACTGTGTGATTAATTATGATTTTCCAGATTCTTCTGCTGCCTACATTCACCGGATTGGTCGCTGTGGCAGAGCGGGGAGGAGTGGAGAAGCGATTACTTTCTATACAGATGAAGATATTCCATTTTTACGGAATATAGCTAATGTTATGGTGTCATCAGGTTGTGAGGTTCCATCTTGGATCATGGTCTTGCCCAAAAAGAAGTGGAGAAAGCACAGACCTGGAAGAGGAGGGTCGGTTTTAGCTGGACCAAAAGATGAAGTAAAAAAGAAGTGGACAAAGAAGAAAGCAAAAAAATCTCAGAAGACAAACTTAAATGATGAATCGAAAGATGAGCAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

554

Amino Acids

62.38

Weight (kDa)

9.65

Isoelectric Point (pI)

46.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	155 - 320	4.6e-39	DEAD/DEAH box helicase
ResIII	PF04851	158 - 302	4e-10	Type III restriction enzyme, res subunit
Helicase_C	PF00271	357 - 465	3.1e-32	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09720 AT3G09720
fragaria_vesca	FvH4_6g15470
malus_domestica	MD04G1103000.v1.1 MD12G1123200.v1.1
prunus_persica	Prupe.6G240000_v2.0.a1 Prupe.6G240000_v2.0.a1
pyrus_communis	pycom04g09810 pycom12g12190
rosa_chinensis	RchiOBHm_Chr3g0468951
rosa_laevigata	RLG00000024397
rosa_multiflora	Rmu_co8069278.1_g000001 Rmu_co8291353.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412430
rosa_rugosa	Rorug03G0097800
rosa_samantha	Rh3AG147400 Rh3BG170000 Rh3DG205000
rosa_wichuraiana	Rw3G013880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	313, 608, 1391
AccII	CGCG	1 cut(s)	276
AciI	CCGC	6 cut(s)	5, 30, 313, 608, 638, 1391
AclWI	GGATC	2 cut(s)	1192, 1505
AcsI	RAATTY	3 cut(s)	382, 683, 1070
AcuI	CTGAAG	2 cut(s)	894, 1231
AcvI	CACGTG	1 cut(s)	629
AfaI	GTAC	3 cut(s)	753, 970, 1131
AfiI	CCNNNNNNNGG	3 cut(s)	79, 478, 1544
AflIII	ACRYGT	1 cut(s)	626
AgsI	TTSAA	5 cut(s)	43, 108, 455, 735, 1309
AjnI	CCWGG	1 cut(s)	1537
Alw21I	GWGCWC	1 cut(s)	526
Alw26I	GTCTC	3 cut(s)	89, 355, 1019
AlwI	GGATC	2 cut(s)	1192, 1505
AlwNI	CAGNNNCTG	1 cut(s)	194
AoxI	GGCC	1 cut(s)	862
ApeKI	GCWGC	2 cut(s)	239, 1355
ApoI	RAATTY	3 cut(s)	382, 683, 1070
AseI	ATTAAT	1 cut(s)	1329
Asp700I	GAANNNNTTC	1 cut(s)	1434
AspLEI	GCGC	1 cut(s)	278
AspS9I	GGNCC	1 cut(s)	1565
AsuHPI	GGTGA	3 cut(s)	622, 901, 1358
AsuII	TTCGAA	1 cut(s)	790
AvaII	GGWCC	1 cut(s)	1565
BarI	GAAGNNNNNNTAC	4 cut(s)	408, 440, 1142, 1174
