Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8291353.1

Orthogroup ID

OG0012094

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 530

Gene Structure 529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8291353.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 295 bp

atgaaaaatgtgtttacgattgttttcagatttggatgtgaagagtatttacttcgtaatttggccgagcttggatttgaagagccaacaccaatccaaaggcaggctattccagtcctcttatctggccgggaatgctttgcttgtgctccaactgggtctggaaaaacccttgcttttgtggttcccatgcttatgaaacttaagcaagcgtctaagggtggcattcgagctgtgattctttgtcctacacgtgaattagctgctcagacaaccagagagtgcaaaaagttgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

98

Amino Acids

10.85

Weight (kDa)

9.36

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09720 AT3G09720
fragaria_vesca	FvH4_6g15470
malus_domestica	MD04G1103000.v1.1 MD12G1123200.v1.1
prunus_persica	Prupe.6G240000_v2.0.a1 Prupe.6G240000_v2.0.a1
pyrus_communis	pycom04g09810 pycom12g12190
rosa_chinensis	RchiOBHm_Chr3g0468951
rosa_laevigata	RLG00000024397
rosa_multiflora	Rmu_co8069278.1_g000001 Rmu_co8291353.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412430
rosa_rugosa	Rorug03G0097800
rosa_samantha	Rh3AG147400 Rh3BG170000 Rh3DG205000
rosa_wichuraiana	Rw3G013880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	63, 127
AcvI	CACGTG	1 cut(s)	254
AfiI	CCNNNNNNNGG	1 cut(s)	103
AflII	CTTAAG	1 cut(s)	203
AflIII	ACRYGT	1 cut(s)	251
AgsI	TTSAA	1 cut(s)	80
AluBI	AGCT	3 cut(s)	70, 233, 263
AluI	AGCT	3 cut(s)	70, 233, 263
Alw21I	GWGCWC	1 cut(s)	151
AoxI	GGCC	2 cut(s)	63, 127
ApeKI	GCWGC	1 cut(s)	263
AsuC2I	CCSGG	1 cut(s)	131
BarI	GAAGNNNNNNTAC	2 cut(s)	33, 65
BbrPI	CACGTG	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	250
BcnI	CCSGG	1 cut(s)	131
BfrI	CTTAAG	1 cut(s)	203
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
Bme1390I	CCNGG	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	1 cut(s)	131
BmrI	ACTGGG	1 cut(s)	165
BmuI	ACTGGG	1 cut(s)	165
BpuMI	CCSGG	1 cut(s)	131
BsaAI	YACGTR	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	2 cut(s)	113, 160
BseGI	GGATG	1 cut(s)	41
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	2 cut(s)	113, 160
BseXI	GCAGC	1 cut(s)	250
BshFI	GGCC	2 cut(s)	65, 129
BsiHKAI	GWGCWC	1 cut(s)	151
BsiSI	CCGG	1 cut(s)	130
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmI	GAATGC	2 cut(s)	140, 225
BsnI	GGCC	2 cut(s)	65, 129
Bsp1286I	GDGCHC	1 cut(s)	151
BspANI	GGCC	2 cut(s)	65, 129
BspCNI	CTCAG	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	186
BspQI	GCTCTTC	1 cut(s)	75
BspTI	CTTAAG	1 cut(s)	203
BsrI	ACTGG	2 cut(s)	113, 160
Bst6I	CTCTTC	2 cut(s)	36, 75
BstAFI	CTTAAG	1 cut(s)	203
BstBAI	YACGTR	1 cut(s)	254
BstC8I	GCNNGC	2 cut(s)	105, 210
BstDEI	CTNAG	2 cut(s)	216, 267
BstF5I	GGATG	1 cut(s)	41
BstMWI	GCNNNNNNNGC	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	250
BsuRI	GGCC	2 cut(s)	65, 129
BtsCI	GGATG	1 cut(s)	41
Cac8I	GCNNGC	2 cut(s)	105, 210
CseI	GACGC	1 cut(s)	201
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	7 cut(s)	65, 70, 85, 107, 129, 233, 263
CviKI_1	RGCY	7 cut(s)	65, 70, 85, 107, 129, 233, 263
DdeI	CTNAG	2 cut(s)	216, 267
EaeI	YGGCCR	2 cut(s)	63, 127
Eam1104I	CTCTTC	2 cut(s)	36, 75
EarI	CTCTTC	2 cut(s)	36, 75
Eco72I	CACGTG	1 cut(s)	254
FaeI	CATG	1 cut(s)	193
FaiI	YATR	2 cut(s)	191, 197
FatI	CATG	1 cut(s)	189
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	264
GluI	GCNGC	1 cut(s)	264
HaeIII	GGCC	2 cut(s)	65, 129
HapII	CCGG	1 cut(s)	130
HgaI	GACGC	1 cut(s)	201
Hin1II	CATG	1 cut(s)	193
HinfI	GANTC	1 cut(s)	238
HpaII	CCGG	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	2 cut(s)	29, 270
Hpy188III	TCNNGA	1 cut(s)	162
Hpy8I	GTNNAC	1 cut(s)	15
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	1 cut(s)	285
HpyF10VI	GCNNNNNNNGC	1 cut(s)	135
HpyF3I	CTNAG	2 cut(s)	216, 267
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	1 cut(s)	193
LguI	GCTCTTC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	7 cut(s)	89, 111, 126, 141, 143, 147, 289
Lsp1109I	GCAGC	1 cut(s)	250
MaeII	ACGT	1 cut(s)	253
MboII	GAAGA	2 cut(s)	53, 92
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	2 cut(s)	58, 257
MmeI	TCCRAC	1 cut(s)	176
MnlI	CCTC	1 cut(s)	128
MseI	TTAA	1 cut(s)	204
MslI	CAYNNNNRTG	1 cut(s)	194
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	1 cut(s)	130
MspR9I	CCNGG	1 cut(s)	131
Mva1269I	GAATGC	2 cut(s)	140, 225
MwoI	GCNNNNNNNGC	1 cut(s)	135
NciI	CCSGG	1 cut(s)	131
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	1 cut(s)	186
NmeAIII	GCCGAG	1 cut(s)	91
PciSI	GCTCTTC	1 cut(s)	75
PctI	GAATGC	2 cut(s)	140, 225
PfeI	GAWTC	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	265
PmaCI	CACGTG	1 cut(s)	254
PmlI	CACGTG	1 cut(s)	254
Ppu21I	YACGTR	1 cut(s)	254
PspCI	CACGTG	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	186
RseI	CAYNNNNRTG	1 cut(s)	194
SapI	GCTCTTC	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	1 cut(s)	264
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	151
SetI	ASST	4 cut(s)	72, 235, 256, 265
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	2 cut(s)	58, 257
StyD4I	CCNGG	1 cut(s)	129
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	1 cut(s)	229
TasI	AATT	2 cut(s)	58, 257
TfiI	GAWTC	1 cut(s)	238
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseI	GCWGC	1 cut(s)	263
TspDTI	ATGAA	2 cut(s)	17, 212
Vha464I	CTTAAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.