Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014364

Physical Location & Seq

Genomic Coordinates Reverse (-)

9683453 .. 9685399

Gene Structure 1947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g15580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCTTCCTATAACTATAAGGAGCACTCTTTGGTTTCAAGCTTCGTGATCACGTTATTTCTGTTGGTCTTGCAATTTCAAGTTGGTACAAGTGAGCTGCAACAGAACTATTATTCCCAGAGTTGCCCTAAAGCTGAAGAAATCATCAAGCAAGAGGTCACAAACCTATACAATGAACATGGAAATACCGCCGTCTCCTGGATCAGAAATCTCTTCCACGATTGCATTGTTGAGGGATGTGATGCGTCTCTGCTGTTAGAGGCGGCAGACGGCATCGAGTCAGAAAAGGCGTCGGATCGGAGCTTTGGGATGAGAAATTTTAAGTACGTGAACACCATCAAAGAGGCCCTAGAGAAGGAATGCCCTCTTACAGTTTCTTGTGCTGATGTTGTTACTCTTTCTGCAAGAGATGGCATTGTCATGTTAGGAGGGCCTCGGATTGAAATGAAGACGGGAAGGAGAGACAGCAAGGAGAGTCATGCAAAAGTGGTGGATGAGTCTATTCCTAATCACAATGATTCCATCTCCTCAGTGCTCTCTCGATTTCAATCGATTGGCATCGATACTGAAGGAACAGTTGCCCTTTTAGGAGCTCACTCCGTGGGTAGAGTTCACTGTGTGAACCTTGTGCACAGACTCTACCCTGCTGTTGATCCAACCTTGGATCCCGACCATGCTGCGTACCTCAAAAATCGGTGCCCGACTCCAAATCCTGACCCAAAAGCAGTCGAGTATTCAAGATTCGACCTCAAAACACCAATGATTCTGGATAACATGTACTACAAGAACGTCTTGAACCACAAGGGTTTGCTCATAATTGATCAGCAACTGAGTTCTGACGCAGATACGTTGCCTTTTGTGGAGAAGATGGCTTCCGATAACGGATACTTCTACGAACAGATTTCAAGAGCTATAGTTCTTCTGTCCGAGAACAATCCACTTACCGGAGACCAAGGAGAGATCAGAAAGGATTGCCGCTATGTGAACGACATGTTAGTCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

335

Amino Acids

37.37

Weight (kDa)

