Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0012094

Physical Location & Seq

Genomic Coordinates Forward (+)

18725447 .. 18732594

Gene Structure 7148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG205000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1680 bp

ATGGCGGAAGGCGCTTCATTTTTGTTCGGCGGCATTCACTTCAACCGGAGAAAGTTCGCCACTGACTTTTCCCGATTCGAGGCCAAAAAGAAAGAGATAAACGCTTCGAGCCTTGCACAACCTGAACCAGAAGAAGAGGAGGAGGAGGAGGAGGAAGAGCCAGTAGTAGCAGTTTCTGTGAAGAAGAGGAAGAGGAAGACGGAGGCTTCAGAGTCTGGGGATGGAATCAGTCTTTTCAAGACGTCAAAATCAGCAAAGGCAGCTAAGAAAGATAAAGAGAAGCCTGTGAATGAACGCGCCAAGCAGAAGAAGAAATTAAATAGACAACTTGAGCGGGATTCGATAATTCGAAAGAAGCATAATGTGCATGTGTCGGGGAATAATATCCCATCCCCTCTTGAGAATTTTTCGGAGTTAAGCTCAAGATTTGGATGTGAAGAGTATTTACTCCGTAATTTGGCCGAGCTTGGATTTGAAGAGCCAACACCAATCCAAAGACAGGCTATTCCAGTCCTCTTATCTGGCCGGGAATGCTTTGCTTGTGCTCCAACTGGGTCTGGAAAAACCCTTGCTTTTGTGGTTCCCATGCTTATGAAACTTAAGCACGCGTCTAAGGGTGGCATTCGAGCTGTGATTCTTTGTCCTACACGTGAATTAGCTGCTCAGACAACCAGAGAGTGCAAAAAGTTGGCAAAAGGAAATAAATTTTACATTAAGTTGATGACTAAAGAGCTTGTTAGAAGTGCTGATTTTTCAAAAGACCATTGTGATATACTCATATCTACTCCACAACGGCTACGGATGGCTATTCGAAAAAAGAAGCTTAATTTAAGCAGGGTGGAATATCTTGTCTTGGATGAGTCTGATAAGCTCTTTGAGCTTGGCCTGTTAAAGCAGATTGATTCTGTGGTGAAAGCATGCTCAAACCCTTCAATAGTTCGCTCTTTGTTTAGTGCTACTTTACCTGATTTTGTTGAGGAGCTTGCACGTACCATAATGCATGATGCTGTTCGAGTTATCATTGGCAGGAAAAATACTGCTTCTGAGACTATTAAGCAAAAATTGGTATATGCTGGAAGTGAACAAGGGAAATTTCTAGCACTTCGACAGAGCTTTACAGAGAGTCTAAATCCACCAGTGTTGATCTTTGTACAAAGCAAAGAGCGAGCGAAGGAACTGTATGGAGAGCTGTTATGTGAGAACATAAGAGTTGGTGCGATCCATTCTGATATGTCGCAAGCAGAGCGAGAAAATGCTGTTGACGACTTCAGAGCTGGAAAAACATGGGTTTTGATTGCCACTGATGTTATTGCCCGGGGTATGGATTTCAAAGGCATCAACTGTGTTATTAATTATGATTTTCCAGATTCTTCGGCTGCCTACATTCACCGGATTGGTCGCTGTGGAAGAGCGGGAAGGAGTGGAGAAGCTATTACTTTCTACACAGATGAAGATATTCCATTTTTACGGAATATAGCTAATGTTATGGCATCATCAGGTTGTGAGGTTCCATCTTGGATCATGGTCTTGCCCAAAAAGAAGTGGAGAAAGCACAGACCTGGAAGAGGAGGATCGGTATTAGCCGGACCGAAAGATGAAGTAAAAAAGAAGTGGACAAAGAAGAAGGCAAAAAAAACCAAGACAAACATAGATGATGAACCAAAAGATGAGCAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

559

Amino Acids

62.81

Weight (kDa)

