DEAD-box ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G09720 AT3G09720 |
| fragaria_vesca | FvH4_6g15470 |
| malus_domestica | MD04G1103000.v1.1 MD12G1123200.v1.1 |
| prunus_persica | Prupe.6G240000_v2.0.a1 Prupe.6G240000_v2.0.a1 |
| pyrus_communis | pycom04g09810 pycom12g12190 |
| rosa_chinensis | RchiOBHm_Chr3g0468951 |
| rosa_laevigata | RLG00000024397 |
| rosa_multiflora | Rmu_co8069278.1_g000001 Rmu_co8291353.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00412430 |
| rosa_rugosa | Rorug03G0097800 |
| rosa_samantha | Rh3AG147400 Rh3BG170000 Rh3DG205000 |
| rosa_wichuraiana | Rw3G013880 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1541 |
| AccB1I | GGYRCC | 1 cut(s) | 181 |
| AccI | GTMKAC | 1 cut(s) | 1722 |
| AccIII | TCCGGA | 1 cut(s) | 819 |
| AciI | CCGC | 4 cut(s) | 202, 209, 404, 1500 |
| AclWI | GGATC | 3 cut(s) | 372, 571, 945 |
| AcoI | YGGCCR | 1 cut(s) | 532 |
| AcsI | RAATTY | 3 cut(s) | 412, 713, 751 |
| AcuI | CTGAAG | 2 cut(s) | 162, 1261 |
| AcvI | CACGTG | 1 cut(s) | 659 |
| AcyI | GRCGYC | 1 cut(s) | 33 |
| AfaI | GTAC | 1 cut(s) | 1161 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 230, 508 |
| AflII | CTTAAG | 1 cut(s) | 608 |
| AflIII | ACRYGT | 1 cut(s) | 656 |
| AgsI | TTSAA | 8 cut(s) | 43, 128, 302, 765, 933, 942, 986, 1339 |
| Alw21I | GWGCWC | 1 cut(s) | 556 |
| Alw26I | GTCTC | 1 cut(s) | 1049 |
| AlwI | GGATC | 3 cut(s) | 372, 571, 945 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 566, 1379 |
| Aor13HI | TCCGGA | 1 cut(s) | 819 |
| AoxI | GGCC | 3 cut(s) | 532, 1527, 1533 |
| ApeKI | GCWGC | 3 cut(s) | 269, 1382, 1385 |
| ApoI | RAATTY | 3 cut(s) | 412, 713, 751 |
| AseI | ATTAAT | 1 cut(s) | 1359 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 53 |
| AspLEI | GCGC | 1 cut(s) | 1542 |
| AspS9I | GGNCC | 1 cut(s) | 1527 |
| AsuC2I | CCSGG | 3 cut(s) | 385, 536, 1569 |
| BanI | GGYRCC | 1 cut(s) | 181 |
| BauI | CACGAG | 1 cut(s) | 1323 |
| BbrPI | CACGTG | 1 cut(s) | 659 |
| Bbv12I | GWGCWC | 1 cut(s) | 556 |
| BbvI | GCAGC | 3 cut(s) | 281, 1369, 1372 |
| BccI | CCATC | 2 cut(s) | 620, 691 |
| BceAI | ACGGC | 1 cut(s) | 44 |
| BciVI | GTATCC | 1 cut(s) | 226 |
| BclI | TGATCA | 1 cut(s) | 670 |
| BcnI | CCSGG | 3 cut(s) | 385, 536, 1569 |
