Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0012094

Physical Location & Seq

Genomic Coordinates Reverse (-)

13630259 .. 13634888

Gene Structure 4630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G013880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1689 bp

ATGGCGGAAGGCGCTTCATTTTTGTTCGGCGGCATTCACTTCAACCGGAGAAAGTTCGCCACTGACTTTTCCCGATTCGAGAATTTGATTCAGGCCAAAAAGAAAGAGATAAACGCTTCGAGCCTTGCACAACCTGAACCAGAAGAAGAGGAGGAGGAGGAGGAAGAGCCAGTAGTAGCAGTTTCTGTGAAGAAGAGGAAGAGGAAGACGGAGGCTTCAGAGTCTGGGGATGGAATCAGTCTTTTTAAGACGTCAAAATCAGCAAAGGCAGCTAAGAAAGATAAAGAGAAGCCTGTGAATGAACGCGCCAAGCAGAAGAAGAAATTAAATAGACAACTTGAGCGGGATTCAATACTCCGAAAGAAGCATAATGTGCATGTGTCGGGGAATAATATCCCATCCCCTCTTGAGAATTTTTCGGAGTTAAGCTCAAGATTTGGATGTGAAGAGTATTTACTTCGTAATTTGGCCGAGCTTGGATTTGAAGAGCCAACACCAATCCAAAGGCAGGCTATTCCAGTCCTCTTATCTGGCCGGGAATGCTTTGCTTGTGCTCCAACTGGGTCTGGAAAAACCCTTGCTTTTGTGGTTCCCATGCTTATGAAACTTAAGCAAGCTTCTAAGGGTGGCATTCGAGCTGTGATTCTTTGTCCTACACGTGAATTAGCTGCTCAGACAACCAGAGAGTGCAAAAAGTTGGCAAAAGGAAATAAATTTTACATTAAGTTGATGACTAAAGAGCTTGTTAGAAGTGCTGATTTTTCAAAAGACCCTTGTGATGTACTCATATCTACTCCACAACGGCTACGGATGGCTATTCGAAAAAAGAAGCTTAATTTAAGCAGGGTGGAATATCTTGTCTTGGATGAGTCTGATAAGCTCTTTGAGCTTGGCCTGTTAAAGCAGATTGATTCTGTGGTGAAAGCATGCTCAAACCCTTCAATAGTTCGCTCTTTGTTTAGTGCTACTTTACCTGATTTTGTTGAGGAGCTTGCACGTACTATAATGCATGATGCTGTTCGAGTTATCATTGGCAGGAAAAATACTGCTTCTGAGACTATTAAGCAAAAATTGGTATATGCTGGAAGTGAACAAGGGAAATTTCTAGCACTTCGACAGAGCTTTACAGAGAGTCTAAATCCACCAGTGTTGATCTTTGTACAAAGCAAAGAGCGAGCGAAGGAACTCTATGGAGAGCTGTTATGTGAGAACATAAGAGTTGGTGCGATCCATTCTGATATGTCGCAAGCAGAGCGAGAAAATGCTGTTGACGACTTCAGATCTGGAAAAACATGGGTTTTGATTGCCACTGATGTTATTGCCCGGGGTATGGATTTCAAAGGCATCAACTGTGTTATTAATTATGATTTTCCAGATTCTTCGGCTGCCTACATTCACCGGATTGGTCGTTGTGGAAGAGCGGGAAGGAGTGGAGAAGCTATTACTTTCTACACAGATGAAGATATTCCATTTTTGCGGAATATAGCTAATGTTATGGCATCATCAGGTTGTGAGGTTCCATCTTGGATCATGGTCTTGCCCAAAAAGAAGTGGAGAAAGCACAGACCTGGAAGAGGAGGATCGGTATTAGCCGGACCGAAAGATGAAGTAAAAAAGAAGTGGACAAAGAAGAAGGCAAAAAAAACCAAGACAAACATAGATGATGAACCAAAAGATGAGCAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

562

Amino Acids

63.1

Weight (kDa)

9.47

Isoelectric Point (pI)