9.44

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	162 - 327	1.6e-39	DEAD/DEAH box helicase
ResIII	PF04851	165 - 312	8.6e-11	Type III restriction enzyme, res subunit
Helicase_C	PF00271	364 - 472	2.8e-32	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09720 AT3G09720
fragaria_vesca	FvH4_6g15470
malus_domestica	MD04G1103000.v1.1 MD12G1123200.v1.1
prunus_persica	Prupe.6G240000_v2.0.a1 Prupe.6G240000_v2.0.a1
pyrus_communis	pycom04g09810 pycom12g12190
rosa_chinensis	RchiOBHm_Chr3g0468951
rosa_laevigata	RLG00000024397
rosa_multiflora	Rmu_co8069278.1_g000001 Rmu_co8291353.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412430
rosa_rugosa	Rorug03G0097800
rosa_samantha	Rh3AG147400 Rh3BG170000 Rh3DG205000
rosa_wichuraiana	Rw3G013880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	245
AccBSI	CCGCTC	2 cut(s)	334, 1412
AccII	CGCG	2 cut(s)	297, 608
AciI	CCGC	4 cut(s)	5, 30, 334, 1412
AclWI	GGATC	3 cut(s)	1213, 1526, 1579
AcoI	YGGCCR	2 cut(s)	459, 523
AcsI	RAATTY	3 cut(s)	403, 704, 1091
AcuI	CTGAAG	2 cut(s)	192, 1252
AcvI	CACGTG	1 cut(s)	650
AcyI	GRCGYC	1 cut(s)	242
AfaI	GTAC	2 cut(s)	991, 1152
AfiI	CCNNNNNNNGG	5 cut(s)	79, 457, 499, 1321, 1565
AflII	CTTAAG	1 cut(s)	599
AflIII	ACRYGT	2 cut(s)	606, 647
AgsI	TTSAA	6 cut(s)	43, 238, 476, 756, 933, 1330
AjnI	CCWGG	1 cut(s)	1558
Alw21I	GWGCWC	1 cut(s)	547
Alw26I	GTCTC	1 cut(s)	1040
AlwI	GGATC	3 cut(s)	1213, 1526, 1579
AlwNI	CAGNNNCTG	2 cut(s)	176, 215
Ama87I	CYCGRG	1 cut(s)	1314
AoxI	GGCC	4 cut(s)	81, 459, 523, 883
ApeKI	GCWGC	3 cut(s)	260, 659, 1376
ApoI	RAATTY	3 cut(s)	403, 704, 1091
AseI	ATTAAT	1 cut(s)	1350
Asp700I	GAANNNNTTC	1 cut(s)	1455
AspLEI	GCGC	2 cut(s)	14, 299
AspS9I	GGNCC	1 cut(s)	1586
AsuC2I	CCSGG	3 cut(s)	527, 1315, 1316
AsuHPI	GGTGA	2 cut(s)	922, 1379
AsuII	TTCGAA	2 cut(s)	349, 811
AvaI	CYCGRG	1 cut(s)	1314
AvaII	GGWCC	1 cut(s)	1586
BarI	GAAGNNNNNNTAC	2 cut(s)	429, 461
BbrPI	CACGTG	1 cut(s)	650
BbsI	GAAGAC	1 cut(s)	203
Bbv12I	GWGCWC	1 cut(s)	547
BbvI	GCAGC	3 cut(s)	272, 646, 1363
BccI	CCATC	4 cut(s)	215, 397, 796, 1519
BceAI	ACGGC	1 cut(s)	809
BciT130I	CCWGG	1 cut(s)	1560
BcnI	CCSGG	3 cut(s)	527, 1315, 1316
BcoDI	GTCTC	1 cut(s)	1040
BfaI	CTAG	1 cut(s)	1097
BfoI	RGCGCY	1 cut(s)	15
BfrI	CTTAAG	1 cut(s)	599
BisI	GCNGC	4 cut(s)	31, 261, 660, 1377
BlsI	GCNGC	4 cut(s)	32, 262, 661, 1378
