Prupe.6G240000_v2.0.a1

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
23907592 .. 23912189
4598 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G240000.2

Sequence Viewer

Length: 1740 bp
ATGGAAGAAGGCACTTCGTTTTTGTTCGCCGGCGTCAGCTTCAACCGGAAGAAGTTCGCCGTCGATTTCTCCAGATTCCAGAAGAAGAAAGAGAGTGAGAAAACGATAGAAGATTTGAGCTTCCTTGAAATTGCAAAACCTGAAGCAGAGCAGGAGGAGGAGGAAGAGGAGGAGCCAGTGGTGCCTGTTAAGAAGAGGAAGCGGAAGGCGGAAGTATCCGAGCCTGTGGAGGGAATCAGTGTGTTTAAGACCTCAAAATCAGCTAAGGCAGCGAAGAAAGAGATAGAGAAACCTCTCATTGAACGCTCGGAGCAGAAAAAGAAGTTAAATAAGCAACTTGAGCGTGATTCATTATTGAGAAAGGATCATAACATTCATGTGTCCGGGAATAACATTCCTTCGCCGCTTGAGAATTTTTCGGAACTAAGCTCAAGATATGGATGTGAATCATATTTACTTCGCAATTTGGCTGAACTTGGATTTAAAGAACCAACACCAATCCAAAGGCAGGCTATTCCAGTCCTCTTATCTGGCCGGGAATGCTTTGCTTGTGCTCCAACAGGATCTGGAAAAACCCTTGCTTTTGTTTGCCCCATGCTTATGAAACTTAAGCATGCATCTAAGGATGGCATCCGAGCTGTTATTCTTTGTCCTACACGTGAATTAGCTGATCAGACAACCAGAGAGTGCAAAAAGATGGCAAAAGGAAATAAATTCTACATCAAGTTAATGACTAAAGAGTTTGCAAGAAATTCTGATTTTTCAAAAAGACCTTGTGATATACTCATTTCTACTCCACTTCGTTTACGGTTGGCTATCCGGAAAAAAAAGGTTGATTTAAGCAGGGTTGAGTATCTGGTGTTGGATGAGTCTGATAAGTTATTTGAGCTTGGCTTGTTAAAGCAGATTGATTCTGTGGTCAAAGCATGTTCAAACCCTTCAATAATACGATCCTTGTTTAGTGCTACCTTACCTGATTTCGTTGAAGAGCTTGCACGCACTATAATGCATGATGCTGTTCGAGTTATCATTGGCAGGAAAAATACTGCTTCCGAGACTATCAAGCAAAAACTGGTTTTTGCTGGAAGTGAAGAAGGGAAACTTTTAGCACTTCGTCAAAGCTTTGCAGAGAGTCTGAATCCACCAGTGTTGATATTTGTACAAAGCAAGGAGCGAGCTAAGGAACTCTATGGAGAACTGTTGTTTGAGAACATAAGAGTTAGTGCCATACATTCTGATTTGTCGCAAACACAGCGAGAAAATGCTGTTGATGACTTCAGAGCTGGAAAAACATGGGTTTTAATTGCCACTGATGTTATTGCTCGTGGTATGGATTTCAAAGGTGTCAACTGTGTGATTAATTATGACTTTCCAGATTCTGCTGCTGCTTACATTCACAGGATTGGTCGATGTGGAAGAGCAGGGAGGAGTGGAGAAGCTATTACTTTCTACACAGAGGCAGATATTCCATATTTACGGAATATAGCTAATGTGATGTCCGCATCAGGTTGTGAGGTTCCGTCTTGGGCCATGGCCTTGCGCAAACAGAAGTGGAAAAAGCACCGTCCCGGAAGAGAATCAATATCAACTCAACCGAAAGATGAGCAAGAATCTACCAACAAAAAAAAGAAGAAAGATGAGCAAGAATCTATCAACAAAAAAAAGAGAAGAAAGATGAGCAAGAATAGAGCAATTGTCGGAGGTAGGGAGTTATCTCTAGTCGACAGTTCCAAAACATAG

Protein Analysis

580

Amino Acids

65.47

Weight (kDa)

9.47

Isoelectric Point (pI)