BbrPI	CACGTG	1 cut(s)	629
BbsI	GAAGAC	2 cut(s)	182, 1628
Bbv12I	GWGCWC	1 cut(s)	526
BbvI	GCAGC	2 cut(s)	251, 1342
BccI	CCATC	5 cut(s)	194, 376, 590, 775, 1498
BceAI	ACGGC	1 cut(s)	491
BcgI	CGANNNNNNTGC	2 cut(s)	1271, 1305
BciT130I	CCWGG	1 cut(s)	1539
BcoDI	GTCTC	3 cut(s)	89, 355, 1019
BfaI	CTAG	2 cut(s)	635, 1293
BisI	GCNGC	4 cut(s)	31, 240, 639, 1356
BlpI	GCTNAGC	1 cut(s)	279
BlsI	GCNGC	4 cut(s)	32, 241, 640, 1357
Bme1390I	CCNGG	1 cut(s)	1539
Bme18I	GGWCC	1 cut(s)	1565
BmgT120I	GGNCC	1 cut(s)	1565
BmiI	GGNNCC	2 cut(s)	561, 1488
BmrFI	CCNGG	1 cut(s)	1539
BmrI	ACTGGG	1 cut(s)	540
BmsI	GCATC	3 cut(s)	596, 973, 1323
BmuI	ACTGGG	1 cut(s)	540
BpiI	GAAGAC	2 cut(s)	182, 1628
Bpu1102I	GCTNAGC	1 cut(s)	279
Bpu14I	TTCGAA	1 cut(s)	790
BpuEI	CTTGAG	3 cut(s)	329, 398, 563
BsaAI	YACGTR	2 cut(s)	629, 968
BsaWI	WCCGGW	2 cut(s)	45, 1368
BsaXI	ACNNNNNCTCC	2 cut(s)	1539, 1569
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 478, 1544
Bse1I	ACTGG	4 cut(s)	143, 488, 535, 1115
BseBI	CCWGG	1 cut(s)	1539
BseGI	GGATG	5 cut(s)	205, 368, 416, 601, 786
BseLI	CCNNNNNNNGG	3 cut(s)	79, 478, 1544
BseMII	CTCAG	5 cut(s)	366, 656, 1014, 1212, 1631
BseNI	ACTGG	4 cut(s)	143, 488, 535, 1115
BseRI	GAGGAG	3 cut(s)	971, 1411, 1560
BseXI	GCAGC	2 cut(s)	251, 1342
Bsh1236I	CGCG	1 cut(s)	276
BshFI	GGCC	1 cut(s)	864
BsiHKAI	GWGCWC	1 cut(s)	526
BsiSI	CCGG	2 cut(s)	46, 1369
BslFI	GGGAC	1 cut(s)	1198
BslI	CCNNNNNNNGG	3 cut(s)	79, 478, 1544
BsmAI	GTCTC	3 cut(s)	89, 355, 1019
BsmFI	GGGAC	1 cut(s)	1198
BsmI	GAATGC	2 cut(s)	33, 515
BsnI	GGCC	1 cut(s)	864
Bsp119I	TTCGAA	1 cut(s)	790
Bsp1286I	GDGCHC	1 cut(s)	526
Bsp1407I	TGTACA	1 cut(s)	1129
Bsp143I	GATC	4 cut(s)	398, 1122, 1197, 1497
Bsp1720I	GCTNAGC	1 cut(s)	279
BspACI	CCGC	6 cut(s)	5, 30, 313, 608, 638, 1391
BspANI	GGCC	1 cut(s)	864
BspCNI	CTCAG	5 cut(s)	365, 655, 1015, 1213, 1630
BspFNI	CGCG	1 cut(s)	276
BspLI	GGNNCC	2 cut(s)	561, 1488
BspPI	GGATC	2 cut(s)	1192, 1505
BspQI	GCTCTTC	4 cut(s)	114, 132, 450, 1086
BspT104I	TTCGAA	1 cut(s)	790
BsrBI	CCGCTC	3 cut(s)	313, 608, 1391
BsrGI	TGTACA	1 cut(s)	1129
BsrI	ACTGG	4 cut(s)	143, 488, 535, 1115