| BcoDI | GTCTC | 1 cut(s) | 1049 |
| BfaI | CTAG | 1 cut(s) | 1718 |
| BfrI | CTTAAG | 1 cut(s) | 608 |
| BfuI | GTATCC | 1 cut(s) | 226 |
| BisI | GCNGC | 4 cut(s) | 270, 404, 1383, 1386 |
| BlsI | GCNGC | 4 cut(s) | 271, 405, 1384, 1387 |
| Bme1390I | CCNGG | 3 cut(s) | 385, 536, 1569 |
| BmgT120I | GGNCC | 1 cut(s) | 1527 |
| BmiI | GGNNCC | 3 cut(s) | 174, 183, 1518 |
| BmrFI | CCNGG | 3 cut(s) | 385, 536, 1569 |
| BmsI | GCATC | 4 cut(s) | 626, 639, 1003, 1511 |
| BpmI | CTGGAG | 1 cut(s) | 55 |
| Bpu10I | CCTNAGC | 2 cut(s) | 264, 1179 |
| BpuEI | CTTGAG | 3 cut(s) | 359, 415, 428 |
| BpuMI | CCSGG | 3 cut(s) | 385, 536, 1569 |
| BsaAI | YACGTR | 1 cut(s) | 659 |
| BsaBI | GATNNNNATC | 1 cut(s) | 445 |
| BsaHI | GRCGYC | 1 cut(s) | 33 |
| BsaJI | CCNNGG | 1 cut(s) | 1530 |
| BsaWI | WCCGGW | 2 cut(s) | 45, 819 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 230, 508 |
| Bse118I | RCCGGY | 1 cut(s) | 29 |
| Bse1I | ACTGG | 4 cut(s) | 176, 518, 1077, 1145 |
| Bse8I | GATNNNNATC | 1 cut(s) | 445 |
| BseAI | TCCGGA | 1 cut(s) | 819 |
| BseDI | CCNNGG | 1 cut(s) | 1530 |
| BseGI | GGATG | 4 cut(s) | 446, 630, 631, 871 |
| BseJI | GATNNNNATC | 1 cut(s) | 445 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 230, 508 |
| BseNI | ACTGG | 4 cut(s) | 176, 518, 1077, 1145 |
| BseRI | GAGGAG | 5 cut(s) | 170, 173, 182, 185, 1441 |
| BseXI | GCAGC | 3 cut(s) | 281, 1369, 1372 |
| BshFI | GGCC | 3 cut(s) | 534, 1529, 1535 |
| BshNI | GGYRCC | 1 cut(s) | 181 |
| BsiHKAI | GWGCWC | 1 cut(s) | 556 |
| BsiSI | CCGG | 6 cut(s) | 30, 46, 384, 535, 820, 1569 |
| BslFI | GGGAC | 1 cut(s) | 1551 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 230, 508 |
| BsmAI | GTCTC | 1 cut(s) | 1049 |
| BsmFI | GGGAC | 1 cut(s) | 1551 |
| BsmI | GAATGC | 1 cut(s) | 545 |
| BsnI | GGCC | 3 cut(s) | 534, 1529, 1535 |
| Bsp1286I | GDGCHC | 1 cut(s) | 556 |
| Bsp13I | TCCGGA | 1 cut(s) | 819 |
| Bsp1407I | TGTACA | 1 cut(s) | 1159 |
| Bsp143I | GATC | 4 cut(s) | 364, 563, 670, 950 |
| Bsp19I | CCATGG | 1 cut(s) | 1530 |
| BspACI | CCGC | 4 cut(s) | 202, 209, 404, 1500 |
| BspANI | GGCC | 3 cut(s) | 534, 1529, 1535 |
| BspEI | TCCGGA | 1 cut(s) | 819 |
| BspLI | GGNNCC | 3 cut(s) | 174, 183, 1518 |
