pycom04g09810

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
12568603 .. 12572829
4227 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g09810.3

Sequence Viewer

Length: 1770 bp
ATGCAATTTAAAGTAACTATATGGCGGTTACGGAAGCACTCGCGGTCGCGGGGAAGAGCAAAAGCCGAAGGGTTTAACGAGCGACTCATAAACCCGCAAATTGTAACAGAGCTTCCACTTCACCGCTGCCAATTCGCCGCCTGTCACCCGCCTCCAATCATGGAAGAAGGCACTTCATTTTTGTTCTCCGGCGTCAACTTCAACCGGAAAAAGTTTGCCACGGACTTCTCCAGATTCCAGAAGAACAAAGAGAGCGAGAAAGTGGTAGAAGATTCGAGCTTGTTCGAAATTCCAAAATCTGAGGCGGAGGTGGAGGCAGAGAAGGAGGAGCCAGTAGTGCCGGTTAAGAAGAGGAAGCGGAAGGGGCAGGTTTCCGAGGGTGTGGAGGGGATTAGTGTCTTTAAGACCTCAAAATCGGCGAAGGCAGCGAAAGCGGAGAAAGAGAAGCCTGGCAATGAACTAGCGGAGCAGAAGAAGAAGTTGAATCGGCAACTCGAGCGGGATTCGCTGACGCGAAAGAAGTATGACATTCATGTGTCCGGGAATAACATCCCTTCACCGCTTGATAATTTTGCAGACTTAACCTCAAGATATGGATGCGAGCCATATTTACTTCAGAATTTGGCAGAACTTGGATTTAAACAACCAACGCCAATCCAAAGGCAGGCTATTCCAGTCCTCTTATCTGGTCGAGAATGCTTTGCTTGTGCTCCGACTGGATCTGGAAAAACTCTTGCTTTTGTTTGTCCCATGCTAATGAAACTTAAGCATACATCTAAGGATGGCATCCGAGCTGTTATTCTTTGTCCAACACGTGAGTTAGCTGCTCAGACAACCAGAGAGTGCAAAAAGATGGCAAAAGGAAATAAATTCTACATCAAGTTAATGACCAAAGAGCTTGCAAGAAATGCCGATTTTTCAAAAATACGCTGTGATATACTCATTTCTACTCCACTTCGGTTACGGTTGGCTATCCAGAAAAAGAAGGTTGATTTAAGCAGGGTTGAGTATCTGGTATTGGATGAGTCTGATAAGCTTTTTGAGCTTGGCTTGTTAAAGCAGATTGATTCTGTGGTCAAAGCATGTTCAAACCCTTCAATTATTCGCTCCTTGTTTAGTGCTACTTTACCTGATTTCGTTGAGGAGCTTGCCCGCACTATAATGCATGATGCTGTTCGAGTTATCATTGGCAGGAAAAATACTGCTTCTGACACTATCAAGCAAAAATTGGTCTTTGCTGGAAGTGAAGAAGGGAAGCTATTAGCGCTTCGTCAATGTTTTAAGGAGAGTCTGAATCCACCAGTGCTGATATTTTTACAAAGCAAGGAGCGAGCTAAGGAACTCTACGGAGAACTGTTGTTTGAGAATGTAAGAGTTGGTGCCATACATTCTGATCTGTCACAAACACAGCGAGAAAATGCAGTAGATGACTTCAGAGCTGGAAAAACATGGGTTTTAATTGCCACTGATGTTATTGCTCGGGGTATGGATTTCAAAGGTGTCAACTGTGTGATTAATTATGATTTTCCAGATTCTGCCGCTGCCTACATTCACAGGATTGGTCGGTGTGGACGAGCAGGGAGGAGCGGAGAAGCTATTACTTTCTACACAGAGGTAGATATTCCATATCTACGGAATATAGCTAATGTGATGTCAACATCAGGTTGTGAAGTTCCGTCTTGGATCATGGCCTTGCGCAAACAGAAGTGGAAAAAACACCGACCCGGAAGAGAATCGATATCAACCCAACCGAAAGATGAGAAGGAGTAA

Protein Analysis

590

Amino Acids

66.52

Weight (kDa)

