Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8069278.1

Orthogroup ID

OG0012094

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 575

Gene Structure 575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8069278.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 353 bp

gaagattataaaccagaagatgaggaagacgatgtaggtgcaaatgcggctgagaataaacctttctttgcttcatctgacggcacgtcgtttcatgcgaattcgttcctggagctcaatttgtcgagacccctgcttcgggcttgcgagaaattgggctatgttaagcccacgccaattcaggcagcttgcattccactggccttgtctgggagggatatatgcggaagtgccattactggttccgggaagacggctgcttttgcgttacctacactggagagattattgtttcgccccaagcgggtgcctgccataagggtccttgttctgactcctgccagagaactggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

118

Amino Acids

12.7

Weight (kDa)

5.85

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09720 AT3G09720
fragaria_vesca	FvH4_6g15470
malus_domestica	MD04G1103000.v1.1 MD12G1123200.v1.1
prunus_persica	Prupe.6G240000_v2.0.a1 Prupe.6G240000_v2.0.a1
pyrus_communis	pycom04g09810 pycom12g12190
rosa_chinensis	RchiOBHm_Chr3g0468951
rosa_laevigata	RLG00000024397
rosa_multiflora	Rmu_co8069278.1_g000001 Rmu_co8291353.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412430
rosa_rugosa	Rorug03G0097800
rosa_samantha	Rh3AG147400 Rh3BG170000 Rh3DG205000
rosa_wichuraiana	Rw3G013880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	9
AccB1I	GGYRCC	1 cut(s)	307
AciI	CCGC	3 cut(s)	47, 225, 304
AcsI	RAATTY	1 cut(s)	100
AfiI	CCNNNNNNNGG	4 cut(s)	138, 139, 210, 304
AhdI	GACNNNNNGTC	1 cut(s)	85
AjiI	CACGTC	1 cut(s)	87
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	2 cut(s)	115, 188
AluI	AGCT	2 cut(s)	115, 188
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	1 cut(s)	121
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	2 cut(s)	185, 257
ApoI	RAATTY	1 cut(s)	100
ArsI	GACNNNNNNTTYG	2 cut(s)	120, 152
Asp700I	GAANNNNTTC	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	322
AsuC2I	CCSGG	1 cut(s)	247
AvaII	GGWCC	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	307
BanII	GRGCYC	1 cut(s)	117
BarI	GAAGNNNNNNTAC	2 cut(s)	220, 252
BbsI	GAAGAC	2 cut(s)	33, 257
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	2 cut(s)	197, 244
BceAI	ACGGC	2 cut(s)	97, 270
BcgI	CGANNNNNNTGC	4 cut(s)	20, 54, 115, 149
BciT130I	CCWGG	1 cut(s)	110
BcnI	CCSGG	1 cut(s)	247
BcoDI	GTCTC	1 cut(s)	121
BisI	GCNGC	3 cut(s)	48, 186, 258
BlsI	GCNGC	3 cut(s)	49, 187, 259
Bme1390I	CCNGG	2 cut(s)	110, 247
Bme18I	GGWCC	1 cut(s)	322
BmeRI	GACNNNNNGTC	1 cut(s)	85
BmgBI	CACGTC	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	3 cut(s)	244, 309, 323
BmrFI	CCNGG	2 cut(s)	110, 247
BpiI	GAAGAC	2 cut(s)	33, 257
BpmI	CTGGAG	2 cut(s)	131, 299
BpuMI	CCSGG	1 cut(s)	247
BsaI	GGTCTC	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	4 cut(s)	138, 139, 210, 304
Bse1I	ACTGG	3 cut(s)	204, 244, 282
BseBI	CCWGG	1 cut(s)	110
BseLI	CCNNNNNNNGG	4 cut(s)	138, 139, 210, 304
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	3 cut(s)	204, 244, 282
BseXI	GCAGC	2 cut(s)	197, 244
BshFI	GGCC	1 cut(s)	203
BshNI	GGYRCC	1 cut(s)	307
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	246
BslI	CCNNNNNNNGG	4 cut(s)	138, 139, 210, 304
BsmAI	GTCTC	1 cut(s)	121
BsmI	GAATGC	1 cut(s)	192
BsnI	GGCC	1 cut(s)	203
Bso31I	GGTCTC	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	117
BspACI	CCGC	3 cut(s)	47, 225, 304
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	43
BspLI	GGNNCC	3 cut(s)	244, 309, 323
BspT107I	GGYRCC	1 cut(s)	307
BspTNI	GGTCTC	1 cut(s)	121
BsrI	ACTGG	3 cut(s)	204, 244, 282
Bst2UI	CCWGG	1 cut(s)	110