| BspPI | GGATC | 3 cut(s) | 372, 571, 945 |
| BspQI | GCTCTTC | 2 cut(s) | 981, 1411 |
| BspT107I | GGYRCC | 1 cut(s) | 181 |
| BspTI | CTTAAG | 1 cut(s) | 608 |
| BsrFI | RCCGGY | 1 cut(s) | 29 |
| BsrGI | TGTACA | 1 cut(s) | 1159 |
| BsrI | ACTGG | 4 cut(s) | 176, 518, 1077, 1145 |
| BssAI | RCCGGY | 1 cut(s) | 29 |
| BssECI | CCNNGG | 1 cut(s) | 1530 |
| BssMI | GATC | 4 cut(s) | 364, 563, 670, 950 |
| BssNI | GRCGYC | 1 cut(s) | 33 |
| BssSI | CACGAG | 1 cut(s) | 1323 |
| BssT1I | CCWWGG | 1 cut(s) | 1530 |
| Bst2BI | CACGAG | 1 cut(s) | 1323 |
| Bst4CI | ACNGT | 5 cut(s) | 810, 1200, 1352, 1565, 1727 |
| Bst6I | CTCTTC | 5 cut(s) | 159, 188, 981, 1411, 1567 |
| BstACI | GRCGYC | 1 cut(s) | 33 |
| BstAFI | CTTAAG | 1 cut(s) | 608 |
| BstAUI | TGTACA | 1 cut(s) | 1159 |
| BstBAI | YACGTR | 1 cut(s) | 659 |
| BstC8I | GCNNGC | 6 cut(s) | 31, 510, 615, 993, 997, 1176 |
| BstDEI | CTNAG | 4 cut(s) | 264, 425, 621, 1179 |
| BstDSI | CCRYGG | 1 cut(s) | 1530 |
| BstF5I | GGATG | 4 cut(s) | 446, 630, 631, 871 |
| BstHHI | GCGC | 1 cut(s) | 1542 |
| BstKTI | GATC | 4 cut(s) | 367, 566, 673, 953 |
| BstMAI | GTCTC | 1 cut(s) | 1049 |
| BstMBI | GATC | 4 cut(s) | 364, 563, 670, 950 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 181, 269, 340, 540, 1252 |
| BstNSI | RCATGY | 2 cut(s) | 617, 930 |
| BstSCI | CCNGG | 3 cut(s) | 383, 534, 1567 |
| BstV1I | GCAGC | 3 cut(s) | 281, 1369, 1372 |
| BstX2I | RGATCY | 1 cut(s) | 563 |
| BstYI | RGATCY | 1 cut(s) | 563 |
| BsuI | GTATCC | 1 cut(s) | 226 |
| BsuRI | GGCC | 3 cut(s) | 534, 1529, 1535 |
| BtgI | CCRYGG | 1 cut(s) | 1530 |
| BtsCI | GGATG | 4 cut(s) | 446, 630, 631, 871 |
| BtsIMutI | CAGTG | 4 cut(s) | 183, 244, 1152, 1308 |
| Cac8I | GCNNGC | 6 cut(s) | 31, 510, 615, 993, 997, 1176 |
| CaiI | CAGNNNCTG | 2 cut(s) | 566, 1379 |
| CfoI | GCGC | 1 cut(s) | 1542 |
| Cfr10I | RCCGGY | 1 cut(s) | 29 |
| Cfr13I | GGNCC | 1 cut(s) | 1527 |
| CseI | GACGC | 1 cut(s) | 22 |
| Csp6I | GTAC | 1 cut(s) | 1160 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1131, 1166 |
| CviAII | CATG | 7 cut(s) | 377, 595, 614, 927, 1010, 1293, 1531 |
| CviQI | GTAC | 1 cut(s) | 1160 |
| DdeI | CTNAG | 4 cut(s) | 264, 425, 621, 1179 |
| DpnI | GATC | 4 cut(s) | 366, 565, 672, 952 |
