Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0012094

Physical Location & Seq

Genomic Coordinates Forward (+)

35493251 .. 35496851

Gene Structure 3601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024397

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1686 bp

ATGGCGGAAGACGCTTCATTTTTGTTCGGCGGCATTCACTTCAACCGGAGAAAGTTCGCCACTGACTTTTCCCGATTCGAGGCCAAAAAGAAAGAGATAAACGCTTCGAACCCGGTCGAAGTTGCAGAACCTGAACCAGAAGAAGAGGAGGAGGAGGAGGAAGAGCCACTAGTAGCAGTGTCTGTTAAGAAAAGGAAGAGGAAGACGGAGGCTTCAGATTCTGGGGATGGAATCAGTCTTTTTAAGACGTCTAAATCAGCAAAGGCAGCTAAAAAGGATAAAGAGAAGCCTGCGAATGAACGCGCCAAGCAGAAAAAGAAATTAAATAGACAACTTGAGCGGGATTCAATACTCCGAAAGAAGCATAATGTGCATGTGTCGGGGAATAATATCCCATCCCCTCTTGAGAATTTTTCAGAGTTAAGCTCAAGATTTGGATGTGAAGAGTATTTACTTCGTAATTTGGCCGAACTTGGATTTGAAGAGCCAACACCAATCCAAAGGCAGGCTATTCCAGTCCTCTTATCTGGCCGGGAATGCTTTGCTTGTGCTCCAACTGGGTCTGGGAAAACCCTTGCTTTTGTGGTTCCCATGCTTATGAAACTTAAGCACGCGTCTAAGGGTGGCATTCGAGCTGTGATTCTTTGTCCTACACGTGAATTAGCTGCTCAGACAACCAGAGAGTGCAAAAAGTTGGCAAAAGGAAATAAATTTTACATTAAGTTGATGACTAAAGAGCTTGTTAGAAGTGCTGATTTTTCAAAAGACCCTTGTGATATACTCATATCTACTCCACAACGGCTACGGATGGCTATTCGAAAAAAGAAGCTTAATTTAAGCAGGGTGGAATATCTTGTCTTGGATGAGTCTGATAAGCTCTTTGAGCTTGGCCTGTTAAAGCAGATTGATTCTGTGGTGAAAGCATGCTCAAACCCTTCAATAGTTCGCTCTTTGTTTAGTGCTACTTTACCTGATTTTGTTGAGGAGCTTGCACGTACTATAATGCATGATGCTGTTCGAGTTATCATTGGCAGGAAAAATACTGCTTCTGAGACTATTAAGCAAAAATTGGTATATGCTGGAAGTGAACAGGGGAAATTTCTAGCACTTCGACAGAGCTTTACAGAGTGTCTAAATCCACCAGTGTTGATCTTTGTACAAAGCAAAGAGCGAGCGAAGGAACTCTATGGAGAGCTGTTATGTGAGAACATAAGAGTTGGTGCAATCCATTCTGATATGTCGCAAGCAGAGCGAGAAAATGCTGTTGACGACTTCAGAGCAGGAAAAACATGGGTTTTGATTGCCACTGATGTTATTGCTCGGGGTATGGATTTCAAAGGCATCAACTGTGTTATTAATTATGATTTTCCAGATTCTTTGGCTGCCTACATTCACCGGATTGGTCGCTGTGGAAGAGCGGGAAGGAGTGGAGAAGCTATCACTTTCTACACAGATGAAGATATTCCATTTTTACGGAATATAGCTAATGTTATGGCATCATCAGGTTGTGAGGTTCCATCTTGGATCATGGTCTTGCCCAAAAAGAAGTGGAGAAAGCACAGACCTGGAAGAGGAGGATCGGTATTAGCCGGACCGAAAGATGAAGTAAAAAAGAAGCGGACAAAGAAGAAGGCAAAAAAAACCAAGACAAACATAGATGATGAACCAAAAGATGAGCAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

562

Amino Acids

63.02

Weight (kDa)

9.38

Isoelectric Point (pI)