54.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012094)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1541
AccB1I GGYRCC 1 cut(s) 181
AccI GTMKAC 1 cut(s) 1722
AccIII TCCGGA 1 cut(s) 819
AciI CCGC 4 cut(s) 202, 209, 404, 1500
AclWI GGATC 3 cut(s) 372, 571, 945
AcoI YGGCCR 1 cut(s) 532
AcsI RAATTY 3 cut(s) 412, 713, 751
AcuI CTGAAG 2 cut(s) 162, 1261
AcvI CACGTG 1 cut(s) 659
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 1 cut(s) 1161
AfiI CCNNNNNNNGG 2 cut(s) 230, 508
AflII CTTAAG 1 cut(s) 608
AflIII ACRYGT 1 cut(s) 656
AgsI TTSAA 8 cut(s) 43, 128, 302, 765, 933, 942, 986, 1339
Alw21I GWGCWC 1 cut(s) 556
Alw26I GTCTC 1 cut(s) 1049
AlwI GGATC 3 cut(s) 372, 571, 945
AlwNI CAGNNNCTG 2 cut(s) 566, 1379
Aor13HI TCCGGA 1 cut(s) 819
AoxI GGCC 3 cut(s) 532, 1527, 1533
ApeKI GCWGC 3 cut(s) 269, 1382, 1385
ApoI RAATTY 3 cut(s) 412, 713, 751
AseI ATTAAT 1 cut(s) 1359
Asp700I GAANNNNTTC 1 cut(s) 53
AspLEI GCGC 1 cut(s) 1542
AspS9I GGNCC 1 cut(s) 1527
AsuC2I CCSGG 3 cut(s) 385, 536, 1569
BanI GGYRCC 1 cut(s) 181
BauI CACGAG 1 cut(s) 1323
BbrPI CACGTG 1 cut(s) 659
Bbv12I GWGCWC 1 cut(s) 556
BbvI GCAGC 3 cut(s) 281, 1369, 1372
BccI CCATC 2 cut(s) 620, 691
BceAI ACGGC 1 cut(s) 44
BciVI GTATCC 1 cut(s) 226
BclI TGATCA 1 cut(s) 670
BcnI CCSGG 3 cut(s) 385, 536, 1569
BcoDI GTCTC 1 cut(s) 1049
BfaI CTAG 1 cut(s) 1718
BfrI CTTAAG 1 cut(s) 608
BfuI GTATCC 1 cut(s) 226
BisI GCNGC 4 cut(s) 270, 404, 1383, 1386
BlsI GCNGC 4 cut(s) 271, 405, 1384, 1387
Bme1390I CCNGG 3 cut(s) 385, 536, 1569
BmgT120I GGNCC 1 cut(s) 1527
BmiI GGNNCC 3 cut(s) 174, 183, 1518
BmrFI CCNGG 3 cut(s) 385, 536, 1569
BmsI GCATC 4 cut(s) 626, 639, 1003, 1511
BpmI CTGGAG 1 cut(s) 55
Bpu10I CCTNAGC 2 cut(s) 264, 1179
BpuEI CTTGAG 3 cut(s) 359, 415, 428
BpuMI CCSGG 3 cut(s) 385, 536, 1569
BsaAI YACGTR 1 cut(s) 659
BsaBI GATNNNNATC 1 cut(s) 445
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 1530
BsaWI WCCGGW 2 cut(s) 45, 819
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 508
Bse118I RCCGGY 1 cut(s) 29
Bse1I ACTGG 4 cut(s) 176, 518, 1077, 1145
Bse8I GATNNNNATC 1 cut(s) 445
BseAI TCCGGA 1 cut(s) 819
BseDI CCNNGG 1 cut(s) 1530
BseGI GGATG 4 cut(s) 446, 630, 631, 871
BseJI GATNNNNATC 1 cut(s) 445
BseLI CCNNNNNNNGG 2 cut(s) 230, 508
BseNI ACTGG 4 cut(s) 176, 518, 1077, 1145
BseRI GAGGAG 5 cut(s) 170, 173, 182, 185, 1441
BseXI GCAGC 3 cut(s) 281, 1369, 1372
BshFI GGCC 3 cut(s) 534, 1529, 1535
BshNI GGYRCC 1 cut(s) 181
BsiHKAI GWGCWC 1 cut(s) 556
BsiSI CCGG 6 cut(s) 30, 46, 384, 535, 820, 1569