49.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	165 - 330	5.7e-39	DEAD/DEAH box helicase
ResIII	PF04851	168 - 315	5.9e-10	Type III restriction enzyme, res subunit
Helicase_C	PF00271	367 - 475	2.2e-32	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09720 AT3G09720
fragaria_vesca	FvH4_6g15470
malus_domestica	MD04G1103000.v1.1 MD12G1123200.v1.1
prunus_persica	Prupe.6G240000_v2.0.a1 Prupe.6G240000_v2.0.a1
pyrus_communis	pycom04g09810 pycom12g12190
rosa_chinensis	RchiOBHm_Chr3g0468951
rosa_laevigata	RLG00000024397
rosa_multiflora	Rmu_co8069278.1_g000001 Rmu_co8291353.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412430
rosa_rugosa	Rorug03G0097800
rosa_samantha	Rh3AG147400 Rh3BG170000 Rh3DG205000
rosa_wichuraiana	Rw3G013880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	254
AccBSI	CCGCTC	2 cut(s)	343, 1421
AccII	CGCG	1 cut(s)	306
AciI	CCGC	5 cut(s)	5, 30, 343, 1421, 1477
AclWI	GGATC	3 cut(s)	1222, 1535, 1588
AcoI	YGGCCR	2 cut(s)	468, 532
AcsI	RAATTY	4 cut(s)	82, 412, 713, 1100
AcuI	CTGAAG	2 cut(s)	201, 1261
AcvI	CACGTG	1 cut(s)	659
AcyI	GRCGYC	1 cut(s)	251
AfaI	GTAC	3 cut(s)	783, 1000, 1161
AfiI	CCNNNNNNNGG	3 cut(s)	508, 1330, 1574
AflII	CTTAAG	1 cut(s)	608
AflIII	ACRYGT	1 cut(s)	656
AgsI	TTSAA	6 cut(s)	43, 351, 485, 765, 942, 1339
AjnI	CCWGG	1 cut(s)	1567
Alw21I	GWGCWC	1 cut(s)	556
Alw26I	GTCTC	1 cut(s)	1049
AlwI	GGATC	3 cut(s)	1222, 1535, 1588
AlwNI	CAGNNNCTG	2 cut(s)	185, 224
Ama87I	CYCGRG	1 cut(s)	1323
AoxI	GGCC	4 cut(s)	93, 468, 532, 892
ApeKI	GCWGC	3 cut(s)	269, 668, 1385
ApoI	RAATTY	4 cut(s)	82, 412, 713, 1100
AseI	ATTAAT	1 cut(s)	1359
Asp700I	GAANNNNTTC	1 cut(s)	1464
AspLEI	GCGC	2 cut(s)	14, 308
AspS9I	GGNCC	1 cut(s)	1595
AsuC2I	CCSGG	3 cut(s)	536, 1324, 1325
AsuHPI	GGTGA	2 cut(s)	931, 1388
AsuII	TTCGAA	1 cut(s)	820
AvaI	CYCGRG	1 cut(s)	1323
AvaII	GGWCC	1 cut(s)	1595
BarI	GAAGNNNNNNTAC	2 cut(s)	438, 470
BbrPI	CACGTG	1 cut(s)	659
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	556
BbvI	GCAGC	3 cut(s)	281, 655, 1372
BccI	CCATC	4 cut(s)	224, 406, 805, 1528
BceAI	ACGGC	1 cut(s)	818
BciT130I	CCWGG	1 cut(s)	1569
BcnI	CCSGG	3 cut(s)	536, 1324, 1325
BcoDI	GTCTC	1 cut(s)	1049
BfaI	CTAG	1 cut(s)	1106
BfoI	RGCGCY	1 cut(s)	15
BfrI	CTTAAG	1 cut(s)	608