BstC8I	GCNNGC	3 cut(s)	145, 190, 312
BstDEI	CTNAG	1 cut(s)	51
BstMAI	GTCTC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 263
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	2 cut(s)	108, 245
BstV1I	GCAGC	2 cut(s)	197, 244
BstV2I	GAAGAC	2 cut(s)	33, 257
BstXI	CCANNNNNNTGG	1 cut(s)	349
BsuRI	GGCC	1 cut(s)	203
BtrI	CACGTC	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	197, 275
Cac8I	GCNNGC	3 cut(s)	145, 190, 312
Cfr13I	GGNCC	1 cut(s)	322
CspCI	CAANNNNNGTGG	2 cut(s)	186, 221
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	8 cut(s)	50, 115, 143, 159, 169, 188, 203, 257
CviKI_1	RGCY	8 cut(s)	50, 115, 143, 159, 169, 188, 203, 257
DdeI	CTNAG	1 cut(s)	51
DriI	GACNNNNNGTC	1 cut(s)	85
Eam1105I	GACNNNNNGTC	1 cut(s)	85
Ecl136II	GAGCTC	1 cut(s)	115
Eco24I	GRGCYC	1 cut(s)	117
Eco31I	GGTCTC	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	322
Eco53kI	GAGCTC	1 cut(s)	115
EcoICRI	GAGCTC	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	322
EcoRI	GAATTC	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	117
FaeI	CATG	1 cut(s)	98
FaiI	YATR	6 cut(s)	9, 96, 162, 221, 223, 317
FatI	CATG	1 cut(s)	94
FauI	CCCGC	1 cut(s)	297
Fnu4HI	GCNGC	3 cut(s)	48, 186, 258
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	3 cut(s)	48, 186, 258
GluI	GCNGC	3 cut(s)	48, 186, 258
GsuI	CTGGAG	2 cut(s)	131, 299
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	1 cut(s)	246
Hin1II	CATG	1 cut(s)	98
HinfI	GANTC	1 cut(s)	334
HpaII	CCGG	1 cut(s)	246
Hpy188I	TCNGA	2 cut(s)	79, 333
Hpy188III	TCNNGA	1 cut(s)	126
Hpy99I	CGWCG	1 cut(s)	91
HpyCH4IV	ACGT	1 cut(s)	86
HpyCH4V	TGCA	2 cut(s)	41, 192
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 263
HpyF3I	CTNAG	1 cut(s)	51
HpySE526I	ACGT	1 cut(s)	86
Hsp92II	CATG	1 cut(s)	98
LmnI	GCTCC	1 cut(s)	112
Lsp1109I	GCAGC	2 cut(s)	197, 244
MaeII	ACGT	1 cut(s)	86
MaeIII	GTNAC	1 cut(s)	267
MboII	GAAGA	4 cut(s)	14, 29, 38, 262
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	4 cut(s)	100, 118, 152, 177
MlyI	GAGTC	1 cut(s)	328
MnlI	CCTC	2 cut(s)	16, 207
MroXI	GAANNNNTTC	1 cut(s)	104
MseI	TTAA	1 cut(s)	165
MspI	CCGG	1 cut(s)	246
MspR9I	CCNGG	2 cut(s)	110, 247
Mva1269I	GAATGC	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	2 cut(s)	47, 263
NciI	CCSGG	1 cut(s)	247
NlaIII	CATG	1 cut(s)	98
NlaIV	GGNNCC	3 cut(s)	244, 309, 323
PcsI	WCGNNNNNNNCGW	1 cut(s)	95
PctI	GAATGC	1 cut(s)	192
PdmI	GAANNNNTTC	1 cut(s)	104
PfoI	TCCNGGA	2 cut(s)	108, 245
PkrI	GCNGC	3 cut(s)	49, 187, 259
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PpuMI	RGGWCCY	1 cut(s)	322
PsiI	TTATAA	1 cut(s)	9
Psp124BI	GAGCTC	1 cut(s)	117
Psp5II	RGGWCCY	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	3 cut(s)	244, 309, 323
PspPI	GGNCC	1 cut(s)	322
PspPPI	RGGWCCY	1 cut(s)	322
SacI	GAGCTC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	3 cut(s)	48, 186, 258
Sau96I	GGNCC	1 cut(s)	322
SchI	GAGTC	1 cut(s)	328
ScrFI	CCNGG	2 cut(s)	110, 247
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	6 cut(s)	40, 64, 89, 117, 190, 274
SinI	GGWCC	1 cut(s)	322
Sse9I	AATT	4 cut(s)	100, 118, 152, 177
SsiI	CCGC	3 cut(s)	47, 225, 304
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	108, 245
TaiI	ACGT	1 cut(s)	89
TaqI	TCGA	1 cut(s)	125
TasI	AATT	4 cut(s)	100, 118, 152, 177
TauI	GCSGC	1 cut(s)	50
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	2 cut(s)	204, 282
TseI	GCWGC	2 cut(s)	185, 257
TspDTI	ATGAA	2 cut(s)	63, 83
TspRI	CASTG	2 cut(s)	204, 282
VpaK11BI	GGWCC	1 cut(s)	322
XapI	RAATTY	1 cut(s)	100
XmnI	GAANNNNTTC	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.