Bme1390I	CCNGG	4 cut(s)	527, 1315, 1316, 1560
Bme18I	GGWCC	1 cut(s)	1586
BmeT110I	CYCGRG	1 cut(s)	1314
BmgT120I	GGNCC	1 cut(s)	1586
BmiI	GGNNCC	2 cut(s)	582, 1509
BmrFI	CCNGG	4 cut(s)	527, 1315, 1316, 1560
BmrI	ACTGGG	1 cut(s)	561
BmsI	GCATC	3 cut(s)	994, 1344, 1499
BmuI	ACTGGG	1 cut(s)	561
BpiI	GAAGAC	1 cut(s)	203
BplI	GAGNNNNNCTC	2 cut(s)	404, 436
Bpu14I	TTCGAA	2 cut(s)	349, 811
BpuEI	CTTGAG	3 cut(s)	350, 406, 419
BpuMI	CCSGG	3 cut(s)	527, 1315, 1316
BsaAI	YACGTR	2 cut(s)	650, 989
BsaHI	GRCGYC	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	1314, 1315
BsaWI	WCCGGW	2 cut(s)	45, 1389
BsaXI	ACNNNNNCTCC	2 cut(s)	1560, 1590
Bsc4I	CCNNNNNNNGG	5 cut(s)	79, 457, 499, 1321, 1565
Bse1I	ACTGG	4 cut(s)	161, 509, 556, 1136
BseBI	CCWGG	1 cut(s)	1560
BseDI	CCNNGG	2 cut(s)	1314, 1315
BseGI	GGATG	5 cut(s)	226, 389, 437, 807, 862
BseLI	CCNNNNNNNGG	5 cut(s)	79, 457, 499, 1321, 1565
BseMII	CTCAG	2 cut(s)	677, 1035
BseNI	ACTGG	4 cut(s)	161, 509, 556, 1136
BseRI	GAGGAG	7 cut(s)	152, 155, 158, 161, 164, 992, 1581
BseXI	GCAGC	3 cut(s)	272, 646, 1363
Bsh1236I	CGCG	2 cut(s)	297, 608
BshFI	GGCC	4 cut(s)	83, 461, 525, 885
BsiHKAI	GWGCWC	1 cut(s)	547
BsiHKCI	CYCGRG	1 cut(s)	1314
BsiSI	CCGG	5 cut(s)	46, 526, 1315, 1390, 1584
BslI	CCNNNNNNNGG	5 cut(s)	79, 457, 499, 1321, 1565
BsmAI	GTCTC	1 cut(s)	1040
BsmI	GAATGC	3 cut(s)	33, 536, 621
BsnI	GGCC	4 cut(s)	83, 461, 525, 885
BsoBI	CYCGRG	1 cut(s)	1314
Bsp119I	TTCGAA	2 cut(s)	349, 811
Bsp1286I	GDGCHC	1 cut(s)	547
Bsp1407I	TGTACA	1 cut(s)	1150
Bsp143I	GATC	4 cut(s)	1143, 1218, 1518, 1571
BspACI	CCGC	4 cut(s)	5, 30, 334, 1412
BspANI	GGCC	4 cut(s)	83, 461, 525, 885
BspCNI	CTCAG	2 cut(s)	676, 1036
BspFNI	CGCG	2 cut(s)	297, 608
BspLI	GGNNCC	2 cut(s)	582, 1509
BspPI	GGATC	3 cut(s)	1213, 1526, 1579
BspQI	GCTCTTC	3 cut(s)	150, 471, 1402
BspT104I	TTCGAA	2 cut(s)	349, 811
BspTI	CTTAAG	1 cut(s)	599
BsrBI	CCGCTC	2 cut(s)	334, 1412
BsrGI	TGTACA	1 cut(s)	1150
BsrI	ACTGG	4 cut(s)	161, 509, 556, 1136
BssECI	CCNNGG	2 cut(s)	1314, 1315
BssMI	GATC	4 cut(s)	1143, 1218, 1518, 1571
BssNI	GRCGYC	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	1560
Bst4CI	ACNGT	2 cut(s)	1179, 1343
Bst6I	CTCTTC	8 cut(s)	129, 150, 179, 185, 432, 471, 1402, 1558
BstACI	GRCGYC	1 cut(s)	242
BstAFI	CTTAAG	1 cut(s)	599