50.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	164 - 329	2.9e-39	DEAD/DEAH box helicase
ResIII	PF04851	167 - 314	4e-10	Type III restriction enzyme, res subunit
Helicase_C	PF00271	377 - 474	8.7e-32	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09720 AT3G09720
fragaria_vesca	FvH4_6g15470
malus_domestica	MD04G1103000.v1.1 MD12G1123200.v1.1
prunus_persica	Prupe.6G240000_v2.0.a1 Prupe.6G240000_v2.0.a1
pyrus_communis	pycom04g09810 pycom12g12190
rosa_chinensis	RchiOBHm_Chr3g0468951
rosa_laevigata	RLG00000024397
rosa_multiflora	Rmu_co8069278.1_g000001 Rmu_co8291353.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412430
rosa_rugosa	Rorug03G0097800
rosa_samantha	Rh3AG147400 Rh3BG170000 Rh3DG205000
rosa_wichuraiana	Rw3G013880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	251
AccBSI	CCGCTC	2 cut(s)	340, 1418
AccII	CGCG	2 cut(s)	303, 614
AciI	CCGC	5 cut(s)	5, 30, 340, 1418, 1618
AclWI	GGATC	2 cut(s)	1532, 1585
AcoI	YGGCCR	2 cut(s)	465, 529
AcsI	RAATTY	3 cut(s)	409, 710, 1097
AcuI	CTGAAG	2 cut(s)	198, 1258
AcvI	CACGTG	1 cut(s)	656
AcyI	GRCGYC	1 cut(s)	248
AfaI	GTAC	2 cut(s)	997, 1158
AfiI	CCNNNNNNNGG	3 cut(s)	79, 505, 1571
AflII	CTTAAG	1 cut(s)	605
AflIII	ACRYGT	2 cut(s)	612, 653
AgsI	TTSAA	6 cut(s)	43, 348, 482, 762, 939, 1336
AhlI	ACTAGT	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	1564
Alw21I	GWGCWC	1 cut(s)	553
Alw26I	GTCTC	1 cut(s)	1046
AlwI	GGATC	2 cut(s)	1532, 1585
AlwNI	CAGNNNCTG	3 cut(s)	131, 182, 221
Ama87I	CYCGRG	1 cut(s)	1320
AoxI	GGCC	4 cut(s)	81, 465, 529, 889
ApeKI	GCWGC	3 cut(s)	266, 665, 1382
ApoI	RAATTY	3 cut(s)	409, 710, 1097
AseI	ATTAAT	1 cut(s)	1356
Asp700I	GAANNNNTTC	1 cut(s)	1461
AspLEI	GCGC	1 cut(s)	305
AspS9I	GGNCC	1 cut(s)	1592
AsuC2I	CCSGG	2 cut(s)	113, 533
AsuHPI	GGTGA	2 cut(s)	928, 1385
AsuII	TTCGAA	2 cut(s)	107, 817
AvaI	CYCGRG	1 cut(s)	1320
AvaII	GGWCC	1 cut(s)	1592
BarI	GAAGNNNNNNTAC	2 cut(s)	435, 467
BbrPI	CACGTG	1 cut(s)	656
BbsI	GAAGAC	2 cut(s)	15, 209
Bbv12I	GWGCWC	1 cut(s)	553
BbvI	GCAGC	3 cut(s)	278, 652, 1369
BccI	CCATC	4 cut(s)	221, 403, 802, 1525
BceAI	ACGGC	1 cut(s)	815
BciT130I	CCWGG	1 cut(s)	1566
BcnI	CCSGG	2 cut(s)	113, 533
BcoDI	GTCTC	1 cut(s)	1046
BcuI	ACTAGT	1 cut(s)	169