5.23

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	49 - 293	1.3e-71	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37130 AT2G37130
fragaria_vesca	FvH4_6g15580
malus_domestica	MD04G1101700.v1.1
prunus_persica	Prupe.6G239400_v2.0.a1 Prupe.6G239400_v2.0.a1
pyrus_communis	pycom04g09720
rosa_chinensis	RchiOBHm_Chr3g0469141
rosa_laevigata	RLG00000024370
rosa_multiflora	Rmu_sc0000302.1_g000012
rosa_roxburghii	Rroxscaffold_6G00412160
rosa_rugosa	Rorug03G0100000 Rorug03G0100000
rosa_samantha	Rh3AG149100 Rh3BG172300 Rh3DG203300
rosa_wichuraiana	Rw3G014060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	995
AccB1I	GGYRCC	1 cut(s)	696
AciI	CCGC	3 cut(s)	189, 263, 976
AclWI	GGATC	5 cut(s)	209, 303, 647, 659, 672
AcsI	RAATTY	1 cut(s)	316
AcuI	CTGAAG	2 cut(s)	156, 588
AcyI	GRCGYC	1 cut(s)	290
AdeI	CACNNNGTG	2 cut(s)	601, 619
AfaI	GTAC	4 cut(s)	88, 326, 683, 779
AfiI	CCNNNNNNNGG	3 cut(s)	198, 355, 944
AflIII	ACRYGT	2 cut(s)	774, 990
AgsI	TTSAA	7 cut(s)	39, 80, 443, 548, 738, 796, 906
AjnI	CCWGG	1 cut(s)	197
AloI	GAACNNNNNNTCC	2 cut(s)	98, 130
AluBI	AGCT	6 cut(s)	42, 97, 134, 303, 593, 911
AluI	AGCT	6 cut(s)	42, 97, 134, 303, 593, 911
Alw21I	GWGCWC	4 cut(s)	27, 537, 595, 633
Alw26I	GTCTC	4 cut(s)	199, 252, 456, 942
Alw44I	GTGCAC	1 cut(s)	629
AlwI	GGATC	5 cut(s)	209, 303, 647, 659, 672
AlwNI	CAGNNNCTG	1 cut(s)	829
AoxI	GGCC	2 cut(s)	345, 431
ApaLI	GTGCAC	1 cut(s)	629
ApeKI	GCWGC	2 cut(s)	97, 677
ApoI	RAATTY	1 cut(s)	316
AspS9I	GGNCC	2 cut(s)	346, 431
BaeGI	GKGCMC	2 cut(s)	633, 701
BamHI	GGATCC	1 cut(s)	664
BanI	GGYRCC	1 cut(s)	696
BanII	GRGCYC	1 cut(s)	595
BbsI	GAAGAC	1 cut(s)	455
Bbv12I	GWGCWC	4 cut(s)	27, 537, 595, 633
BbvI	GCAGC	2 cut(s)	84, 664
BccI	CCATC	4 cut(s)	344, 404, 530, 862
BceAI	ACGGC	2 cut(s)	176, 286
BcgI	CGANNNNNNTGC	2 cut(s)	659, 693
BciT130I	CCWGG	1 cut(s)	199
BciVI	GTATCC	1 cut(s)	878
BclI	TGATCA	2 cut(s)	48, 820
BcoDI	GTCTC	4 cut(s)	199, 252, 456, 942
BfaI	CTAG	1 cut(s)	350
BfmI	CTRYAG	1 cut(s)	912
BfuI	GTATCC	1 cut(s)	878
BisI	GCNGC	4 cut(s)	98, 264, 678, 976
BlsI	GCNGC	4 cut(s)	99, 265, 679, 977
Bme1390I	CCNGG	1 cut(s)	199
BmgT120I	GGNCC	2 cut(s)	346, 431
BmiI	GGNNCC	2 cut(s)	666, 698
BmrFI	CCNGG	1 cut(s)	199
BmsI	GCATC	3 cut(s)	232, 282, 567
BpiI	GAAGAC	1 cut(s)	455
Bsa29I	ATCGAT	2 cut(s)	551, 561
BsaAI	YACGTR	1 cut(s)	328
BsaBI	GATNNNNATC	2 cut(s)	547, 557
BsaHI	GRCGYC	1 cut(s)	290
BsaI	GGTCTC	1 cut(s)	942
BsaJI	CCNNGG	4 cut(s)	434, 600, 660, 952
BsaWI	WCCGGW	1 cut(s)	944
Bsc4I	CCNNNNNNNGG	3 cut(s)	198, 355, 944
Bse8I	GATNNNNATC	2 cut(s)	547, 557
BseBI	CCWGG	1 cut(s)	199