| DpnII | GATC | 4 cut(s) | 364, 563, 670, 950 |
| DraI | TTTAAA | 1 cut(s) | 484 |
| EaeI | YGGCCR | 1 cut(s) | 532 |
| Eam1104I | CTCTTC | 5 cut(s) | 159, 188, 981, 1411, 1567 |
| EarI | CTCTTC | 5 cut(s) | 159, 188, 981, 1411, 1567 |
| EciI | GGCGGA | 1 cut(s) | 224 |
| Eco130I | CCWWGG | 1 cut(s) | 1530 |
| Eco57I | CTGAAG | 2 cut(s) | 162, 1261 |
| Eco72I | CACGTG | 1 cut(s) | 659 |
| EcoT14I | CCWWGG | 1 cut(s) | 1530 |
| EcoT22I | ATGCAT | 2 cut(s) | 619, 1011 |
| ErhI | CCWWGG | 1 cut(s) | 1530 |
| FaeI | CATG | 7 cut(s) | 380, 598, 617, 930, 1013, 1296, 1534 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1086, 1118 |
| FaqI | GGGAC | 1 cut(s) | 1551 |
| FatI | CATG | 7 cut(s) | 376, 594, 613, 926, 1009, 1292, 1530 |
| FbaI | TGATCA | 1 cut(s) | 670 |
| FblI | GTMKAC | 1 cut(s) | 1722 |
| Fnu4HI | GCNGC | 4 cut(s) | 270, 404, 1383, 1386 |
| FokI | GGATG | 4 cut(s) | 453, 617, 638, 878 |
| Fsp4HI | GCNGC | 4 cut(s) | 270, 404, 1383, 1386 |
| FspBI | CTAG | 1 cut(s) | 1718 |
| FspI | TGCGCA | 1 cut(s) | 1541 |
| GlaI | GCGC | 1 cut(s) | 1541 |
| GluI | GCNGC | 4 cut(s) | 270, 404, 1383, 1386 |
| GsuI | CTGGAG | 1 cut(s) | 55 |
| HaeIII | GGCC | 3 cut(s) | 534, 1529, 1535 |
| HapII | CCGG | 6 cut(s) | 30, 46, 384, 535, 820, 1569 |
| HgaI | GACGC | 1 cut(s) | 22 |
| HhaI | GCGC | 1 cut(s) | 1542 |
| Hin1I | GRCGYC | 1 cut(s) | 33 |
| Hin1II | CATG | 7 cut(s) | 380, 598, 617, 930, 1013, 1296, 1534 |
| Hin6I | GCGC | 1 cut(s) | 1540 |
| HinP1I | GCGC | 1 cut(s) | 1540 |
| HincII | GTYRAC | 2 cut(s) | 1348, 1723 |
| HindII | GTYRAC | 2 cut(s) | 1348, 1723 |
| HindIII | AAGCTT | 1 cut(s) | 1120 |
| HpaII | CCGG | 6 cut(s) | 30, 46, 384, 535, 820, 1569 |
| Hpy166II | GTNNAC | 3 cut(s) | 806, 1348, 1723 |
| Hpy188III | TCNNGA | 6 cut(s) | 72, 79, 432, 567, 820, 1373 |
| Hpy8I | GTNNAC | 3 cut(s) | 806, 1348, 1723 |
| Hpy99I | CGWCG | 1 cut(s) | 65 |
| HpyAV | CCTTC | 4 cut(s) | 199, 408, 948, 1088 |
| HpyCH4III | ACNGT | 5 cut(s) | 810, 1200, 1352, 1565, 1727 |
| HpyCH4IV | ACGT | 1 cut(s) | 658 |
| HpyCH4V | TGCA | 7 cut(s) | 134, 617, 690, 746, 995, 1009, 1127 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 181, 269, 340, 540, 1252 |
| HpyF3I | CTNAG | 4 cut(s) | 264, 425, 621, 1179 |
