DEAD-box ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G09720 AT3G09720 |
| fragaria_vesca | FvH4_6g15470 |
| malus_domestica | MD04G1103000.v1.1 MD12G1123200.v1.1 |
| prunus_persica | Prupe.6G240000_v2.0.a1 Prupe.6G240000_v2.0.a1 |
| pyrus_communis | pycom04g09810 pycom12g12190 |
| rosa_chinensis | RchiOBHm_Chr3g0468951 |
| rosa_laevigata | RLG00000024397 |
| rosa_multiflora | Rmu_co8069278.1_g000001 Rmu_co8291353.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00412430 |
| rosa_rugosa | Rorug03G0097800 |
| rosa_samantha | Rh3AG147400 Rh3BG170000 Rh3DG205000 |
| rosa_wichuraiana | Rw3G013880 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1697 |
| Acc36I | ACCTGC | 1 cut(s) | 358 |
| AccB1I | GGYRCC | 1 cut(s) | 1379 |
| AccBSI | CCGCTC | 2 cut(s) | 499, 1587 |
| AccII | CGCG | 3 cut(s) | 43, 49, 514 |
| AclWI | GGATC | 2 cut(s) | 727, 1691 |
| AcsI | RAATTY | 3 cut(s) | 288, 619, 869 |
| AcuI | CTGAAG | 2 cut(s) | 599, 1417 |
| AcvI | CACGTG | 1 cut(s) | 815 |
| AcyI | GRCGYC | 1 cut(s) | 192 |
| AfeI | AGCGCT | 1 cut(s) | 1266 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 664 |
| AflII | CTTAAG | 1 cut(s) | 764 |
| AflIII | ACRYGT | 1 cut(s) | 812 |
| AgsI | TTSAA | 6 cut(s) | 202, 484, 921, 1089, 1098, 1495 |
| AjnI | CCWGG | 1 cut(s) | 448 |
| Alw21I | GWGCWC | 1 cut(s) | 712 |
| AlwI | GGATC | 2 cut(s) | 727, 1691 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1535 |
| Ama87I | CYCGRG | 2 cut(s) | 494, 1479 |
| Aor51HI | AGCGCT | 1 cut(s) | 1266 |
| AoxI | GGCC | 1 cut(s) | 1689 |
| ApeKI | GCWGC | 4 cut(s) | 126, 425, 824, 1541 |
| ApoI | RAATTY | 3 cut(s) | 288, 619, 869 |
| AseI | ATTAAT | 1 cut(s) | 1515 |
| AspLEI | GCGC | 2 cut(s) | 1267, 1698 |
| AsuC2I | CCSGG | 2 cut(s) | 541, 1725 |
| AsuHPI | GGTGA | 3 cut(s) | 113, 137, 549 |
| AsuII | TTCGAA | 1 cut(s) | 285 |
| AvaI | CYCGRG | 2 cut(s) | 494, 1479 |
| BanI | GGYRCC | 1 cut(s) | 1379 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 96, 128 |
| BbrPI | CACGTG | 1 cut(s) | 815 |
| Bbv12I | GWGCWC | 1 cut(s) | 712 |
| BbvI | GCAGC | 4 cut(s) | 113, 437, 811, 1528 |
| BccI | CCATC | 2 cut(s) | 776, 847 |
| BciT130I | CCWGG | 1 cut(s) | 450 |
| BcnI | CCSGG | 2 cut(s) | 541, 1725 |
| BfaI | CTAG | 1 cut(s) | 461 |
| BfoI | RGCGCY | 1 cut(s) | 1268 |
| BfrI | CTTAAG | 1 cut(s) | 764 |
| BfuAI | ACCTGC | 1 cut(s) | 358 |
| BisI | GCNGC | 6 cut(s) | 127, 138, 426, 825, 1539, 1542 |
| BlsI | GCNGC | 6 cut(s) | 128, 139, 427, 826, 1540, 1543 |
| Bme1390I | CCNGG | 3 cut(s) | 450, 541, 1725 |
| BmeT110I | CYCGRG | 2 cut(s) | 494, 1479 |
| BmiI | GGNNCC | 2 cut(s) | 330, 1381 |
| BmrFI | CCNGG | 3 cut(s) | 450, 541, 1725 |
| BmsI | GCATC | 3 cut(s) | 587, 795, 1159 |