BseCI	ATCGAT	2 cut(s)	551, 561
BseDI	CCNNGG	4 cut(s)	434, 600, 660, 952
BseGI	GGATG	3 cut(s)	242, 315, 499
BseJI	GATNNNNATC	2 cut(s)	547, 557
BseLI	CCNNNNNNNGG	3 cut(s)	198, 355, 944
BseMII	CTCAG	2 cut(s)	543, 821
BseRI	GAGGAG	1 cut(s)	517
BseSI	GKGCMC	2 cut(s)	633, 701
BseXI	GCAGC	2 cut(s)	84, 664
BshFI	GGCC	2 cut(s)	347, 433
BshNI	GGYRCC	1 cut(s)	696
BshVI	ATCGAT	2 cut(s)	551, 561
BsiHKAI	GWGCWC	4 cut(s)	27, 537, 595, 633
BsiSI	CCGG	1 cut(s)	945
BslI	CCNNNNNNNGG	3 cut(s)	198, 355, 944
BsmAI	GTCTC	4 cut(s)	199, 252, 456, 942
BsmBI	CGTCTC	2 cut(s)	199, 252
BsmI	GAATGC	1 cut(s)	365
BsnI	GGCC	2 cut(s)	347, 433
Bso31I	GGTCTC	1 cut(s)	942
Bsp1286I	GDGCHC	5 cut(s)	27, 537, 595, 633, 701
Bsp143I	GATC	7 cut(s)	48, 201, 295, 652, 664, 820, 960
BspACI	CCGC	3 cut(s)	189, 263, 976
BspANI	GGCC	2 cut(s)	347, 433
BspCNI	CTCAG	2 cut(s)	542, 822
BspDI	ATCGAT	2 cut(s)	551, 561
BspLI	GGNNCC	2 cut(s)	666, 698
BspPI	GGATC	5 cut(s)	209, 303, 647, 659, 672
BspT107I	GGYRCC	1 cut(s)	696
BspTNI	GGTCTC	1 cut(s)	942
BssECI	CCNNGG	4 cut(s)	434, 600, 660, 952
BssMI	GATC	7 cut(s)	48, 201, 295, 652, 664, 820, 960
BssNI	GRCGYC	1 cut(s)	290
BssT1I	CCWWGG	2 cut(s)	660, 952
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	3 cut(s)	373, 577, 617
Bst6I	CTCTTC	1 cut(s)	218
BstACI	GRCGYC	1 cut(s)	290
BstBAI	YACGTR	1 cut(s)	328
BstDEI	CTNAG	2 cut(s)	529, 830
BstDSI	CCRYGG	1 cut(s)	600
BstENI	CCTNNNNNAGG	1 cut(s)	353
BstF5I	GGATG	3 cut(s)	242, 315, 499
BstKTI	GATC	7 cut(s)	51, 204, 298, 655, 667, 823, 963
BstMAI	GTCTC	4 cut(s)	199, 252, 456, 942
BstMBI	GATC	7 cut(s)	48, 201, 295, 652, 664, 820, 960
BstNI	CCWGG	1 cut(s)	199
BstNSI	RCATGY	2 cut(s)	778, 994
BstSCI	CCNGG	1 cut(s)	197
BstSFI	CTRYAG	1 cut(s)	912
BstSLI	GKGCMC	2 cut(s)	633, 701
BstV1I	GCAGC	2 cut(s)	84, 664
BstV2I	GAAGAC	1 cut(s)	455
BstX2I	RGATCY	1 cut(s)	664
BstYI	RGATCY	1 cut(s)	664
Bsu15I	ATCGAT	2 cut(s)	551, 561
BsuI	GTATCC	1 cut(s)	878
BsuRI	GGCC	2 cut(s)	347, 433
BsuTUI	ATCGAT	2 cut(s)	551, 561
BtgI	CCRYGG	1 cut(s)	600
BtsCI	GGATG	3 cut(s)	242, 315, 499
BtsIMutI	CAGTG	2 cut(s)	537, 613
CaiI	CAGNNNCTG	1 cut(s)	829
Cfr13I	GGNCC	2 cut(s)	346, 431
ClaI	ATCGAT	2 cut(s)	551, 561
CseI	GACGC	3 cut(s)	234, 279, 848
Csp6I	GTAC	4 cut(s)	87, 325, 682, 778
CspCI	CAANNNNNGTGG	2 cut(s)	471, 506
CviAII	CATG	6 cut(s)	179, 421, 479, 674, 775, 991
CviQI	GTAC	4 cut(s)	87, 325, 682, 778
DdeI	CTNAG	2 cut(s)	529, 830
DpnI	GATC	7 cut(s)	50, 203, 297, 654, 666, 822, 962
DpnII	GATC	7 cut(s)	48, 201, 295, 652, 664, 820, 960
DraIII	CACNNNGTG	2 cut(s)	601, 619
DrdI	GACNNNNNNGTC	1 cut(s)	995