| HpySE526I | ACGT | 1 cut(s) | 658 |
| Hsp92I | GRCGYC | 1 cut(s) | 33 |
| Hsp92II | CATG | 7 cut(s) | 380, 598, 617, 930, 1013, 1296, 1534 |
| HspAI | GCGC | 1 cut(s) | 1540 |
| Kpn2I | TCCGGA | 1 cut(s) | 819 |
| KroI | GCCGGC | 1 cut(s) | 29 |
| KroNI | GCCGGC | 1 cut(s) | 31 |
| Ksp22I | TGATCA | 1 cut(s) | 670 |
| Kzo9I | GATC | 4 cut(s) | 364, 563, 670, 950 |
| LguI | GCTCTTC | 2 cut(s) | 981, 1411 |
| LmnI | GCTCC | 4 cut(s) | 172, 310, 559, 1171 |
| Lsp1109I | GCAGC | 3 cut(s) | 281, 1369, 1372 |
| LweI | GCATC | 4 cut(s) | 626, 639, 1003, 1511 |
| MaeI | CTAG | 1 cut(s) | 1718 |
| MaeII | ACGT | 1 cut(s) | 658 |
| MalI | GATC | 4 cut(s) | 366, 565, 672, 952 |
| MboI | GATC | 4 cut(s) | 364, 563, 670, 950 |
| MfeI | CAATTG | 1 cut(s) | 1692 |
| MflI | RGATCY | 1 cut(s) | 563 |
| MhlI | GDGCHC | 1 cut(s) | 556 |
| MluCI | AATT | 9 cut(s) | 129, 412, 463, 662, 713, 751, 1302, 1360, 1692 |
| MlyI | GAGTC | 2 cut(s) | 878, 1141 |
| MmeI | TCCRAC | 3 cut(s) | 581, 843, 1678 |
| Mph1103I | ATGCAT | 2 cut(s) | 619, 1011 |
| MreI | CGCCGGCG | 1 cut(s) | 29 |
| MroI | TCCGGA | 1 cut(s) | 819 |
| MroNI | GCCGGC | 1 cut(s) | 29 |
| MroXI | GAANNNNTTC | 1 cut(s) | 53 |
| MslI | CAYNNNNRTG | 3 cut(s) | 377, 599, 1004 |
| MspCI | CTTAAG | 1 cut(s) | 608 |
| MspI | CCGG | 6 cut(s) | 30, 46, 384, 535, 820, 1569 |
| MspR9I | CCNGG | 3 cut(s) | 385, 536, 1569 |
| MunI | CAATTG | 1 cut(s) | 1692 |
| Mva1269I | GAATGC | 1 cut(s) | 545 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 181, 269, 340, 540, 1252 |
| NaeI | GCCGGC | 1 cut(s) | 31 |
| NciI | CCSGG | 3 cut(s) | 385, 536, 1569 |
| NcoI | CCATGG | 1 cut(s) | 1530 |
| NdeII | GATC | 4 cut(s) | 364, 563, 670, 950 |
| NgoMIV | GCCGGC | 1 cut(s) | 29 |
| NlaIII | CATG | 7 cut(s) | 380, 598, 617, 930, 1013, 1296, 1534 |
| NlaIV | GGNNCC | 3 cut(s) | 174, 183, 1518 |
| NsbI | TGCGCA | 1 cut(s) | 1541 |
| NsiI | ATGCAT | 2 cut(s) | 619, 1011 |
| NspI | RCATGY | 2 cut(s) | 617, 930 |
| PaeI | GCATGC | 1 cut(s) | 617 |
| PciSI | GCTCTTC | 2 cut(s) | 981, 1411 |
| PctI | GAATGC | 1 cut(s) | 545 |
| PdiI | GCCGGC | 1 cut(s) | 31 |
| PdmI | GAANNNNTTC | 1 cut(s) | 53 |
| PfoI | TCCNGGA | 2 cut(s) | 383, 1567 |
| PkrI | GCNGC | 4 cut(s) | 271, 405, 1384, 1387 |