BstAPI	GCANNNNNTGC	1 cut(s)	364
BstAUI	TGTACA	1 cut(s)	1150
BstBAI	YACGTR	2 cut(s)	650, 989
BstBI	TTCGAA	2 cut(s)	349, 811
BstC8I	GCNNGC	5 cut(s)	606, 919, 984, 1167, 1239
BstDEI	CTNAG	4 cut(s)	264, 612, 663, 1044
BstENI	CCTNNNNNAGG	1 cut(s)	1563
BstF5I	GGATG	5 cut(s)	226, 389, 437, 807, 862
BstFNI	CGCG	2 cut(s)	297, 608
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	2 cut(s)	14, 299
BstKTI	GATC	4 cut(s)	1146, 1221, 1521, 1574
BstMAI	GTCTC	1 cut(s)	1040
BstMBI	GATC	4 cut(s)	1143, 1218, 1518, 1571
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 260, 364, 531, 877, 1243
BstNI	CCWGG	1 cut(s)	1560
BstNSI	RCATGY	2 cut(s)	371, 921
BstSCI	CCNGG	4 cut(s)	525, 1313, 1314, 1558
BstUI	CGCG	2 cut(s)	297, 608
BstV1I	GCAGC	3 cut(s)	272, 646, 1363
BstV2I	GAAGAC	1 cut(s)	203
BsuRI	GGCC	4 cut(s)	83, 461, 525, 885
BtsCI	GGATG	5 cut(s)	226, 389, 437, 807, 862
BtsIMutI	CAGTG	3 cut(s)	60, 1143, 1299
Cac8I	GCNNGC	5 cut(s)	606, 919, 984, 1167, 1239
CaiI	CAGNNNCTG	2 cut(s)	176, 215
CfoI	GCGC	2 cut(s)	14, 299
Cfr13I	GGNCC	1 cut(s)	1586
Cfr9I	CCCGGG	1 cut(s)	1314
CpoI	CGGWCCG	1 cut(s)	1586
CseI	GACGC	1 cut(s)	597
Csp6I	GTAC	2 cut(s)	990, 1151
CspCI	CAANNNNNGTGG	2 cut(s)	1122, 1157
CspI	CGGWCCG	1 cut(s)	1586
CviAII	CATG	6 cut(s)	368, 586, 918, 1001, 1284, 1522
CviQI	GTAC	2 cut(s)	990, 1151
DdeI	CTNAG	4 cut(s)	264, 612, 663, 1044
DpnI	GATC	4 cut(s)	1145, 1220, 1520, 1573
DpnII	GATC	4 cut(s)	1143, 1218, 1518, 1571
EaeI	YGGCCR	2 cut(s)	459, 523
Eam1104I	CTCTTC	8 cut(s)	129, 150, 179, 185, 432, 471, 1402, 1558
EarI	CTCTTC	8 cut(s)	129, 150, 179, 185, 432, 471, 1402, 1558
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	1586
Eco57I	CTGAAG	2 cut(s)	192, 1252
Eco72I	CACGTG	1 cut(s)	650
Eco88I	CYCGRG	1 cut(s)	1314
EcoNI	CCTNNNNNAGG	1 cut(s)	1563
EcoRII	CCWGG	1 cut(s)	1558
EcoT22I	ATGCAT	1 cut(s)	1002
FaeI	CATG	6 cut(s)	371, 589, 921, 1004, 1287, 1525
FatI	CATG	6 cut(s)	367, 585, 917, 1000, 1283, 1521
FauI	CCCGC	2 cut(s)	327, 1405
Fnu4HI	GCNGC	4 cut(s)	31, 261, 660, 1377
FokI	GGATG	5 cut(s)	233, 376, 444, 814, 869
Fsp4HI	GCNGC	4 cut(s)	31, 261, 660, 1377
FspBI	CTAG	1 cut(s)	1097
GlaI	GCGC	2 cut(s)	13, 298
GluI	GCNGC	4 cut(s)	31, 261, 660, 1377
HaeII	RGCGCY	1 cut(s)	15
HaeIII	GGCC	4 cut(s)	83, 461, 525, 885
HapII	CCGG	5 cut(s)	46, 526, 1315, 1390, 1584