BssMI	GATC	4 cut(s)	398, 1122, 1197, 1497
Bst2UI	CCWGG	1 cut(s)	1539
Bst4CI	ACNGT	2 cut(s)	774, 1322
Bst6I	CTCTTC	8 cut(s)	114, 132, 158, 164, 411, 450, 1086, 1537
BstAPI	GCANNNNNTGC	1 cut(s)	343
BstAUI	TGTACA	1 cut(s)	1129
BstBAI	YACGTR	2 cut(s)	629, 968
BstBI	TTCGAA	1 cut(s)	790
BstC8I	GCNNGC	6 cut(s)	264, 480, 585, 898, 963, 1146
BstENI	CCTNNNNNAGG	1 cut(s)	1542
BstF5I	GGATG	5 cut(s)	205, 368, 416, 601, 786
BstFNI	CGCG	1 cut(s)	276
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	4 cut(s)	401, 1125, 1200, 1500
BstMAI	GTCTC	3 cut(s)	89, 355, 1019
BstMBI	GATC	4 cut(s)	398, 1122, 1197, 1497
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 239, 343, 856
BstNI	CCWGG	1 cut(s)	1539
BstNSI	RCATGY	3 cut(s)	350, 587, 900
BstSCI	CCNGG	1 cut(s)	1537
BstUI	CGCG	1 cut(s)	276
BstV1I	GCAGC	2 cut(s)	251, 1342
BstV2I	GAAGAC	2 cut(s)	182, 1628
BsuRI	GGCC	1 cut(s)	864
BtsCI	GGATG	5 cut(s)	205, 368, 416, 601, 786
BtsIMutI	CAGTG	2 cut(s)	60, 150
Cac8I	GCNNGC	6 cut(s)	264, 480, 585, 898, 963, 1146
CaiI	CAGNNNCTG	1 cut(s)	194
CfoI	GCGC	1 cut(s)	278
Cfr13I	GGNCC	1 cut(s)	1565
Csp6I	GTAC	3 cut(s)	752, 969, 1130
CspCI	CAANNNNNGTGG	2 cut(s)	1101, 1136
CviAII	CATG	8 cut(s)	112, 347, 565, 584, 897, 980, 1263, 1501
CviQI	GTAC	3 cut(s)	752, 969, 1130
DpnI	GATC	4 cut(s)	400, 1124, 1199, 1499
DpnII	GATC	4 cut(s)	398, 1122, 1197, 1497
Eam1104I	CTCTTC	8 cut(s)	114, 132, 158, 164, 411, 450, 1086, 1537
EarI	CTCTTC	8 cut(s)	114, 132, 158, 164, 411, 450, 1086, 1537
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	1565
Eco57I	CTGAAG	2 cut(s)	894, 1231
Eco72I	CACGTG	1 cut(s)	629
EcoNI	CCTNNNNNAGG	1 cut(s)	1542
EcoRII	CCWGG	1 cut(s)	1537
EcoT22I	ATGCAT	2 cut(s)	589, 981
FaeI	CATG	8 cut(s)	115, 350, 568, 587, 900, 983, 1266, 1504
FalI	AAGNNNNNCTT	2 cut(s)	1613, 1645
FaqI	GGGAC	1 cut(s)	1198
FatI	CATG	8 cut(s)	111, 346, 564, 583, 896, 979, 1262, 1500
FauI	CCCGC	2 cut(s)	306, 1384
Fnu4HI	GCNGC	4 cut(s)	31, 240, 639, 1356
FokI	GGATG	5 cut(s)	212, 355, 423, 608, 793
Fsp4HI	GCNGC	4 cut(s)	31, 240, 639, 1356
FspBI	CTAG	2 cut(s)	635, 1293
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	4 cut(s)	31, 240, 639, 1356