9.53

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012094)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1697
Acc36I ACCTGC 1 cut(s) 358
AccB1I GGYRCC 1 cut(s) 1379
AccBSI CCGCTC 2 cut(s) 499, 1587
AccII CGCG 3 cut(s) 43, 49, 514
AclWI GGATC 2 cut(s) 727, 1691
AcsI RAATTY 3 cut(s) 288, 619, 869
AcuI CTGAAG 2 cut(s) 599, 1417
AcvI CACGTG 1 cut(s) 815
AcyI GRCGYC 1 cut(s) 192
AfeI AGCGCT 1 cut(s) 1266
AfiI CCNNNNNNNGG 1 cut(s) 664
AflII CTTAAG 1 cut(s) 764
AflIII ACRYGT 1 cut(s) 812
AgsI TTSAA 6 cut(s) 202, 484, 921, 1089, 1098, 1495
AjnI CCWGG 1 cut(s) 448
Alw21I GWGCWC 1 cut(s) 712
AlwI GGATC 2 cut(s) 727, 1691
AlwNI CAGNNNCTG 1 cut(s) 1535
Ama87I CYCGRG 2 cut(s) 494, 1479
Aor51HI AGCGCT 1 cut(s) 1266
AoxI GGCC 1 cut(s) 1689
ApeKI GCWGC 4 cut(s) 126, 425, 824, 1541
ApoI RAATTY 3 cut(s) 288, 619, 869
AseI ATTAAT 1 cut(s) 1515
AspLEI GCGC 2 cut(s) 1267, 1698
AsuC2I CCSGG 2 cut(s) 541, 1725
AsuHPI GGTGA 3 cut(s) 113, 137, 549
AsuII TTCGAA 1 cut(s) 285
AvaI CYCGRG 2 cut(s) 494, 1479
BanI GGYRCC 1 cut(s) 1379
BarI GAAGNNNNNNTAC 2 cut(s) 96, 128
BbrPI CACGTG 1 cut(s) 815
Bbv12I GWGCWC 1 cut(s) 712
BbvI GCAGC 4 cut(s) 113, 437, 811, 1528
BccI CCATC 2 cut(s) 776, 847
BciT130I CCWGG 1 cut(s) 450
BcnI CCSGG 2 cut(s) 541, 1725
BfaI CTAG 1 cut(s) 461
BfoI RGCGCY 1 cut(s) 1268
BfrI CTTAAG 1 cut(s) 764
BfuAI ACCTGC 1 cut(s) 358
BisI GCNGC 6 cut(s) 127, 138, 426, 825, 1539, 1542
BlsI GCNGC 6 cut(s) 128, 139, 427, 826, 1540, 1543
Bme1390I CCNGG 3 cut(s) 450, 541, 1725
BmeT110I CYCGRG 2 cut(s) 494, 1479
BmiI GGNNCC 2 cut(s) 330, 1381
BmrFI CCNGG 3 cut(s) 450, 541, 1725
BmsI GCATC 3 cut(s) 587, 795, 1159
BpmI CTGGAG 1 cut(s) 214
Bpu10I CCTNAGC 1 cut(s) 1335
Bpu14I TTCGAA 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 571
BpuMI CCSGG 2 cut(s) 541, 1725
Bsa29I ATCGAT 1 cut(s) 1736
BsaAI YACGTR 1 cut(s) 815
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 219, 375
BsaWI WCCGGW 1 cut(s) 204
Bsc4I CCNNNNNNNGG 1 cut(s) 664
Bse118I RCCGGY 1 cut(s) 340
Bse1I ACTGG 4 cut(s) 332, 674, 721, 1301
Bse3DI GCAATG 1 cut(s) 460
BseBI CCWGG 1 cut(s) 450
BseCI ATCGAT 1 cut(s) 1736
BseDI CCNNGG 2 cut(s) 219, 375
BseGI GGATG 5 cut(s) 549, 602, 786, 787, 1027
BseLI CCNNNNNNNGG 1 cut(s) 664
BseMI GCAATG 1 cut(s) 460
BseMII CTCAG 2 cut(s) 291, 842
BseNI ACTGG 4 cut(s) 332, 674, 721, 1301
BseRI GAGGAG 3 cut(s) 341, 1157, 1597
BseXI GCAGC 4 cut(s) 113, 437, 811, 1528
Bsh1236I CGCG 3 cut(s) 43, 49, 514
Bsh1285I CGRYCG 1 cut(s) 47
BshFI GGCC 1 cut(s) 1691
BshNI GGYRCC 1 cut(s) 1379