HgaI	GACGC	1 cut(s)	597
HhaI	GCGC	2 cut(s)	14, 299
Hin1I	GRCGYC	1 cut(s)	242
Hin1II	CATG	6 cut(s)	371, 589, 921, 1004, 1287, 1525
Hin6I	GCGC	2 cut(s)	12, 297
HinP1I	GCGC	2 cut(s)	12, 297
HincII	GTYRAC	1 cut(s)	1261
HindII	GTYRAC	1 cut(s)	1261
HindIII	AAGCTT	1 cut(s)	821
HinfI	GANTC	9 cut(s)	75, 212, 225, 338, 634, 860, 902, 1123, 1367
HpaII	CCGG	5 cut(s)	46, 526, 1315, 1390, 1584
HphI	GGTGA	2 cut(s)	922, 1379
Hpy166II	GTNNAC	3 cut(s)	1082, 1261, 1614
Hpy188I	TCNGA	7 cut(s)	211, 412, 666, 865, 1045, 1228, 1271
Hpy188III	TCNNGA	6 cut(s)	72, 238, 398, 423, 558, 1364
Hpy8I	GTNNAC	3 cut(s)	1082, 1261, 1614
HpyAV	CCTTC	4 cut(s)	939, 1165, 1410, 1618
HpyCH4III	ACNGT	2 cut(s)	1179, 1343
HpyCH4IV	ACGT	3 cut(s)	242, 649, 988
HpyCH4V	TGCA	5 cut(s)	116, 367, 681, 986, 1000
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 260, 364, 531, 877, 1243
HpyF3I	CTNAG	4 cut(s)	264, 612, 663, 1044
HpySE526I	ACGT	3 cut(s)	242, 649, 988
Hsp92I	GRCGYC	1 cut(s)	242
Hsp92II	CATG	6 cut(s)	371, 589, 921, 1004, 1287, 1525
HspAI	GCGC	2 cut(s)	12, 297
Kzo9I	GATC	4 cut(s)	1143, 1218, 1518, 1571
LguI	GCTCTTC	3 cut(s)	150, 471, 1402
LmnI	GCTCC	2 cut(s)	550, 979
Lsp1109I	GCAGC	3 cut(s)	272, 646, 1363
LweI	GCATC	3 cut(s)	994, 1344, 1499
MaeI	CTAG	1 cut(s)	1097
MaeII	ACGT	3 cut(s)	242, 649, 988
MalI	GATC	4 cut(s)	1145, 1220, 1520, 1573
MbiI	CCGCTC	2 cut(s)	334, 1412
MboI	GATC	4 cut(s)	1143, 1218, 1518, 1571
MhlI	GDGCHC	1 cut(s)	547
MluI	ACGCGT	1 cut(s)	606
MlyI	GAGTC	3 cut(s)	221, 869, 1132
MmeI	TCCRAC	1 cut(s)	572
Mph1103I	ATGCAT	1 cut(s)	1002
MroXI	GAANNNNTTC	1 cut(s)	1455
MseI	TTAA	9 cut(s)	317, 416, 600, 714, 825, 830, 890, 1053, 1350
MslI	CAYNNNNRTG	1 cut(s)	590
MspCI	CTTAAG	1 cut(s)	599
MspI	CCGG	5 cut(s)	46, 526, 1315, 1390, 1584
MspR9I	CCNGG	4 cut(s)	527, 1315, 1316, 1560
Mva1269I	GAATGC	3 cut(s)	33, 536, 621
MvaI	CCWGG	1 cut(s)	1560
MvnI	CGCG	2 cut(s)	297, 608
MwoI	GCNNNNNNNGC	6 cut(s)	11, 260, 364, 531, 877, 1243
NciI	CCSGG	3 cut(s)	527, 1315, 1316
NdeII	GATC	4 cut(s)	1143, 1218, 1518, 1571
NlaIII	CATG	6 cut(s)	371, 589, 921, 1004, 1287, 1525
NlaIV	GGNNCC	2 cut(s)	582, 1509
NmeAIII	GCCGAG	1 cut(s)	487
NsiI	ATGCAT	1 cut(s)	1002
NspI	RCATGY	2 cut(s)	371, 921
NspV	TTCGAA	2 cut(s)	349, 811
PaeI	GCATGC	1 cut(s)	921
PciSI	GCTCTTC	3 cut(s)	150, 471, 1402
PctI	GAATGC	3 cut(s)	33, 536, 621