BfaI	CTAG	2 cut(s)	170, 1103
BfrI	CTTAAG	1 cut(s)	605
BisI	GCNGC	4 cut(s)	31, 267, 666, 1383
BlsI	GCNGC	4 cut(s)	32, 268, 667, 1384
Bme1390I	CCNGG	3 cut(s)	113, 533, 1566
Bme18I	GGWCC	1 cut(s)	1592
BmeT110I	CYCGRG	1 cut(s)	1320
BmgT120I	GGNCC	1 cut(s)	1592
BmiI	GGNNCC	2 cut(s)	588, 1515
BmrFI	CCNGG	3 cut(s)	113, 533, 1566
BmrI	ACTGGG	1 cut(s)	567
BmsI	GCATC	3 cut(s)	1000, 1350, 1505
BmuI	ACTGGG	1 cut(s)	567
BpiI	GAAGAC	2 cut(s)	15, 209
BplI	GAGNNNNNCTC	2 cut(s)	410, 442
Bpu14I	TTCGAA	2 cut(s)	107, 817
BpuEI	CTTGAG	3 cut(s)	356, 412, 425
BpuMI	CCSGG	2 cut(s)	113, 533
BsaAI	YACGTR	2 cut(s)	656, 995
BsaHI	GRCGYC	1 cut(s)	248
BsaWI	WCCGGW	2 cut(s)	45, 1395
BsaXI	ACNNNNNCTCC	2 cut(s)	1566, 1596
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 505, 1571
Bse1I	ACTGG	3 cut(s)	515, 562, 1142
BseBI	CCWGG	1 cut(s)	1566
BseGI	GGATG	5 cut(s)	232, 395, 443, 813, 868
BseLI	CCNNNNNNNGG	3 cut(s)	79, 505, 1571
BseMII	CTCAG	2 cut(s)	683, 1041
BseNI	ACTGG	3 cut(s)	515, 562, 1142
BseRI	GAGGAG	6 cut(s)	161, 164, 167, 170, 998, 1587
BseXI	GCAGC	3 cut(s)	278, 652, 1369
Bsh1236I	CGCG	2 cut(s)	303, 614
Bsh1285I	CGRYCG	1 cut(s)	117
BshFI	GGCC	4 cut(s)	83, 467, 531, 891
BsiEI	CGRYCG	1 cut(s)	117
BsiHKAI	GWGCWC	1 cut(s)	553
BsiHKCI	CYCGRG	1 cut(s)	1320
BsiSI	CCGG	5 cut(s)	46, 113, 532, 1396, 1590
BslI	CCNNNNNNNGG	3 cut(s)	79, 505, 1571
BsmAI	GTCTC	1 cut(s)	1046
BsmI	GAATGC	3 cut(s)	33, 542, 627
BsnI	GGCC	4 cut(s)	83, 467, 531, 891
BsoBI	CYCGRG	1 cut(s)	1320
Bsp119I	TTCGAA	2 cut(s)	107, 817
Bsp1286I	GDGCHC	1 cut(s)	553
Bsp1407I	TGTACA	1 cut(s)	1156
Bsp143I	GATC	3 cut(s)	1149, 1524, 1577
BspACI	CCGC	5 cut(s)	5, 30, 340, 1418, 1618
BspANI	GGCC	4 cut(s)	83, 467, 531, 891
BspCNI	CTCAG	2 cut(s)	682, 1042
BspFNI	CGCG	2 cut(s)	303, 614
BspLI	GGNNCC	2 cut(s)	588, 1515
BspPI	GGATC	2 cut(s)	1532, 1585
BspQI	GCTCTTC	3 cut(s)	156, 477, 1408
BspT104I	TTCGAA	2 cut(s)	107, 817
BspTI	CTTAAG	1 cut(s)	605
BsrBI	CCGCTC	2 cut(s)	340, 1418
BsrGI	TGTACA	1 cut(s)	1156
BsrI	ACTGG	3 cut(s)	515, 562, 1142
BssMI	GATC	3 cut(s)	1149, 1524, 1577
BssNI	GRCGYC	1 cut(s)	248
Bst2UI	CCWGG	1 cut(s)	1566
Bst4CI	ACNGT	1 cut(s)	1349
Bst6I	CTCTTC	7 cut(s)	138, 156, 191, 438, 477, 1408, 1564
BstACI	GRCGYC	1 cut(s)	248