BshVI ATCGAT 1 cut(s) 1736
BsiEI CGRYCG 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 712
BsiHKCI CYCGRG 2 cut(s) 494, 1479
BsiSI CCGG 5 cut(s) 189, 205, 341, 540, 1725
BslFI GGGAC 1 cut(s) 732
BslI CCNNNNNNNGG 1 cut(s) 664
BsmFI GGGAC 1 cut(s) 732
BsmI GAATGC 1 cut(s) 701
BsnI GGCC 1 cut(s) 1691
BsoBI CYCGRG 2 cut(s) 494, 1479
Bsp119I TTCGAA 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 712
Bsp143I GATC 3 cut(s) 719, 1393, 1683
BspANI GGCC 1 cut(s) 1691
BspCNI CTCAG 2 cut(s) 292, 841
BspDI ATCGAT 1 cut(s) 1736
BspFNI CGCG 3 cut(s) 43, 49, 514
BspLI GGNNCC 2 cut(s) 330, 1381
BspMI ACCTGC 1 cut(s) 358
BspPI GGATC 2 cut(s) 727, 1691
BspQI GCTCTTC 1 cut(s) 49
BspT104I TTCGAA 1 cut(s) 285
BspT107I GGYRCC 1 cut(s) 1379
BspTI CTTAAG 1 cut(s) 764
BsrBI CCGCTC 2 cut(s) 499, 1587
BsrDI GCAATG 1 cut(s) 460
BsrFI RCCGGY 1 cut(s) 340
BsrI ACTGG 4 cut(s) 332, 674, 721, 1301
BssAI RCCGGY 1 cut(s) 340
BssECI CCNNGG 2 cut(s) 219, 375
BssMI GATC 3 cut(s) 719, 1393, 1683
BssNI GRCGYC 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 450
Bst4CI ACNGT 3 cut(s) 966, 1356, 1508
Bst6I CTCTTC 3 cut(s) 49, 344, 1723
BstACI GRCGYC 1 cut(s) 192
BstAFI CTTAAG 1 cut(s) 764
BstAPI GCANNNNNTGC 1 cut(s) 908
BstBAI YACGTR 1 cut(s) 815
BstBI TTCGAA 1 cut(s) 285
BstC8I GCNNGC 6 cut(s) 602, 666, 900, 1149, 1153, 1332
BstDEI CTNAG 4 cut(s) 300, 777, 828, 1335
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 5 cut(s) 549, 602, 786, 787, 1027
BstFNI CGCG 3 cut(s) 43, 49, 514
BstH2I RGCGCY 1 cut(s) 1268
BstHHI GCGC 2 cut(s) 1267, 1698
BstKTI GATC 3 cut(s) 722, 1396, 1686
BstMBI GATC 3 cut(s) 719, 1393, 1683
BstMCI CGRYCG 1 cut(s) 47
BstMWI GCNNNNNNNGC 9 cut(s) 337, 364, 425, 431, 496, 505, 908, 1042, 1264
BstNI CCWGG 1 cut(s) 450
BstNSI RCATGY 1 cut(s) 1086
BstSCI CCNGG 3 cut(s) 448, 539, 1723
BstUI CGCG 3 cut(s) 43, 49, 514
BstV1I GCAGC 4 cut(s) 113, 437, 811, 1528
BstX2I RGATCY 1 cut(s) 719
BstYI RGATCY 1 cut(s) 719
Bsu15I ATCGAT 1 cut(s) 1736
BsuRI GGCC 1 cut(s) 1691
BsuTUI ATCGAT 1 cut(s) 1736
BtgI CCRYGG 1 cut(s) 219
BtsCI GGATG 5 cut(s) 549, 602, 786, 787, 1027
BtsIMutI CAGTG 2 cut(s) 1308, 1464
BveI ACCTGC 1 cut(s) 358
Cac8I GCNNGC 6 cut(s) 602, 666, 900, 1149, 1153, 1332
CaiI CAGNNNCTG 1 cut(s) 1535
CfoI GCGC 2 cut(s) 1267, 1698
Cfr10I RCCGGY 1 cut(s) 340
ClaI ATCGAT 1 cut(s) 1736
CseI GACGC 2 cut(s) 181, 520
CviAII CATG 7 cut(s) 160, 533, 751, 1083, 1166, 1449, 1687
DdeI CTNAG 4 cut(s) 300, 777, 828, 1335
DpnI GATC 3 cut(s) 721, 1395, 1685
DpnII GATC 3 cut(s) 719, 1393, 1683