PdmI	GAANNNNTTC	1 cut(s)	1455
PfeI	GAWTC	6 cut(s)	75, 225, 338, 634, 902, 1367
PkrI	GCNGC	4 cut(s)	32, 262, 661, 1378
PleI	GAGTC	3 cut(s)	220, 868, 1131
PmaCI	CACGTG	1 cut(s)	650
PmlI	CACGTG	1 cut(s)	650
PpsI	GAGTC	3 cut(s)	220, 868, 1131
Ppu21I	YACGTR	2 cut(s)	650, 989
PshBI	ATTAAT	1 cut(s)	1350
Psp6I	CCWGG	1 cut(s)	1558
PspCI	CACGTG	1 cut(s)	650
PspGI	CCWGG	1 cut(s)	1558
PspN4I	GGNNCC	2 cut(s)	582, 1509
PspPI	GGNCC	1 cut(s)	1586
PstNI	CAGNNNCTG	2 cut(s)	176, 215
RsaI	GTAC	2 cut(s)	991, 1152
RsaNI	GTAC	2 cut(s)	990, 1151
RseI	CAYNNNNRTG	1 cut(s)	590
Rsr2I	CGGWCCG	1 cut(s)	1586
RsrII	CGGWCCG	1 cut(s)	1586
SapI	GCTCTTC	3 cut(s)	150, 471, 1402
SaqAI	TTAA	9 cut(s)	317, 416, 600, 714, 825, 830, 890, 1053, 1350
SatI	GCNGC	4 cut(s)	31, 261, 660, 1377
Sau3AI	GATC	4 cut(s)	1143, 1218, 1518, 1571
Sau96I	GGNCC	1 cut(s)	1586
SchI	GAGTC	3 cut(s)	221, 869, 1132
ScrFI	CCNGG	4 cut(s)	527, 1315, 1316, 1560
SduI	GDGCHC	1 cut(s)	547
SfaNI	GCATC	3 cut(s)	994, 1344, 1499
SfuI	TTCGAA	2 cut(s)	349, 811
SinI	GGWCC	1 cut(s)	1586
SmaI	CCCGGG	1 cut(s)	1316
SmiMI	CAYNNNNRTG	1 cut(s)	590
SmlI	CTYRAG	4 cut(s)	329, 398, 421, 599
SmoI	CTYRAG	4 cut(s)	329, 398, 421, 599
SphI	GCATGC	1 cut(s)	921
SsiI	CCGC	4 cut(s)	5, 30, 334, 1412
SspMI	CTAG	1 cut(s)	1097
StyD4I	CCNGG	4 cut(s)	525, 1313, 1314, 1558
TaaI	ACNGT	2 cut(s)	1179, 1343
TaiI	ACGT	3 cut(s)	245, 652, 991
TaqI	TCGA	8 cut(s)	78, 107, 341, 349, 625, 811, 1012, 1105
TaqII	GACCGA	1 cut(s)	1603
TatI	WGTACW	1 cut(s)	1150
TauI	GCSGC	1 cut(s)	33
TfiI	GAWTC	6 cut(s)	75, 225, 338, 634, 902, 1367
Tru1I	TTAA	9 cut(s)	317, 416, 600, 714, 825, 830, 890, 1053, 1350
Tru9I	TTAA	9 cut(s)	317, 416, 600, 714, 825, 830, 890, 1053, 1350
TscAI	CASTG	3 cut(s)	67, 1143, 1306
TseI	GCWGC	3 cut(s)	260, 659, 1376
TspDTI	ATGAA	6 cut(s)	6, 306, 608, 1464, 1611, 1671
TspGWI	ACGGA	4 cut(s)	215, 440, 814, 1483
TspMI	CCCGGG	1 cut(s)	1314
TspRI	CASTG	3 cut(s)	67, 1143, 1306
Vha464I	CTTAAG	1 cut(s)	599
VpaK11BI	GGWCC	1 cut(s)	1586
VspI	ATTAAT	1 cut(s)	1350
XagI	CCTNNNNNAGG	1 cut(s)	1563
XapI	RAATTY	3 cut(s)	403, 704, 1091
XceI	RCATGY	2 cut(s)	371, 921
XmaI	CCCGGG	1 cut(s)	1314
XmnI	GAANNNNTTC	1 cut(s)	1455
XspI	CTAG	1 cut(s)	1097
ZraI	GACGTC	1 cut(s)	243
Zsp2I	ATGCAT	1 cut(s)	1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.