BstAFI	CTTAAG	1 cut(s)	605
BstAPI	GCANNNNNTGC	1 cut(s)	370
BstAUI	TGTACA	1 cut(s)	1156
BstBAI	YACGTR	2 cut(s)	656, 995
BstBI	TTCGAA	2 cut(s)	107, 817
BstC8I	GCNNGC	7 cut(s)	291, 507, 612, 925, 990, 1173, 1245
BstDEI	CTNAG	3 cut(s)	618, 669, 1050
BstENI	CCTNNNNNAGG	1 cut(s)	1569
BstF5I	GGATG	5 cut(s)	232, 395, 443, 813, 868
BstFNI	CGCG	2 cut(s)	303, 614
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	3 cut(s)	1152, 1527, 1580
BstMAI	GTCTC	1 cut(s)	1046
BstMBI	GATC	3 cut(s)	1149, 1524, 1577
BstMCI	CGRYCG	1 cut(s)	117
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 266, 370, 537, 883, 1249
BstNI	CCWGG	1 cut(s)	1566
BstNSI	RCATGY	2 cut(s)	377, 927
BstSCI	CCNGG	3 cut(s)	111, 531, 1564
BstUI	CGCG	2 cut(s)	303, 614
BstV1I	GCAGC	3 cut(s)	278, 652, 1369
BstV2I	GAAGAC	2 cut(s)	15, 209
BsuRI	GGCC	4 cut(s)	83, 467, 531, 891
BtsCI	GGATG	5 cut(s)	232, 395, 443, 813, 868
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	4 cut(s)	60, 183, 1149, 1305
Cac8I	GCNNGC	7 cut(s)	291, 507, 612, 925, 990, 1173, 1245
CaiI	CAGNNNCTG	3 cut(s)	131, 182, 221
CfoI	GCGC	1 cut(s)	305
Cfr13I	GGNCC	1 cut(s)	1592
CpoI	CGGWCCG	1 cut(s)	1592
CseI	GACGC	2 cut(s)	20, 603
Csp6I	GTAC	2 cut(s)	996, 1157
CspCI	CAANNNNNGTGG	2 cut(s)	1128, 1163
CspI	CGGWCCG	1 cut(s)	1592
CviAII	CATG	6 cut(s)	374, 592, 924, 1007, 1290, 1528
CviQI	GTAC	2 cut(s)	996, 1157
DdeI	CTNAG	3 cut(s)	618, 669, 1050
DpnI	GATC	3 cut(s)	1151, 1526, 1579
DpnII	GATC	3 cut(s)	1149, 1524, 1577
EaeI	YGGCCR	2 cut(s)	465, 529
Eam1104I	CTCTTC	7 cut(s)	138, 156, 191, 438, 477, 1408, 1564
EarI	CTCTTC	7 cut(s)	138, 156, 191, 438, 477, 1408, 1564
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	1592
Eco57I	CTGAAG	2 cut(s)	198, 1258
Eco72I	CACGTG	1 cut(s)	656
Eco88I	CYCGRG	1 cut(s)	1320
EcoNI	CCTNNNNNAGG	1 cut(s)	1569
EcoRII	CCWGG	1 cut(s)	1564
EcoT22I	ATGCAT	1 cut(s)	1008
FaeI	CATG	6 cut(s)	377, 595, 927, 1010, 1293, 1531
FatI	CATG	6 cut(s)	373, 591, 923, 1006, 1289, 1527
FauI	CCCGC	2 cut(s)	333, 1411
Fnu4HI	GCNGC	4 cut(s)	31, 267, 666, 1383
FokI	GGATG	5 cut(s)	239, 382, 450, 820, 875
Fsp4HI	GCNGC	4 cut(s)	31, 267, 666, 1383
FspBI	CTAG	2 cut(s)	170, 1103
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	4 cut(s)	31, 267, 666, 1383