BglII	AGATCT	1 cut(s)	1280
BisI	GCNGC	4 cut(s)	31, 270, 669, 1386
BlsI	GCNGC	4 cut(s)	32, 271, 670, 1387
Bme1390I	CCNGG	4 cut(s)	536, 1324, 1325, 1569
Bme18I	GGWCC	1 cut(s)	1595
BmeT110I	CYCGRG	1 cut(s)	1323
BmgT120I	GGNCC	1 cut(s)	1595
BmiI	GGNNCC	2 cut(s)	591, 1518
BmrFI	CCNGG	4 cut(s)	536, 1324, 1325, 1569
BmrI	ACTGGG	1 cut(s)	570
BmsI	GCATC	3 cut(s)	1003, 1353, 1508
BmuI	ACTGGG	1 cut(s)	570
BpiI	GAAGAC	1 cut(s)	212
BplI	GAGNNNNNCTC	2 cut(s)	413, 445
Bpu14I	TTCGAA	1 cut(s)	820
BpuEI	CTTGAG	3 cut(s)	359, 415, 428
BpuMI	CCSGG	3 cut(s)	536, 1324, 1325
BsaAI	YACGTR	2 cut(s)	659, 998
BsaHI	GRCGYC	1 cut(s)	251
BsaJI	CCNNGG	2 cut(s)	1323, 1324
BsaWI	WCCGGW	2 cut(s)	45, 1398
BsaXI	ACNNNNNCTCC	2 cut(s)	1569, 1599
Bsc4I	CCNNNNNNNGG	3 cut(s)	508, 1330, 1574
Bse1I	ACTGG	4 cut(s)	170, 518, 565, 1145
BseBI	CCWGG	1 cut(s)	1569
BseDI	CCNNGG	2 cut(s)	1323, 1324
BseGI	GGATG	5 cut(s)	235, 398, 446, 816, 871
BseLI	CCNNNNNNNGG	3 cut(s)	508, 1330, 1574
BseMII	CTCAG	2 cut(s)	686, 1044
BseNI	ACTGG	4 cut(s)	170, 518, 565, 1145
BseRI	GAGGAG	6 cut(s)	164, 167, 170, 173, 1001, 1590
BseXI	GCAGC	3 cut(s)	281, 655, 1372
Bsh1236I	CGCG	1 cut(s)	306
BshFI	GGCC	4 cut(s)	95, 470, 534, 894
BsiHKAI	GWGCWC	1 cut(s)	556
BsiHKCI	CYCGRG	1 cut(s)	1323
BsiSI	CCGG	5 cut(s)	46, 535, 1324, 1399, 1593
BslI	CCNNNNNNNGG	3 cut(s)	508, 1330, 1574
BsmAI	GTCTC	1 cut(s)	1049
BsmI	GAATGC	3 cut(s)	33, 545, 630
BsnI	GGCC	4 cut(s)	95, 470, 534, 894
BsoBI	CYCGRG	1 cut(s)	1323
Bsp119I	TTCGAA	1 cut(s)	820
Bsp1286I	GDGCHC	1 cut(s)	556
Bsp1407I	TGTACA	1 cut(s)	1159
Bsp143I	GATC	5 cut(s)	1152, 1227, 1280, 1527, 1580
BspACI	CCGC	5 cut(s)	5, 30, 343, 1421, 1477
BspANI	GGCC	4 cut(s)	95, 470, 534, 894
BspCNI	CTCAG	2 cut(s)	685, 1045
BspFNI	CGCG	1 cut(s)	306
BspLI	GGNNCC	2 cut(s)	591, 1518
BspPI	GGATC	3 cut(s)	1222, 1535, 1588
BspQI	GCTCTTC	3 cut(s)	159, 480, 1411
BspT104I	TTCGAA	1 cut(s)	820
BspTI	CTTAAG	1 cut(s)	608
BsrBI	CCGCTC	2 cut(s)	343, 1421
BsrGI	TGTACA	1 cut(s)	1159
BsrI	ACTGG	4 cut(s)	170, 518, 565, 1145
BssECI	CCNNGG	2 cut(s)	1323, 1324
BssMI	GATC	5 cut(s)	1152, 1227, 1280, 1527, 1580
BssNI	GRCGYC	1 cut(s)	251
Bst2UI	CCWGG	1 cut(s)	1569
Bst4CI	ACNGT	1 cut(s)	1352
Bst6I	CTCTTC	8 cut(s)	141, 159, 188, 194, 441, 480, 1411, 1567