| PleI | GAGTC | 2 cut(s) | 877, 1140 |
| PmaCI | CACGTG | 1 cut(s) | 659 |
| PmlI | CACGTG | 1 cut(s) | 659 |
| PpsI | GAGTC | 2 cut(s) | 877, 1140 |
| Ppu21I | YACGTR | 1 cut(s) | 659 |
| PshBI | ATTAAT | 1 cut(s) | 1359 |
| PspCI | CACGTG | 1 cut(s) | 659 |
| PspN4I | GGNNCC | 3 cut(s) | 174, 183, 1518 |
| PspPI | GGNCC | 1 cut(s) | 1527 |
| PstNI | CAGNNNCTG | 2 cut(s) | 566, 1379 |
| PsuI | RGATCY | 1 cut(s) | 563 |
| RsaI | GTAC | 1 cut(s) | 1161 |
| RsaNI | GTAC | 1 cut(s) | 1160 |
| RseI | CAYNNNNRTG | 3 cut(s) | 377, 599, 1004 |
| SalI | GTCGAC | 1 cut(s) | 1721 |
| SapI | GCTCTTC | 2 cut(s) | 981, 1411 |
| SatI | GCNGC | 4 cut(s) | 270, 404, 1383, 1386 |
| Sau3AI | GATC | 4 cut(s) | 364, 563, 670, 950 |
| Sau96I | GGNCC | 1 cut(s) | 1527 |
| SchI | GAGTC | 2 cut(s) | 878, 1141 |
| ScrFI | CCNGG | 3 cut(s) | 385, 536, 1569 |
| SduI | GDGCHC | 1 cut(s) | 556 |
| SfaNI | GCATC | 4 cut(s) | 626, 639, 1003, 1511 |
| SgrAI | CRCCGGYG | 1 cut(s) | 29 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 377, 599, 1004 |
| SmlI | CTYRAG | 4 cut(s) | 338, 407, 430, 608 |
| SmoI | CTYRAG | 4 cut(s) | 338, 407, 430, 608 |
| SphI | GCATGC | 1 cut(s) | 617 |
| Sse9I | AATT | 9 cut(s) | 129, 412, 463, 662, 713, 751, 1302, 1360, 1692 |
| SsiI | CCGC | 4 cut(s) | 202, 209, 404, 1500 |
| SspMI | CTAG | 1 cut(s) | 1718 |
| StyD4I | CCNGG | 3 cut(s) | 383, 534, 1567 |
| StyI | CCWWGG | 1 cut(s) | 1530 |
| TaaI | ACNGT | 5 cut(s) | 810, 1200, 1352, 1565, 1727 |
| TaiI | ACGT | 1 cut(s) | 661 |
| TaqI | TCGA | 4 cut(s) | 63, 1021, 1408, 1722 |
| TasI | AATT | 9 cut(s) | 129, 412, 463, 662, 713, 751, 1302, 1360, 1692 |
| TatI | WGTACW | 1 cut(s) | 1159 |
| TauI | GCSGC | 1 cut(s) | 406 |
| TscAI | CASTG | 4 cut(s) | 183, 244, 1152, 1315 |
| TseI | GCWGC | 3 cut(s) | 269, 1382, 1385 |
| TspDTI | ATGAA | 3 cut(s) | 339, 365, 617 |
| TspGWI | ACGGA | 2 cut(s) | 1492, 1509 |
| TspRI | CASTG | 4 cut(s) | 183, 244, 1152, 1315 |
| Vha464I | CTTAAG | 1 cut(s) | 608 |
| VspI | ATTAAT | 1 cut(s) | 1359 |
| XapI | RAATTY | 3 cut(s) | 412, 713, 751 |
| XceI | RCATGY | 2 cut(s) | 617, 930 |
| XmiI | GTMKAC | 1 cut(s) | 1722 |
| XmnI | GAANNNNTTC | 1 cut(s) | 53 |
| XspI | CTAG | 1 cut(s) | 1718 |
| Zsp2I | ATGCAT | 2 cut(s) | 619, 1011 |