| BpmI | CTGGAG | 1 cut(s) | 214 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1335 |
| Bpu14I | TTCGAA | 1 cut(s) | 285 |
| BpuEI | CTTGAG | 1 cut(s) | 571 |
| BpuMI | CCSGG | 2 cut(s) | 541, 1725 |
| Bsa29I | ATCGAT | 1 cut(s) | 1736 |
| BsaAI | YACGTR | 1 cut(s) | 815 |
| BsaHI | GRCGYC | 1 cut(s) | 192 |
| BsaJI | CCNNGG | 2 cut(s) | 219, 375 |
| BsaWI | WCCGGW | 1 cut(s) | 204 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 664 |
| Bse118I | RCCGGY | 1 cut(s) | 340 |
| Bse1I | ACTGG | 4 cut(s) | 332, 674, 721, 1301 |
| Bse3DI | GCAATG | 1 cut(s) | 460 |
| BseBI | CCWGG | 1 cut(s) | 450 |
| BseCI | ATCGAT | 1 cut(s) | 1736 |
| BseDI | CCNNGG | 2 cut(s) | 219, 375 |
| BseGI | GGATG | 5 cut(s) | 549, 602, 786, 787, 1027 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 664 |
| BseMI | GCAATG | 1 cut(s) | 460 |
| BseMII | CTCAG | 2 cut(s) | 291, 842 |
| BseNI | ACTGG | 4 cut(s) | 332, 674, 721, 1301 |
| BseRI | GAGGAG | 3 cut(s) | 341, 1157, 1597 |
| BseXI | GCAGC | 4 cut(s) | 113, 437, 811, 1528 |
| Bsh1236I | CGCG | 3 cut(s) | 43, 49, 514 |
| Bsh1285I | CGRYCG | 1 cut(s) | 47 |
| BshFI | GGCC | 1 cut(s) | 1691 |
| BshNI | GGYRCC | 1 cut(s) | 1379 |
| BshVI | ATCGAT | 1 cut(s) | 1736 |
| BsiEI | CGRYCG | 1 cut(s) | 47 |
| BsiHKAI | GWGCWC | 1 cut(s) | 712 |
| BsiHKCI | CYCGRG | 2 cut(s) | 494, 1479 |
| BsiSI | CCGG | 5 cut(s) | 189, 205, 341, 540, 1725 |
| BslFI | GGGAC | 1 cut(s) | 732 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 664 |
| BsmFI | GGGAC | 1 cut(s) | 732 |
| BsmI | GAATGC | 1 cut(s) | 701 |
| BsnI | GGCC | 1 cut(s) | 1691 |
| BsoBI | CYCGRG | 2 cut(s) | 494, 1479 |
| Bsp119I | TTCGAA | 1 cut(s) | 285 |
| Bsp1286I | GDGCHC | 1 cut(s) | 712 |
| Bsp143I | GATC | 3 cut(s) | 719, 1393, 1683 |
| BspANI | GGCC | 1 cut(s) | 1691 |
| BspCNI | CTCAG | 2 cut(s) | 292, 841 |
| BspDI | ATCGAT | 1 cut(s) | 1736 |
| BspFNI | CGCG | 3 cut(s) | 43, 49, 514 |
| BspLI | GGNNCC | 2 cut(s) | 330, 1381 |
| BspMI | ACCTGC | 1 cut(s) | 358 |
| BspPI | GGATC | 2 cut(s) | 727, 1691 |
| BspQI | GCTCTTC | 1 cut(s) | 49 |
| BspT104I | TTCGAA | 1 cut(s) | 285 |
| BspT107I | GGYRCC | 1 cut(s) | 1379 |
| BspTI | CTTAAG | 1 cut(s) | 764 |
| BsrBI | CCGCTC | 2 cut(s) | 499, 1587 |
| BsrDI | GCAATG | 1 cut(s) | 460 |
| BsrFI | RCCGGY | 1 cut(s) | 340 |
| BsrI | ACTGG | 4 cut(s) | 332, 674, 721, 1301 |
| BssAI | RCCGGY | 1 cut(s) | 340 |
| BssECI | CCNNGG | 2 cut(s) | 219, 375 |
| BssMI | GATC | 3 cut(s) | 719, 1393, 1683 |
| BssNI | GRCGYC | 1 cut(s) | 192 |
| Bst2UI | CCWGG | 1 cut(s) | 450 |
| Bst4CI | ACNGT | 3 cut(s) | 966, 1356, 1508 |
| Bst6I | CTCTTC | 3 cut(s) | 49, 344, 1723 |
| BstACI | GRCGYC | 1 cut(s) | 192 |