BslFI GGGAC 1 cut(s) 1551
BslI CCNNNNNNNGG 2 cut(s) 230, 508
BsmAI GTCTC 1 cut(s) 1049
BsmFI GGGAC 1 cut(s) 1551
BsmI GAATGC 1 cut(s) 545
BsnI GGCC 3 cut(s) 534, 1529, 1535
Bsp1286I GDGCHC 1 cut(s) 556
Bsp13I TCCGGA 1 cut(s) 819
Bsp1407I TGTACA 1 cut(s) 1159
Bsp143I GATC 4 cut(s) 364, 563, 670, 950
Bsp19I CCATGG 1 cut(s) 1530
BspACI CCGC 4 cut(s) 202, 209, 404, 1500
BspANI GGCC 3 cut(s) 534, 1529, 1535
BspEI TCCGGA 1 cut(s) 819
BspLI GGNNCC 3 cut(s) 174, 183, 1518
BspPI GGATC 3 cut(s) 372, 571, 945
BspQI GCTCTTC 2 cut(s) 981, 1411
BspT107I GGYRCC 1 cut(s) 181
BspTI CTTAAG 1 cut(s) 608
BsrFI RCCGGY 1 cut(s) 29
BsrGI TGTACA 1 cut(s) 1159
BsrI ACTGG 4 cut(s) 176, 518, 1077, 1145
BssAI RCCGGY 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 1530
BssMI GATC 4 cut(s) 364, 563, 670, 950
BssNI GRCGYC 1 cut(s) 33
BssSI CACGAG 1 cut(s) 1323
BssT1I CCWWGG 1 cut(s) 1530
Bst2BI CACGAG 1 cut(s) 1323
Bst4CI ACNGT 5 cut(s) 810, 1200, 1352, 1565, 1727
Bst6I CTCTTC 5 cut(s) 159, 188, 981, 1411, 1567
BstACI GRCGYC 1 cut(s) 33
BstAFI CTTAAG 1 cut(s) 608
BstAUI TGTACA 1 cut(s) 1159
BstBAI YACGTR 1 cut(s) 659
BstC8I GCNNGC 6 cut(s) 31, 510, 615, 993, 997, 1176
BstDEI CTNAG 4 cut(s) 264, 425, 621, 1179
BstDSI CCRYGG 1 cut(s) 1530
BstF5I GGATG 4 cut(s) 446, 630, 631, 871
BstHHI GCGC 1 cut(s) 1542
BstKTI GATC 4 cut(s) 367, 566, 673, 953
BstMAI GTCTC 1 cut(s) 1049
BstMBI GATC 4 cut(s) 364, 563, 670, 950
BstMWI GCNNNNNNNGC 5 cut(s) 181, 269, 340, 540, 1252
BstNSI RCATGY 2 cut(s) 617, 930
BstSCI CCNGG 3 cut(s) 383, 534, 1567
BstV1I GCAGC 3 cut(s) 281, 1369, 1372
BstX2I RGATCY 1 cut(s) 563
BstYI RGATCY 1 cut(s) 563
BsuI GTATCC 1 cut(s) 226
BsuRI GGCC 3 cut(s) 534, 1529, 1535
BtgI CCRYGG 1 cut(s) 1530
BtsCI GGATG 4 cut(s) 446, 630, 631, 871
BtsIMutI CAGTG 4 cut(s) 183, 244, 1152, 1308
Cac8I GCNNGC 6 cut(s) 31, 510, 615, 993, 997, 1176
CaiI CAGNNNCTG 2 cut(s) 566, 1379
CfoI GCGC 1 cut(s) 1542
Cfr10I RCCGGY 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 1527
CseI GACGC 1 cut(s) 22
Csp6I GTAC 1 cut(s) 1160
CspCI CAANNNNNGTGG 2 cut(s) 1131, 1166
CviAII CATG 7 cut(s) 377, 595, 614, 927, 1010, 1293, 1531
CviQI GTAC 1 cut(s) 1160
DdeI CTNAG 4 cut(s) 264, 425, 621, 1179
DpnI GATC 4 cut(s) 366, 565, 672, 952
DpnII GATC 4 cut(s) 364, 563, 670, 950
DraI TTTAAA 1 cut(s) 484
EaeI YGGCCR 1 cut(s) 532
Eam1104I CTCTTC 5 cut(s) 159, 188, 981, 1411, 1567
EarI CTCTTC 5 cut(s) 159, 188, 981, 1411, 1567
EciI GGCGGA 1 cut(s) 224
Eco130I CCWWGG 1 cut(s) 1530