BstACI	GRCGYC	1 cut(s)	251
BstAFI	CTTAAG	1 cut(s)	608
BstAPI	GCANNNNNTGC	1 cut(s)	373
BstAUI	TGTACA	1 cut(s)	1159
BstBAI	YACGTR	2 cut(s)	659, 998
BstBI	TTCGAA	1 cut(s)	820
BstC8I	GCNNGC	6 cut(s)	510, 615, 928, 993, 1176, 1248
BstDEI	CTNAG	4 cut(s)	273, 621, 672, 1053
BstENI	CCTNNNNNAGG	1 cut(s)	1572
BstF5I	GGATG	5 cut(s)	235, 398, 446, 816, 871
BstFNI	CGCG	1 cut(s)	306
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	2 cut(s)	14, 308
BstKTI	GATC	5 cut(s)	1155, 1230, 1283, 1530, 1583
BstMAI	GTCTC	1 cut(s)	1049
BstMBI	GATC	5 cut(s)	1152, 1227, 1280, 1527, 1580
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 269, 373, 540, 886, 1252
BstNI	CCWGG	1 cut(s)	1569
BstNSI	RCATGY	2 cut(s)	380, 930
BstSCI	CCNGG	4 cut(s)	534, 1322, 1323, 1567
BstUI	CGCG	1 cut(s)	306
BstV1I	GCAGC	3 cut(s)	281, 655, 1372
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	1280
BstYI	RGATCY	1 cut(s)	1280
BsuRI	GGCC	4 cut(s)	95, 470, 534, 894
BtsCI	GGATG	5 cut(s)	235, 398, 446, 816, 871
BtsIMutI	CAGTG	3 cut(s)	60, 1152, 1308
Cac8I	GCNNGC	6 cut(s)	510, 615, 928, 993, 1176, 1248
CaiI	CAGNNNCTG	2 cut(s)	185, 224
CfoI	GCGC	2 cut(s)	14, 308
Cfr13I	GGNCC	1 cut(s)	1595
Cfr9I	CCCGGG	1 cut(s)	1323
CpoI	CGGWCCG	1 cut(s)	1595
Csp6I	GTAC	3 cut(s)	782, 999, 1160
CspCI	CAANNNNNGTGG	2 cut(s)	1131, 1166
CspI	CGGWCCG	1 cut(s)	1595
CviAII	CATG	6 cut(s)	377, 595, 927, 1010, 1293, 1531
CviQI	GTAC	3 cut(s)	782, 999, 1160
DdeI	CTNAG	4 cut(s)	273, 621, 672, 1053
DpnI	GATC	5 cut(s)	1154, 1229, 1282, 1529, 1582
DpnII	GATC	5 cut(s)	1152, 1227, 1280, 1527, 1580
EaeI	YGGCCR	2 cut(s)	468, 532
Eam1104I	CTCTTC	8 cut(s)	141, 159, 188, 194, 441, 480, 1411, 1567
EarI	CTCTTC	8 cut(s)	141, 159, 188, 194, 441, 480, 1411, 1567
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	1595
Eco57I	CTGAAG	2 cut(s)	201, 1261
Eco72I	CACGTG	1 cut(s)	659
Eco88I	CYCGRG	1 cut(s)	1323
EcoNI	CCTNNNNNAGG	1 cut(s)	1572
EcoRII	CCWGG	1 cut(s)	1567
EcoT22I	ATGCAT	1 cut(s)	1011
FaeI	CATG	6 cut(s)	380, 598, 930, 1013, 1296, 1534
FatI	CATG	6 cut(s)	376, 594, 926, 1009, 1292, 1530
FauI	CCCGC	2 cut(s)	336, 1414
Fnu4HI	GCNGC	4 cut(s)	31, 270, 669, 1386
FokI	GGATG	5 cut(s)	242, 385, 453, 823, 878
Fsp4HI	GCNGC	4 cut(s)	31, 270, 669, 1386
FspBI	CTAG	1 cut(s)	1106