| BstAFI | CTTAAG | 1 cut(s) | 764 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 908 |
| BstBAI | YACGTR | 1 cut(s) | 815 |
| BstBI | TTCGAA | 1 cut(s) | 285 |
| BstC8I | GCNNGC | 6 cut(s) | 602, 666, 900, 1149, 1153, 1332 |
| BstDEI | CTNAG | 4 cut(s) | 300, 777, 828, 1335 |
| BstDSI | CCRYGG | 1 cut(s) | 219 |
| BstF5I | GGATG | 5 cut(s) | 549, 602, 786, 787, 1027 |
| BstFNI | CGCG | 3 cut(s) | 43, 49, 514 |
| BstH2I | RGCGCY | 1 cut(s) | 1268 |
| BstHHI | GCGC | 2 cut(s) | 1267, 1698 |
| BstKTI | GATC | 3 cut(s) | 722, 1396, 1686 |
| BstMBI | GATC | 3 cut(s) | 719, 1393, 1683 |
| BstMCI | CGRYCG | 1 cut(s) | 47 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 337, 364, 425, 431, 496, 505, 908, 1042, 1264 |
| BstNI | CCWGG | 1 cut(s) | 450 |
| BstNSI | RCATGY | 1 cut(s) | 1086 |
| BstSCI | CCNGG | 3 cut(s) | 448, 539, 1723 |
| BstUI | CGCG | 3 cut(s) | 43, 49, 514 |
| BstV1I | GCAGC | 4 cut(s) | 113, 437, 811, 1528 |
| BstX2I | RGATCY | 1 cut(s) | 719 |
| BstYI | RGATCY | 1 cut(s) | 719 |
| Bsu15I | ATCGAT | 1 cut(s) | 1736 |
| BsuRI | GGCC | 1 cut(s) | 1691 |
| BsuTUI | ATCGAT | 1 cut(s) | 1736 |
| BtgI | CCRYGG | 1 cut(s) | 219 |
| BtsCI | GGATG | 5 cut(s) | 549, 602, 786, 787, 1027 |
| BtsIMutI | CAGTG | 2 cut(s) | 1308, 1464 |
| BveI | ACCTGC | 1 cut(s) | 358 |
| Cac8I | GCNNGC | 6 cut(s) | 602, 666, 900, 1149, 1153, 1332 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1535 |
| CfoI | GCGC | 2 cut(s) | 1267, 1698 |
| Cfr10I | RCCGGY | 1 cut(s) | 340 |
| ClaI | ATCGAT | 1 cut(s) | 1736 |
| CseI | GACGC | 2 cut(s) | 181, 520 |
| CviAII | CATG | 7 cut(s) | 160, 533, 751, 1083, 1166, 1449, 1687 |
| DdeI | CTNAG | 4 cut(s) | 300, 777, 828, 1335 |
| DpnI | GATC | 3 cut(s) | 721, 1395, 1685 |
| DpnII | GATC | 3 cut(s) | 719, 1393, 1683 |
| DraI | TTTAAA | 2 cut(s) | 10, 640 |
| Eam1104I | CTCTTC | 3 cut(s) | 49, 344, 1723 |
| EarI | CTCTTC | 3 cut(s) | 49, 344, 1723 |
| EciI | GGCGGA | 1 cut(s) | 320 |
| Eco32I | GATATC | 1 cut(s) | 1740 |
| Eco47III | AGCGCT | 1 cut(s) | 1266 |
| Eco57I | CTGAAG | 2 cut(s) | 599, 1417 |
| Eco72I | CACGTG | 1 cut(s) | 815 |
| Eco88I | CYCGRG | 2 cut(s) | 494, 1479 |
| EcoRII | CCWGG | 1 cut(s) | 448 |
| EcoRV | GATATC | 1 cut(s) | 1740 |
| EcoT22I | ATGCAT | 1 cut(s) | 1167 |
| FaeI | CATG | 7 cut(s) | 163, 536, 754, 1086, 1169, 1452, 1690 |
| FaqI | GGGAC | 1 cut(s) | 732 |
| FatI | CATG | 7 cut(s) | 159, 532, 750, 1082, 1165, 1448, 1686 |
| FauI | CCCGC | 5 cut(s) | 42, 102, 156, 492, 1160 |
| Fnu4HI | GCNGC | 6 cut(s) | 127, 138, 426, 825, 1539, 1542 |
| FokI | GGATG | 5 cut(s) | 536, 609, 773, 794, 1034 |
| Fsp4HI | GCNGC | 6 cut(s) | 127, 138, 426, 825, 1539, 1542 |
| FspBI | CTAG | 1 cut(s) | 461 |
| FspI | TGCGCA | 1 cut(s) | 1697 |
| GlaI | GCGC | 2 cut(s) | 1266, 1697 |