HaeIII	GGCC	4 cut(s)	83, 467, 531, 891
HapII	CCGG	5 cut(s)	46, 113, 532, 1396, 1590
HgaI	GACGC	2 cut(s)	20, 603
HhaI	GCGC	1 cut(s)	305
Hin1I	GRCGYC	1 cut(s)	248
Hin1II	CATG	6 cut(s)	377, 595, 927, 1010, 1293, 1531
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HincII	GTYRAC	1 cut(s)	1267
HindII	GTYRAC	1 cut(s)	1267
HindIII	AAGCTT	1 cut(s)	827
HinfI	GANTC	8 cut(s)	75, 218, 231, 344, 640, 866, 908, 1373
HpaII	CCGG	5 cut(s)	46, 113, 532, 1396, 1590
HphI	GGTGA	2 cut(s)	928, 1385
Hpy166II	GTNNAC	2 cut(s)	1088, 1267
Hpy188I	TCNGA	8 cut(s)	217, 356, 418, 672, 871, 1051, 1234, 1277
Hpy188III	TCNNGA	4 cut(s)	72, 404, 429, 1370
Hpy8I	GTNNAC	2 cut(s)	1088, 1267
HpyAV	CCTTC	4 cut(s)	945, 1171, 1416, 1624
HpyCH4III	ACNGT	1 cut(s)	1349
HpyCH4IV	ACGT	3 cut(s)	248, 655, 994
HpyCH4V	TGCA	6 cut(s)	125, 373, 687, 992, 1006, 1223
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 266, 370, 537, 883, 1249
HpyF3I	CTNAG	3 cut(s)	618, 669, 1050
HpySE526I	ACGT	3 cut(s)	248, 655, 994
Hsp92I	GRCGYC	1 cut(s)	248
Hsp92II	CATG	6 cut(s)	377, 595, 927, 1010, 1293, 1531
HspAI	GCGC	1 cut(s)	303
Kzo9I	GATC	3 cut(s)	1149, 1524, 1577
LguI	GCTCTTC	3 cut(s)	156, 477, 1408
LmnI	GCTCC	2 cut(s)	556, 985
Lsp1109I	GCAGC	3 cut(s)	278, 652, 1369
LweI	GCATC	3 cut(s)	1000, 1350, 1505
MaeI	CTAG	2 cut(s)	170, 1103
MaeII	ACGT	3 cut(s)	248, 655, 994
MalI	GATC	3 cut(s)	1151, 1526, 1579
MbiI	CCGCTC	2 cut(s)	340, 1418
MboI	GATC	3 cut(s)	1149, 1524, 1577
MhlI	GDGCHC	1 cut(s)	553
MluCI	AATT	9 cut(s)	320, 409, 460, 659, 710, 832, 1067, 1097, 1357
MluI	ACGCGT	1 cut(s)	612
MlyI	GAGTC	1 cut(s)	875
MmeI	TCCRAC	1 cut(s)	578
Mph1103I	ATGCAT	1 cut(s)	1008
MroXI	GAANNNNTTC	1 cut(s)	1461
MslI	CAYNNNNRTG	1 cut(s)	596
MspCI	CTTAAG	1 cut(s)	605
MspI	CCGG	5 cut(s)	46, 113, 532, 1396, 1590
MspR9I	CCNGG	3 cut(s)	113, 533, 1566
Mva1269I	GAATGC	3 cut(s)	33, 542, 627
MvaI	CCWGG	1 cut(s)	1566
MvnI	CGCG	2 cut(s)	303, 614
MwoI	GCNNNNNNNGC	6 cut(s)	11, 266, 370, 537, 883, 1249
NciI	CCSGG	2 cut(s)	113, 533
NdeII	GATC	3 cut(s)	1149, 1524, 1577
NlaIII	CATG	6 cut(s)	377, 595, 927, 1010, 1293, 1531
NlaIV	GGNNCC	2 cut(s)	588, 1515
NsiI	ATGCAT	1 cut(s)	1008
NspI	RCATGY	2 cut(s)	377, 927
NspV	TTCGAA	2 cut(s)	107, 817
PaeI	GCATGC	1 cut(s)	927