HaeIII	GGCC	1 cut(s)	864
HapII	CCGG	2 cut(s)	46, 1369
HhaI	GCGC	1 cut(s)	278
Hin1II	CATG	8 cut(s)	115, 350, 568, 587, 900, 983, 1266, 1504
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HincII	GTYRAC	1 cut(s)	1240
HindII	GTYRAC	1 cut(s)	1240
HindIII	AAGCTT	1 cut(s)	1090
HpaII	CCGG	2 cut(s)	46, 1369
HphI	GGTGA	3 cut(s)	622, 901, 1358
Hpy166II	GTNNAC	4 cut(s)	632, 1061, 1240, 1593
Hpy188III	TCNNGA	5 cut(s)	72, 377, 402, 537, 1343
Hpy8I	GTNNAC	4 cut(s)	632, 1061, 1240, 1593
HpyAV	CCTTC	5 cut(s)	124, 229, 241, 918, 1144
HpyCH4III	ACNGT	2 cut(s)	774, 1322
HpyCH4IV	ACGT	2 cut(s)	628, 967
HpyCH4V	TGCA	5 cut(s)	346, 587, 660, 965, 979
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 239, 343, 856
HpySE526I	ACGT	2 cut(s)	628, 967
Hsp92II	CATG	8 cut(s)	115, 350, 568, 587, 900, 983, 1266, 1504
HspAI	GCGC	1 cut(s)	276
Kzo9I	GATC	4 cut(s)	398, 1122, 1197, 1497
LguI	GCTCTTC	4 cut(s)	114, 132, 450, 1086
LmnI	GCTCC	5 cut(s)	11, 529, 709, 905, 958
Lsp1109I	GCAGC	2 cut(s)	251, 1342
LweI	GCATC	3 cut(s)	596, 973, 1323
MaeI	CTAG	2 cut(s)	635, 1293
MaeII	ACGT	2 cut(s)	628, 967
MaeIII	GTNAC	2 cut(s)	321, 774
MalI	GATC	4 cut(s)	400, 1124, 1199, 1499
MbiI	CCGCTC	3 cut(s)	313, 608, 1391
MboI	GATC	4 cut(s)	398, 1122, 1197, 1497
MhlI	GDGCHC	1 cut(s)	526
MluCI	AATT	7 cut(s)	382, 433, 683, 805, 1040, 1070, 1330
MlyI	GAGTC	3 cut(s)	200, 848, 1111
MmeI	TCCRAC	3 cut(s)	496, 551, 927
Mph1103I	ATGCAT	2 cut(s)	589, 981
MroXI	GAANNNNTTC	1 cut(s)	1434
MseI	TTAA	8 cut(s)	159, 216, 297, 693, 809, 869, 1329, 1631
MslI	CAYNNNNRTG	1 cut(s)	569
MspI	CCGG	2 cut(s)	46, 1369
MspR9I	CCNGG	1 cut(s)	1539
Mva1269I	GAATGC	2 cut(s)	33, 515
MvaI	CCWGG	1 cut(s)	1539
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	4 cut(s)	11, 239, 343, 856
NdeII	GATC	4 cut(s)	398, 1122, 1197, 1497
NlaIII	CATG	8 cut(s)	115, 350, 568, 587, 900, 983, 1266, 1504
NlaIV	GGNNCC	2 cut(s)	561, 1488
NsiI	ATGCAT	2 cut(s)	589, 981
NspI	RCATGY	3 cut(s)	350, 587, 900
NspV	TTCGAA	1 cut(s)	790
PaeI	GCATGC	2 cut(s)	587, 900
PciSI	GCTCTTC	4 cut(s)	114, 132, 450, 1086
PctI	GAATGC	2 cut(s)	33, 515
PdmI	GAANNNNTTC	1 cut(s)	1434