| GluI | GCNGC | 6 cut(s) | 127, 138, 426, 825, 1539, 1542 |
| GsuI | CTGGAG | 1 cut(s) | 214 |
| HaeII | RGCGCY | 1 cut(s) | 1268 |
| HaeIII | GGCC | 1 cut(s) | 1691 |
| HapII | CCGG | 5 cut(s) | 189, 205, 341, 540, 1725 |
| HgaI | GACGC | 2 cut(s) | 181, 520 |
| HhaI | GCGC | 2 cut(s) | 1267, 1698 |
| Hin1I | GRCGYC | 1 cut(s) | 192 |
| Hin1II | CATG | 7 cut(s) | 163, 536, 754, 1086, 1169, 1452, 1690 |
| Hin6I | GCGC | 2 cut(s) | 1265, 1696 |
| HinP1I | GCGC | 2 cut(s) | 1265, 1696 |
| HincII | GTYRAC | 3 cut(s) | 196, 1504, 1656 |
| HindII | GTYRAC | 3 cut(s) | 196, 1504, 1656 |
| HindIII | AAGCTT | 1 cut(s) | 1034 |
| HpaII | CCGG | 5 cut(s) | 189, 205, 341, 540, 1725 |
| HphI | GGTGA | 3 cut(s) | 113, 137, 549 |
| Hpy166II | GTNNAC | 4 cut(s) | 196, 1504, 1571, 1656 |
| Hpy188III | TCNNGA | 7 cut(s) | 231, 238, 588, 692, 723, 976, 1529 |
| Hpy8I | GTNNAC | 4 cut(s) | 196, 1504, 1571, 1656 |
| HpyCH4III | ACNGT | 3 cut(s) | 966, 1356, 1508 |
| HpyCH4IV | ACGT | 1 cut(s) | 814 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 575, 846, 902, 1165, 1421 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 337, 364, 425, 431, 496, 505, 908, 1042, 1264 |
| HpyF3I | CTNAG | 4 cut(s) | 300, 777, 828, 1335 |
| HpySE526I | ACGT | 1 cut(s) | 814 |
| Hsp92I | GRCGYC | 1 cut(s) | 192 |
| Hsp92II | CATG | 7 cut(s) | 163, 536, 754, 1086, 1169, 1452, 1690 |
| HspAI | GCGC | 2 cut(s) | 1265, 1696 |
| Kzo9I | GATC | 3 cut(s) | 719, 1393, 1683 |
| LguI | GCTCTTC | 1 cut(s) | 49 |
| LmnI | GCTCC | 7 cut(s) | 328, 466, 715, 1112, 1144, 1327, 1584 |
| Lsp1109I | GCAGC | 4 cut(s) | 113, 437, 811, 1528 |
| LweI | GCATC | 3 cut(s) | 587, 795, 1159 |
| MaeI | CTAG | 1 cut(s) | 461 |
| MaeII | ACGT | 1 cut(s) | 814 |
| MaeIII | GTNAC | 6 cut(s) | 13, 27, 103, 143, 960, 1398 |
| MalI | GATC | 3 cut(s) | 721, 1395, 1685 |
| MbiI | CCGCTC | 2 cut(s) | 499, 1587 |
| MboI | GATC | 3 cut(s) | 719, 1393, 1683 |
| MboII | GAAGA | 9 cut(s) | 66, 176, 253, 281, 361, 484, 487, 1259, 1740 |
| MflI | RGATCY | 1 cut(s) | 719 |
| MhlI | GDGCHC | 1 cut(s) | 712 |
| MlyI | GAGTC | 3 cut(s) | 78, 1034, 1297 |
| MmeI | TCCRAC | 2 cut(s) | 737, 833 |
| Mph1103I | ATGCAT | 1 cut(s) | 1167 |
| MslI | CAYNNNNRTG | 3 cut(s) | 533, 755, 1160 |
| MspA1I | CMGCKG | 2 cut(s) | 126, 1541 |
| MspCI | CTTAAG | 1 cut(s) | 764 |
| MspI | CCGG | 5 cut(s) | 189, 205, 341, 540, 1725 |
| MspR9I | CCNGG | 3 cut(s) | 450, 541, 1725 |
| Mva1269I | GAATGC | 1 cut(s) | 701 |
| MvaI | CCWGG | 1 cut(s) | 450 |
| MvnI | CGCG | 3 cut(s) | 43, 49, 514 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 337, 364, 425, 431, 496, 505, 908, 1042, 1264 |
| NciI | CCSGG | 2 cut(s) | 541, 1725 |
| NdeII | GATC | 3 cut(s) | 719, 1393, 1683 |