PciSI	GCTCTTC	3 cut(s)	156, 477, 1408
PctI	GAATGC	3 cut(s)	33, 542, 627
PdmI	GAANNNNTTC	1 cut(s)	1461
PfeI	GAWTC	7 cut(s)	75, 218, 231, 344, 640, 908, 1373
PkrI	GCNGC	4 cut(s)	32, 268, 667, 1384
PleI	GAGTC	1 cut(s)	874
PmaCI	CACGTG	1 cut(s)	656
PmlI	CACGTG	1 cut(s)	656
PpsI	GAGTC	1 cut(s)	874
Ppu21I	YACGTR	2 cut(s)	656, 995
PshBI	ATTAAT	1 cut(s)	1356
Psp6I	CCWGG	1 cut(s)	1564
PspCI	CACGTG	1 cut(s)	656
PspGI	CCWGG	1 cut(s)	1564
PspN4I	GGNNCC	2 cut(s)	588, 1515
PspPI	GGNCC	1 cut(s)	1592
PstNI	CAGNNNCTG	3 cut(s)	131, 182, 221
RsaI	GTAC	2 cut(s)	997, 1158
RsaNI	GTAC	2 cut(s)	996, 1157
RseI	CAYNNNNRTG	1 cut(s)	596
Rsr2I	CGGWCCG	1 cut(s)	1592
RsrII	CGGWCCG	1 cut(s)	1592
SapI	GCTCTTC	3 cut(s)	156, 477, 1408
SatI	GCNGC	4 cut(s)	31, 267, 666, 1383
Sau3AI	GATC	3 cut(s)	1149, 1524, 1577
Sau96I	GGNCC	1 cut(s)	1592
SchI	GAGTC	1 cut(s)	875
ScrFI	CCNGG	3 cut(s)	113, 533, 1566
SduI	GDGCHC	1 cut(s)	553
SfaNI	GCATC	3 cut(s)	1000, 1350, 1505
SfuI	TTCGAA	2 cut(s)	107, 817
SinI	GGWCC	1 cut(s)	1592
SmiMI	CAYNNNNRTG	1 cut(s)	596
SmlI	CTYRAG	4 cut(s)	335, 404, 427, 605
SmoI	CTYRAG	4 cut(s)	335, 404, 427, 605
SpeI	ACTAGT	1 cut(s)	169
SphI	GCATGC	1 cut(s)	927
Sse9I	AATT	9 cut(s)	320, 409, 460, 659, 710, 832, 1067, 1097, 1357
SsiI	CCGC	5 cut(s)	5, 30, 340, 1418, 1618
SspMI	CTAG	2 cut(s)	170, 1103
StyD4I	CCNGG	3 cut(s)	111, 531, 1564
TaaI	ACNGT	1 cut(s)	1349
TaiI	ACGT	3 cut(s)	251, 658, 997
TaqI	TCGA	7 cut(s)	78, 107, 117, 631, 817, 1018, 1111
TaqII	GACCGA	1 cut(s)	1609
TasI	AATT	9 cut(s)	320, 409, 460, 659, 710, 832, 1067, 1097, 1357
TatI	WGTACW	1 cut(s)	1156
TauI	GCSGC	1 cut(s)	33
TfiI	GAWTC	7 cut(s)	75, 218, 231, 344, 640, 908, 1373
TscAI	CASTG	4 cut(s)	67, 183, 1149, 1312
TseI	GCWGC	3 cut(s)	266, 665, 1382
TspDTI	ATGAA	6 cut(s)	6, 312, 614, 1470, 1617, 1677
TspGWI	ACGGA	3 cut(s)	221, 820, 1489
TspRI	CASTG	4 cut(s)	67, 183, 1149, 1312
Vha464I	CTTAAG	1 cut(s)	605
VpaK11BI	GGWCC	1 cut(s)	1592
VspI	ATTAAT	1 cut(s)	1356
XagI	CCTNNNNNAGG	1 cut(s)	1569
XapI	RAATTY	3 cut(s)	409, 710, 1097
XceI	RCATGY	2 cut(s)	377, 927
XmnI	GAANNNNTTC	1 cut(s)	1461
XspI	CTAG	2 cut(s)	170, 1103
ZraI	GACGTC	1 cut(s)	249
Zsp2I	ATGCAT	1 cut(s)	1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.