GlaI	GCGC	2 cut(s)	13, 307
GluI	GCNGC	4 cut(s)	31, 270, 669, 1386
HaeII	RGCGCY	1 cut(s)	15
HaeIII	GGCC	4 cut(s)	95, 470, 534, 894
HapII	CCGG	5 cut(s)	46, 535, 1324, 1399, 1593
HhaI	GCGC	2 cut(s)	14, 308
Hin1I	GRCGYC	1 cut(s)	251
Hin1II	CATG	6 cut(s)	380, 598, 930, 1013, 1296, 1534
Hin6I	GCGC	2 cut(s)	12, 306
HinP1I	GCGC	2 cut(s)	12, 306
HincII	GTYRAC	1 cut(s)	1270
HindII	GTYRAC	1 cut(s)	1270
HindIII	AAGCTT	2 cut(s)	615, 830
HpaII	CCGG	5 cut(s)	46, 535, 1324, 1399, 1593
HphI	GGTGA	2 cut(s)	931, 1388
Hpy166II	GTNNAC	3 cut(s)	1091, 1270, 1623
Hpy188I	TCNGA	8 cut(s)	220, 359, 421, 675, 874, 1054, 1237, 1280
Hpy188III	TCNNGA	7 cut(s)	72, 79, 407, 432, 567, 1284, 1373
Hpy8I	GTNNAC	3 cut(s)	1091, 1270, 1623
HpyAV	CCTTC	4 cut(s)	948, 1174, 1419, 1627
HpyCH4III	ACNGT	1 cut(s)	1352
HpyCH4IV	ACGT	3 cut(s)	251, 658, 997
HpyCH4V	TGCA	5 cut(s)	128, 376, 690, 995, 1009
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 269, 373, 540, 886, 1252
HpyF3I	CTNAG	4 cut(s)	273, 621, 672, 1053
HpySE526I	ACGT	3 cut(s)	251, 658, 997
Hsp92I	GRCGYC	1 cut(s)	251
Hsp92II	CATG	6 cut(s)	380, 598, 930, 1013, 1296, 1534
HspAI	GCGC	2 cut(s)	12, 306
Kzo9I	GATC	5 cut(s)	1152, 1227, 1280, 1527, 1580
LguI	GCTCTTC	3 cut(s)	159, 480, 1411
LmnI	GCTCC	2 cut(s)	559, 988
Lsp1109I	GCAGC	3 cut(s)	281, 655, 1372
LweI	GCATC	3 cut(s)	1003, 1353, 1508
MaeI	CTAG	1 cut(s)	1106
MaeII	ACGT	3 cut(s)	251, 658, 997
MalI	GATC	5 cut(s)	1154, 1229, 1282, 1529, 1582
MbiI	CCGCTC	2 cut(s)	343, 1421
MboI	GATC	5 cut(s)	1152, 1227, 1280, 1527, 1580
MflI	RGATCY	1 cut(s)	1280
MhlI	GDGCHC	1 cut(s)	556
MlyI	GAGTC	3 cut(s)	230, 878, 1141
MmeI	TCCRAC	1 cut(s)	581
Mph1103I	ATGCAT	1 cut(s)	1011
MroXI	GAANNNNTTC	1 cut(s)	1464
MslI	CAYNNNNRTG	1 cut(s)	599
MspCI	CTTAAG	1 cut(s)	608
MspI	CCGG	5 cut(s)	46, 535, 1324, 1399, 1593
MspR9I	CCNGG	4 cut(s)	536, 1324, 1325, 1569
Mva1269I	GAATGC	3 cut(s)	33, 545, 630
MvaI	CCWGG	1 cut(s)	1569
MvnI	CGCG	1 cut(s)	306
MwoI	GCNNNNNNNGC	6 cut(s)	11, 269, 373, 540, 886, 1252
NciI	CCSGG	3 cut(s)	536, 1324, 1325
NdeII	GATC	5 cut(s)	1152, 1227, 1280, 1527, 1580
NlaIII	CATG	6 cut(s)	380, 598, 930, 1013, 1296, 1534
NlaIV	GGNNCC	2 cut(s)	591, 1518
NmeAIII	GCCGAG	1 cut(s)	496
NsiI	ATGCAT	1 cut(s)	1011
NspI	RCATGY	2 cut(s)	380, 930