| NlaIII | CATG | 7 cut(s) | 163, 536, 754, 1086, 1169, 1452, 1690 |
| NlaIV | GGNNCC | 2 cut(s) | 330, 1381 |
| NmuCI | GTSAC | 2 cut(s) | 143, 1398 |
| NsbI | TGCGCA | 1 cut(s) | 1697 |
| NsiI | ATGCAT | 1 cut(s) | 1167 |
| NspI | RCATGY | 1 cut(s) | 1086 |
| NspV | TTCGAA | 1 cut(s) | 285 |
| PaeR7I | CTCGAG | 1 cut(s) | 494 |
| PciSI | GCTCTTC | 1 cut(s) | 49 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1570 |
| PctI | GAATGC | 1 cut(s) | 701 |
| PfeI | GAWTC | 8 cut(s) | 234, 272, 484, 503, 1067, 1294, 1532, 1733 |
| PfoI | TCCNGGA | 1 cut(s) | 539 |
| PkrI | GCNGC | 6 cut(s) | 128, 139, 427, 826, 1540, 1543 |
| PleI | GAGTC | 3 cut(s) | 78, 1033, 1296 |
| PmaCI | CACGTG | 1 cut(s) | 815 |
| PmlI | CACGTG | 1 cut(s) | 815 |
| PpsI | GAGTC | 3 cut(s) | 78, 1033, 1296 |
| Ppu21I | YACGTR | 1 cut(s) | 815 |
| PshBI | ATTAAT | 1 cut(s) | 1515 |
| Psp6I | CCWGG | 1 cut(s) | 448 |
| PspCI | CACGTG | 1 cut(s) | 815 |
| PspGI | CCWGG | 1 cut(s) | 448 |
| PspN4I | GGNNCC | 2 cut(s) | 330, 1381 |
| PspXI | VCTCGAGB | 1 cut(s) | 494 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1535 |
| PsuI | RGATCY | 1 cut(s) | 719 |
| RseI | CAYNNNNRTG | 3 cut(s) | 533, 755, 1160 |
| SapI | GCTCTTC | 1 cut(s) | 49 |
| SatI | GCNGC | 6 cut(s) | 127, 138, 426, 825, 1539, 1542 |
| Sau3AI | GATC | 3 cut(s) | 719, 1393, 1683 |
| SchI | GAGTC | 3 cut(s) | 78, 1034, 1297 |
| ScrFI | CCNGG | 3 cut(s) | 450, 541, 1725 |
| SduI | GDGCHC | 1 cut(s) | 712 |
| SfaNI | GCATC | 3 cut(s) | 587, 795, 1159 |
| Sfr274I | CTCGAG | 1 cut(s) | 494 |
| SfuI | TTCGAA | 1 cut(s) | 285 |
| SlaI | CTCGAG | 1 cut(s) | 494 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 533, 755, 1160 |
| SmlI | CTYRAG | 3 cut(s) | 494, 586, 764 |
| SmoI | CTYRAG | 3 cut(s) | 494, 586, 764 |
| SspMI | CTAG | 1 cut(s) | 461 |
| StyD4I | CCNGG | 3 cut(s) | 448, 539, 1723 |
| TaaI | ACNGT | 3 cut(s) | 966, 1356, 1508 |
| TaiI | ACGT | 1 cut(s) | 817 |
| TaqI | TCGA | 6 cut(s) | 275, 285, 495, 691, 1177, 1736 |
| TauI | GCSGC | 2 cut(s) | 140, 1541 |
| TfiI | GAWTC | 8 cut(s) | 234, 272, 484, 503, 1067, 1294, 1532, 1733 |
| TscAI | CASTG | 2 cut(s) | 1308, 1471 |
| TseFI | GTSAC | 2 cut(s) | 143, 1398 |
| TseI | GCWGC | 4 cut(s) | 126, 425, 824, 1541 |
| Tsp45I | GTSAC | 2 cut(s) | 143, 1398 |
| TspDTI | ATGAA | 4 cut(s) | 165, 471, 521, 773 |
| TspGWI | ACGGA | 5 cut(s) | 46, 236, 1362, 1648, 1665 |
| TspRI | CASTG | 2 cut(s) | 1308, 1471 |
| Vha464I | CTTAAG | 1 cut(s) | 764 |
| VspI | ATTAAT | 1 cut(s) | 1515 |
| XapI | RAATTY | 3 cut(s) | 288, 619, 869 |
| XceI | RCATGY | 1 cut(s) | 1086 |
| XhoI | CTCGAG | 1 cut(s) | 494 |
| XspI | CTAG | 1 cut(s) | 461 |
| Zsp2I | ATGCAT | 1 cut(s) | 1167 |