Eco57I CTGAAG 2 cut(s) 162, 1261
Eco72I CACGTG 1 cut(s) 659
EcoT14I CCWWGG 1 cut(s) 1530
EcoT22I ATGCAT 2 cut(s) 619, 1011
ErhI CCWWGG 1 cut(s) 1530
FaeI CATG 7 cut(s) 380, 598, 617, 930, 1013, 1296, 1534
FalI AAGNNNNNCTT 2 cut(s) 1086, 1118
FaqI GGGAC 1 cut(s) 1551
FatI CATG 7 cut(s) 376, 594, 613, 926, 1009, 1292, 1530
FbaI TGATCA 1 cut(s) 670
FblI GTMKAC 1 cut(s) 1722
Fnu4HI GCNGC 4 cut(s) 270, 404, 1383, 1386
FokI GGATG 4 cut(s) 453, 617, 638, 878
Fsp4HI GCNGC 4 cut(s) 270, 404, 1383, 1386
FspBI CTAG 1 cut(s) 1718
FspI TGCGCA 1 cut(s) 1541
GlaI GCGC 1 cut(s) 1541
GluI GCNGC 4 cut(s) 270, 404, 1383, 1386
GsuI CTGGAG 1 cut(s) 55
HaeIII GGCC 3 cut(s) 534, 1529, 1535
HapII CCGG 6 cut(s) 30, 46, 384, 535, 820, 1569
HgaI GACGC 1 cut(s) 22
HhaI GCGC 1 cut(s) 1542
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 7 cut(s) 380, 598, 617, 930, 1013, 1296, 1534
Hin6I GCGC 1 cut(s) 1540
HinP1I GCGC 1 cut(s) 1540
HincII GTYRAC 2 cut(s) 1348, 1723
HindII GTYRAC 2 cut(s) 1348, 1723
HindIII AAGCTT 1 cut(s) 1120
HpaII CCGG 6 cut(s) 30, 46, 384, 535, 820, 1569
Hpy166II GTNNAC 3 cut(s) 806, 1348, 1723
Hpy188III TCNNGA 6 cut(s) 72, 79, 432, 567, 820, 1373
Hpy8I GTNNAC 3 cut(s) 806, 1348, 1723
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 4 cut(s) 199, 408, 948, 1088
HpyCH4III ACNGT 5 cut(s) 810, 1200, 1352, 1565, 1727
HpyCH4IV ACGT 1 cut(s) 658
HpyCH4V TGCA 7 cut(s) 134, 617, 690, 746, 995, 1009, 1127
HpyF10VI GCNNNNNNNGC 5 cut(s) 181, 269, 340, 540, 1252
HpyF3I CTNAG 4 cut(s) 264, 425, 621, 1179
HpySE526I ACGT 1 cut(s) 658
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 7 cut(s) 380, 598, 617, 930, 1013, 1296, 1534
HspAI GCGC 1 cut(s) 1540
Kpn2I TCCGGA 1 cut(s) 819
KroI GCCGGC 1 cut(s) 29
KroNI GCCGGC 1 cut(s) 31
Ksp22I TGATCA 1 cut(s) 670
Kzo9I GATC 4 cut(s) 364, 563, 670, 950
LguI GCTCTTC 2 cut(s) 981, 1411
LmnI GCTCC 4 cut(s) 172, 310, 559, 1171
Lsp1109I GCAGC 3 cut(s) 281, 1369, 1372
LweI GCATC 4 cut(s) 626, 639, 1003, 1511
MaeI CTAG 1 cut(s) 1718
MaeII ACGT 1 cut(s) 658
MalI GATC 4 cut(s) 366, 565, 672, 952
MboI GATC 4 cut(s) 364, 563, 670, 950
MfeI CAATTG 1 cut(s) 1692
MflI RGATCY 1 cut(s) 563
MhlI GDGCHC 1 cut(s) 556
MluCI AATT 9 cut(s) 129, 412, 463, 662, 713, 751, 1302, 1360, 1692
MlyI GAGTC 2 cut(s) 878, 1141
MmeI TCCRAC 3 cut(s) 581, 843, 1678
Mph1103I ATGCAT 2 cut(s) 619, 1011
MreI CGCCGGCG 1 cut(s) 29
MroI TCCGGA 1 cut(s) 819
MroNI GCCGGC 1 cut(s) 29
MroXI GAANNNNTTC 1 cut(s) 53
MslI CAYNNNNRTG 3 cut(s) 377, 599, 1004
MspCI CTTAAG 1 cut(s) 608