DraI TTTAAA 2 cut(s) 10, 640
Eam1104I CTCTTC 3 cut(s) 49, 344, 1723
EarI CTCTTC 3 cut(s) 49, 344, 1723
EciI GGCGGA 1 cut(s) 320
Eco32I GATATC 1 cut(s) 1740
Eco47III AGCGCT 1 cut(s) 1266
Eco57I CTGAAG 2 cut(s) 599, 1417
Eco72I CACGTG 1 cut(s) 815
Eco88I CYCGRG 2 cut(s) 494, 1479
EcoRII CCWGG 1 cut(s) 448
EcoRV GATATC 1 cut(s) 1740
EcoT22I ATGCAT 1 cut(s) 1167
FaeI CATG 7 cut(s) 163, 536, 754, 1086, 1169, 1452, 1690
FaqI GGGAC 1 cut(s) 732
FatI CATG 7 cut(s) 159, 532, 750, 1082, 1165, 1448, 1686
FauI CCCGC 5 cut(s) 42, 102, 156, 492, 1160
Fnu4HI GCNGC 6 cut(s) 127, 138, 426, 825, 1539, 1542
FokI GGATG 5 cut(s) 536, 609, 773, 794, 1034
Fsp4HI GCNGC 6 cut(s) 127, 138, 426, 825, 1539, 1542
FspBI CTAG 1 cut(s) 461
FspI TGCGCA 1 cut(s) 1697
GlaI GCGC 2 cut(s) 1266, 1697
GluI GCNGC 6 cut(s) 127, 138, 426, 825, 1539, 1542
GsuI CTGGAG 1 cut(s) 214
HaeII RGCGCY 1 cut(s) 1268
HaeIII GGCC 1 cut(s) 1691
HapII CCGG 5 cut(s) 189, 205, 341, 540, 1725
HgaI GACGC 2 cut(s) 181, 520
HhaI GCGC 2 cut(s) 1267, 1698
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 7 cut(s) 163, 536, 754, 1086, 1169, 1452, 1690
Hin6I GCGC 2 cut(s) 1265, 1696
HinP1I GCGC 2 cut(s) 1265, 1696
HincII GTYRAC 3 cut(s) 196, 1504, 1656
HindII GTYRAC 3 cut(s) 196, 1504, 1656
HindIII AAGCTT 1 cut(s) 1034
HpaII CCGG 5 cut(s) 189, 205, 341, 540, 1725
HphI GGTGA 3 cut(s) 113, 137, 549
Hpy166II GTNNAC 4 cut(s) 196, 1504, 1571, 1656
Hpy188III TCNNGA 7 cut(s) 231, 238, 588, 692, 723, 976, 1529
Hpy8I GTNNAC 4 cut(s) 196, 1504, 1571, 1656
HpyCH4III ACNGT 3 cut(s) 966, 1356, 1508
HpyCH4IV ACGT 1 cut(s) 814
HpyCH4V TGCA 6 cut(s) 4, 575, 846, 902, 1165, 1421
HpyF10VI GCNNNNNNNGC 9 cut(s) 337, 364, 425, 431, 496, 505, 908, 1042, 1264
HpyF3I CTNAG 4 cut(s) 300, 777, 828, 1335
HpySE526I ACGT 1 cut(s) 814
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 7 cut(s) 163, 536, 754, 1086, 1169, 1452, 1690
HspAI GCGC 2 cut(s) 1265, 1696
Kzo9I GATC 3 cut(s) 719, 1393, 1683
LguI GCTCTTC 1 cut(s) 49
LmnI GCTCC 7 cut(s) 328, 466, 715, 1112, 1144, 1327, 1584
Lsp1109I GCAGC 4 cut(s) 113, 437, 811, 1528
LweI GCATC 3 cut(s) 587, 795, 1159
MaeI CTAG 1 cut(s) 461
MaeII ACGT 1 cut(s) 814
MaeIII GTNAC 6 cut(s) 13, 27, 103, 143, 960, 1398
MalI GATC 3 cut(s) 721, 1395, 1685
MbiI CCGCTC 2 cut(s) 499, 1587
MboI GATC 3 cut(s) 719, 1393, 1683
MboII GAAGA 9 cut(s) 66, 176, 253, 281, 361, 484, 487, 1259, 1740
MflI RGATCY 1 cut(s) 719
MhlI GDGCHC 1 cut(s) 712
MlyI GAGTC 3 cut(s) 78, 1034, 1297
MmeI TCCRAC 2 cut(s) 737, 833