NspV	TTCGAA	1 cut(s)	820
PaeI	GCATGC	1 cut(s)	930
PciSI	GCTCTTC	3 cut(s)	159, 480, 1411
PctI	GAATGC	3 cut(s)	33, 545, 630
PdmI	GAANNNNTTC	1 cut(s)	1464
PfeI	GAWTC	7 cut(s)	75, 88, 234, 347, 643, 911, 1376
PkrI	GCNGC	4 cut(s)	32, 271, 670, 1387
PleI	GAGTC	3 cut(s)	229, 877, 1140
PmaCI	CACGTG	1 cut(s)	659
PmlI	CACGTG	1 cut(s)	659
PpsI	GAGTC	3 cut(s)	229, 877, 1140
Ppu21I	YACGTR	2 cut(s)	659, 998
PshBI	ATTAAT	1 cut(s)	1359
Psp6I	CCWGG	1 cut(s)	1567
PspCI	CACGTG	1 cut(s)	659
PspGI	CCWGG	1 cut(s)	1567
PspN4I	GGNNCC	2 cut(s)	591, 1518
PspPI	GGNCC	1 cut(s)	1595
PstNI	CAGNNNCTG	2 cut(s)	185, 224
PsuI	RGATCY	1 cut(s)	1280
RsaI	GTAC	3 cut(s)	783, 1000, 1161
RsaNI	GTAC	3 cut(s)	782, 999, 1160
RseI	CAYNNNNRTG	1 cut(s)	599
Rsr2I	CGGWCCG	1 cut(s)	1595
RsrII	CGGWCCG	1 cut(s)	1595
SapI	GCTCTTC	3 cut(s)	159, 480, 1411
SatI	GCNGC	4 cut(s)	31, 270, 669, 1386
Sau3AI	GATC	5 cut(s)	1152, 1227, 1280, 1527, 1580
Sau96I	GGNCC	1 cut(s)	1595
SchI	GAGTC	3 cut(s)	230, 878, 1141
ScrFI	CCNGG	4 cut(s)	536, 1324, 1325, 1569
SduI	GDGCHC	1 cut(s)	556
SfaNI	GCATC	3 cut(s)	1003, 1353, 1508
SfuI	TTCGAA	1 cut(s)	820
SinI	GGWCC	1 cut(s)	1595
SmaI	CCCGGG	1 cut(s)	1325
SmiMI	CAYNNNNRTG	1 cut(s)	599
SmlI	CTYRAG	4 cut(s)	338, 407, 430, 608
SmoI	CTYRAG	4 cut(s)	338, 407, 430, 608
SphI	GCATGC	1 cut(s)	930
SsiI	CCGC	5 cut(s)	5, 30, 343, 1421, 1477
SspMI	CTAG	1 cut(s)	1106
StyD4I	CCNGG	4 cut(s)	534, 1322, 1323, 1567
TaaI	ACNGT	1 cut(s)	1352
TaiI	ACGT	3 cut(s)	254, 661, 1000
TaqI	TCGA	6 cut(s)	78, 119, 634, 820, 1021, 1114
TaqII	GACCGA	1 cut(s)	1612
TatI	WGTACW	2 cut(s)	781, 1159
TauI	GCSGC	1 cut(s)	33
TfiI	GAWTC	7 cut(s)	75, 88, 234, 347, 643, 911, 1376
TscAI	CASTG	3 cut(s)	67, 1152, 1315
TseI	GCWGC	3 cut(s)	269, 668, 1385
TspDTI	ATGAA	6 cut(s)	6, 315, 617, 1473, 1620, 1680
TspGWI	ACGGA	2 cut(s)	224, 823
TspMI	CCCGGG	1 cut(s)	1323
TspRI	CASTG	3 cut(s)	67, 1152, 1315
Vha464I	CTTAAG	1 cut(s)	608
VpaK11BI	GGWCC	1 cut(s)	1595
VspI	ATTAAT	1 cut(s)	1359
XagI	CCTNNNNNAGG	1 cut(s)	1572
XapI	RAATTY	4 cut(s)	82, 412, 713, 1100
XceI	RCATGY	2 cut(s)	380, 930
XmaI	CCCGGG	1 cut(s)	1323
XmnI	GAANNNNTTC	1 cut(s)	1464
XspI	CTAG	1 cut(s)	1106
ZraI	GACGTC	1 cut(s)	252
Zsp2I	ATGCAT	1 cut(s)	1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.