MspI CCGG 6 cut(s) 30, 46, 384, 535, 820, 1569
MspR9I CCNGG 3 cut(s) 385, 536, 1569
MunI CAATTG 1 cut(s) 1692
Mva1269I GAATGC 1 cut(s) 545
MwoI GCNNNNNNNGC 5 cut(s) 181, 269, 340, 540, 1252
NaeI GCCGGC 1 cut(s) 31
NciI CCSGG 3 cut(s) 385, 536, 1569
NcoI CCATGG 1 cut(s) 1530
NdeII GATC 4 cut(s) 364, 563, 670, 950
NgoMIV GCCGGC 1 cut(s) 29
NlaIII CATG 7 cut(s) 380, 598, 617, 930, 1013, 1296, 1534
NlaIV GGNNCC 3 cut(s) 174, 183, 1518
NsbI TGCGCA 1 cut(s) 1541
NsiI ATGCAT 2 cut(s) 619, 1011
NspI RCATGY 2 cut(s) 617, 930
PaeI GCATGC 1 cut(s) 617
PciSI GCTCTTC 2 cut(s) 981, 1411
PctI GAATGC 1 cut(s) 545
PdiI GCCGGC 1 cut(s) 31
PdmI GAANNNNTTC 1 cut(s) 53
PfoI TCCNGGA 2 cut(s) 383, 1567
PkrI GCNGC 4 cut(s) 271, 405, 1384, 1387
PleI GAGTC 2 cut(s) 877, 1140
PmaCI CACGTG 1 cut(s) 659
PmlI CACGTG 1 cut(s) 659
PpsI GAGTC 2 cut(s) 877, 1140
Ppu21I YACGTR 1 cut(s) 659
PshBI ATTAAT 1 cut(s) 1359
PspCI CACGTG 1 cut(s) 659
PspN4I GGNNCC 3 cut(s) 174, 183, 1518
PspPI GGNCC 1 cut(s) 1527
PstNI CAGNNNCTG 2 cut(s) 566, 1379
PsuI RGATCY 1 cut(s) 563
RsaI GTAC 1 cut(s) 1161
RsaNI GTAC 1 cut(s) 1160
RseI CAYNNNNRTG 3 cut(s) 377, 599, 1004
SalI GTCGAC 1 cut(s) 1721
SapI GCTCTTC 2 cut(s) 981, 1411
SatI GCNGC 4 cut(s) 270, 404, 1383, 1386
Sau3AI GATC 4 cut(s) 364, 563, 670, 950
Sau96I GGNCC 1 cut(s) 1527
SchI GAGTC 2 cut(s) 878, 1141
ScrFI CCNGG 3 cut(s) 385, 536, 1569
SduI GDGCHC 1 cut(s) 556
SfaNI GCATC 4 cut(s) 626, 639, 1003, 1511
SgrAI CRCCGGYG 1 cut(s) 29
SmiMI CAYNNNNRTG 3 cut(s) 377, 599, 1004
SmlI CTYRAG 4 cut(s) 338, 407, 430, 608
SmoI CTYRAG 4 cut(s) 338, 407, 430, 608
SphI GCATGC 1 cut(s) 617
Sse9I AATT 9 cut(s) 129, 412, 463, 662, 713, 751, 1302, 1360, 1692
SsiI CCGC 4 cut(s) 202, 209, 404, 1500
SspMI CTAG 1 cut(s) 1718
StyD4I CCNGG 3 cut(s) 383, 534, 1567
StyI CCWWGG 1 cut(s) 1530
TaaI ACNGT 5 cut(s) 810, 1200, 1352, 1565, 1727
TaiI ACGT 1 cut(s) 661
TaqI TCGA 4 cut(s) 63, 1021, 1408, 1722
TasI AATT 9 cut(s) 129, 412, 463, 662, 713, 751, 1302, 1360, 1692
TatI WGTACW 1 cut(s) 1159
TauI GCSGC 1 cut(s) 406
TscAI CASTG 4 cut(s) 183, 244, 1152, 1315
TseI GCWGC 3 cut(s) 269, 1382, 1385
TspDTI ATGAA 3 cut(s) 339, 365, 617
TspGWI ACGGA 2 cut(s) 1492, 1509
TspRI CASTG 4 cut(s) 183, 244, 1152, 1315
Vha464I CTTAAG 1 cut(s) 608
VspI ATTAAT 1 cut(s) 1359
XapI RAATTY 3 cut(s) 412, 713, 751
XceI RCATGY 2 cut(s) 617, 930
XmiI GTMKAC 1 cut(s) 1722
XmnI GAANNNNTTC 1 cut(s) 53
XspI CTAG 1 cut(s) 1718
Zsp2I ATGCAT 2 cut(s) 619, 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.