Mph1103I ATGCAT 1 cut(s) 1167
MslI CAYNNNNRTG 3 cut(s) 533, 755, 1160
MspA1I CMGCKG 2 cut(s) 126, 1541
MspCI CTTAAG 1 cut(s) 764
MspI CCGG 5 cut(s) 189, 205, 341, 540, 1725
MspR9I CCNGG 3 cut(s) 450, 541, 1725
Mva1269I GAATGC 1 cut(s) 701
MvaI CCWGG 1 cut(s) 450
MvnI CGCG 3 cut(s) 43, 49, 514
MwoI GCNNNNNNNGC 9 cut(s) 337, 364, 425, 431, 496, 505, 908, 1042, 1264
NciI CCSGG 2 cut(s) 541, 1725
NdeII GATC 3 cut(s) 719, 1393, 1683
NlaIII CATG 7 cut(s) 163, 536, 754, 1086, 1169, 1452, 1690
NlaIV GGNNCC 2 cut(s) 330, 1381
NmuCI GTSAC 2 cut(s) 143, 1398
NsbI TGCGCA 1 cut(s) 1697
NsiI ATGCAT 1 cut(s) 1167
NspI RCATGY 1 cut(s) 1086
NspV TTCGAA 1 cut(s) 285
PaeR7I CTCGAG 1 cut(s) 494
PciSI GCTCTTC 1 cut(s) 49
PcsI WCGNNNNNNNCGW 1 cut(s) 1570
PctI GAATGC 1 cut(s) 701
PfeI GAWTC 8 cut(s) 234, 272, 484, 503, 1067, 1294, 1532, 1733
PfoI TCCNGGA 1 cut(s) 539
PkrI GCNGC 6 cut(s) 128, 139, 427, 826, 1540, 1543
PleI GAGTC 3 cut(s) 78, 1033, 1296
PmaCI CACGTG 1 cut(s) 815
PmlI CACGTG 1 cut(s) 815
PpsI GAGTC 3 cut(s) 78, 1033, 1296
Ppu21I YACGTR 1 cut(s) 815
PshBI ATTAAT 1 cut(s) 1515
Psp6I CCWGG 1 cut(s) 448
PspCI CACGTG 1 cut(s) 815
PspGI CCWGG 1 cut(s) 448
PspN4I GGNNCC 2 cut(s) 330, 1381
PspXI VCTCGAGB 1 cut(s) 494
PstNI CAGNNNCTG 1 cut(s) 1535
PsuI RGATCY 1 cut(s) 719
RseI CAYNNNNRTG 3 cut(s) 533, 755, 1160
SapI GCTCTTC 1 cut(s) 49
SatI GCNGC 6 cut(s) 127, 138, 426, 825, 1539, 1542
Sau3AI GATC 3 cut(s) 719, 1393, 1683
SchI GAGTC 3 cut(s) 78, 1034, 1297
ScrFI CCNGG 3 cut(s) 450, 541, 1725
SduI GDGCHC 1 cut(s) 712
SfaNI GCATC 3 cut(s) 587, 795, 1159
Sfr274I CTCGAG 1 cut(s) 494
SfuI TTCGAA 1 cut(s) 285
SlaI CTCGAG 1 cut(s) 494
SmiMI CAYNNNNRTG 3 cut(s) 533, 755, 1160
SmlI CTYRAG 3 cut(s) 494, 586, 764
SmoI CTYRAG 3 cut(s) 494, 586, 764
SspMI CTAG 1 cut(s) 461
StyD4I CCNGG 3 cut(s) 448, 539, 1723
TaaI ACNGT 3 cut(s) 966, 1356, 1508
TaiI ACGT 1 cut(s) 817
TaqI TCGA 6 cut(s) 275, 285, 495, 691, 1177, 1736
TauI GCSGC 2 cut(s) 140, 1541
TfiI GAWTC 8 cut(s) 234, 272, 484, 503, 1067, 1294, 1532, 1733
TscAI CASTG 2 cut(s) 1308, 1471
TseFI GTSAC 2 cut(s) 143, 1398
TseI GCWGC 4 cut(s) 126, 425, 824, 1541
Tsp45I GTSAC 2 cut(s) 143, 1398
TspDTI ATGAA 4 cut(s) 165, 471, 521, 773
TspGWI ACGGA 5 cut(s) 46, 236, 1362, 1648, 1665
TspRI CASTG 2 cut(s) 1308, 1471
Vha464I CTTAAG 1 cut(s) 764
VspI ATTAAT 1 cut(s) 1515
XapI RAATTY 3 cut(s) 288, 619, 869
XceI RCATGY 1 cut(s) 1086
XhoI CTCGAG 1 cut(s) 494
XspI CTAG 1 cut(s) 461
Zsp2I ATGCAT 1 cut(s) 1167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.