PfeI	GAWTC	8 cut(s)	75, 104, 204, 317, 613, 881, 1346, 1640
PkrI	GCNGC	4 cut(s)	32, 241, 640, 1357
PleI	GAGTC	3 cut(s)	199, 847, 1110
PmaCI	CACGTG	1 cut(s)	629
PmlI	CACGTG	1 cut(s)	629
PpsI	GAGTC	3 cut(s)	199, 847, 1110
Ppu21I	YACGTR	2 cut(s)	629, 968
PshBI	ATTAAT	1 cut(s)	1329
Psp6I	CCWGG	1 cut(s)	1537
PspCI	CACGTG	1 cut(s)	629
PspGI	CCWGG	1 cut(s)	1537
PspN4I	GGNNCC	2 cut(s)	561, 1488
PspPI	GGNCC	1 cut(s)	1565
PstNI	CAGNNNCTG	1 cut(s)	194
RsaI	GTAC	3 cut(s)	753, 970, 1131
RsaNI	GTAC	3 cut(s)	752, 969, 1130
RseI	CAYNNNNRTG	1 cut(s)	569
SapI	GCTCTTC	4 cut(s)	114, 132, 450, 1086
SaqAI	TTAA	8 cut(s)	159, 216, 297, 693, 809, 869, 1329, 1631
SatI	GCNGC	4 cut(s)	31, 240, 639, 1356
Sau3AI	GATC	4 cut(s)	398, 1122, 1197, 1497
Sau96I	GGNCC	1 cut(s)	1565
SchI	GAGTC	3 cut(s)	200, 848, 1111
ScrFI	CCNGG	1 cut(s)	1539
SduI	GDGCHC	1 cut(s)	526
SfaNI	GCATC	3 cut(s)	596, 973, 1323
SfuI	TTCGAA	1 cut(s)	790
SinI	GGWCC	1 cut(s)	1565
SmiMI	CAYNNNNRTG	1 cut(s)	569
SmlI	CTYRAG	3 cut(s)	308, 377, 578
SmoI	CTYRAG	3 cut(s)	308, 377, 578
SphI	GCATGC	2 cut(s)	587, 900
Sse9I	AATT	7 cut(s)	382, 433, 683, 805, 1040, 1070, 1330
SsiI	CCGC	6 cut(s)	5, 30, 313, 608, 638, 1391
SspMI	CTAG	2 cut(s)	635, 1293
StyD4I	CCNGG	1 cut(s)	1537
TaaI	ACNGT	2 cut(s)	774, 1322
TaiI	ACGT	2 cut(s)	631, 970
TaqI	TCGA	7 cut(s)	78, 117, 604, 790, 991, 1084, 1643
TasI	AATT	7 cut(s)	382, 433, 683, 805, 1040, 1070, 1330
TatI	WGTACW	2 cut(s)	751, 1129
TauI	GCSGC	2 cut(s)	33, 641
TfiI	GAWTC	8 cut(s)	75, 104, 204, 317, 613, 881, 1346, 1640
Tru1I	TTAA	8 cut(s)	159, 216, 297, 693, 809, 869, 1329, 1631
Tru9I	TTAA	8 cut(s)	159, 216, 297, 693, 809, 869, 1329, 1631
TscAI	CASTG	2 cut(s)	67, 150
TseI	GCWGC	2 cut(s)	239, 1355
TspDTI	ATGAA	6 cut(s)	6, 285, 587, 1443, 1590, 1653
TspGWI	ACGGA	3 cut(s)	793, 1176, 1462
TspRI	CASTG	2 cut(s)	67, 150
VpaK11BI	GGWCC	1 cut(s)	1565
VspI	ATTAAT	1 cut(s)	1329
XagI	CCTNNNNNAGG	1 cut(s)	1542
XapI	RAATTY	3 cut(s)	382, 683, 1070
XceI	RCATGY	3 cut(s)	350, 587, 900
XmnI	GAANNNNTTC	1 cut(s)	1434
XspI	CTAG	2 cut(s)	635, 1293
Zsp2I	ATGCAT	2 cut(s)	589, 981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.