DseDI	GACNNNNNNGTC	1 cut(s)	995
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Ecl136II	GAGCTC	1 cut(s)	593
Eco130I	CCWWGG	2 cut(s)	660, 952
Eco24I	GRGCYC	1 cut(s)	595
Eco31I	GGTCTC	1 cut(s)	942
Eco53kI	GAGCTC	1 cut(s)	593
Eco57I	CTGAAG	2 cut(s)	156, 588
EcoICRI	GAGCTC	1 cut(s)	593
EcoNI	CCTNNNNNAGG	1 cut(s)	353
EcoO109I	RGGNCCY	2 cut(s)	346, 431
EcoRII	CCWGG	1 cut(s)	197
EcoT14I	CCWWGG	2 cut(s)	660, 952
EcoT38I	GRGCYC	1 cut(s)	595
ErhI	CCWWGG	2 cut(s)	660, 952
Esp3I	CGTCTC	2 cut(s)	199, 252
FaeI	CATG	6 cut(s)	182, 424, 482, 677, 778, 994
FalI	AAGNNNNNCTT	2 cut(s)	776, 808
FatI	CATG	6 cut(s)	178, 420, 478, 673, 774, 990
FauNDI	CATATG	1 cut(s)	1001
FbaI	TGATCA	2 cut(s)	48, 820
Fnu4HI	GCNGC	4 cut(s)	98, 264, 678, 976
FokI	GGATG	3 cut(s)	249, 322, 506
FriOI	GRGCYC	1 cut(s)	595
Fsp4HI	GCNGC	4 cut(s)	98, 264, 678, 976
FspBI	CTAG	1 cut(s)	350
GluI	GCNGC	4 cut(s)	98, 264, 678, 976
HaeIII	GGCC	2 cut(s)	347, 433
HapII	CCGG	1 cut(s)	945
HgaI	GACGC	3 cut(s)	234, 279, 848
Hin1I	GRCGYC	1 cut(s)	290
Hin1II	CATG	6 cut(s)	182, 424, 482, 677, 778, 994
HindIII	AAGCTT	1 cut(s)	40
HinfI	GANTC	8 cut(s)	278, 475, 497, 518, 636, 703, 741, 763
HpaII	CCGG	1 cut(s)	945
Hpy166II	GTNNAC	5 cut(s)	331, 613, 622, 631, 985
Hpy188I	TCNGA	9 cut(s)	206, 283, 295, 300, 438, 838, 877, 928, 965
Hpy188III	TCNNGA	8 cut(s)	46, 540, 668, 713, 738, 767, 793, 906
Hpy8I	GTNNAC	5 cut(s)	331, 613, 622, 631, 985
Hpy99I	CGWCG	1 cut(s)	295
HpyAV	CCTTC	3 cut(s)	349, 450, 563
HpyCH4III	ACNGT	3 cut(s)	373, 577, 617
HpyCH4IV	ACGT	4 cut(s)	53, 327, 789, 848
HpyCH4V	TGCA	6 cut(s)	73, 100, 225, 404, 482, 631
HpyF3I	CTNAG	2 cut(s)	529, 830
HpySE526I	ACGT	4 cut(s)	53, 327, 789, 848
Hsp92I	GRCGYC	1 cut(s)	290
Hsp92II	CATG	6 cut(s)	182, 424, 482, 677, 778, 994
Ksp22I	TGATCA	2 cut(s)	48, 820
Kzo9I	GATC	7 cut(s)	48, 201, 295, 652, 664, 820, 960
LmnI	GCTCC	3 cut(s)	22, 300, 590
LpnPI	CCDG	7 cut(s)	131, 184, 211, 657, 726, 752, 958
Lsp1109I	GCAGC	2 cut(s)	84, 664
LweI	GCATC	3 cut(s)	232, 282, 567
MaeI	CTAG	1 cut(s)	350
MaeII	ACGT	4 cut(s)	53, 327, 789, 848
MaeIII	GTNAC	2 cut(s)	157, 391
MalI	GATC	7 cut(s)	50, 203, 297, 654, 666, 822, 962
MboI	GATC	7 cut(s)	48, 201, 295, 652, 664, 820, 960
MboII	GAAGA	5 cut(s)	149, 205, 460, 877, 911
MflI	RGATCY	1 cut(s)	664
MhlI	GDGCHC	5 cut(s)	27, 537, 595, 633, 701
MluCI	AATT	3 cut(s)	74, 316, 816
MlyI	GAGTC	5 cut(s)	287, 484, 506, 630, 697
MmeI	TCCRAC	2 cut(s)	273, 680
MseI	TTAA	1 cut(s)	321
MslI	CAYNNNNRTG	1 cut(s)	419
MspI	CCGG	1 cut(s)	945
MspR9I	CCNGG	1 cut(s)	199
Mva1269I	GAATGC	1 cut(s)	365
MvaI	CCWGG	1 cut(s)	199
NdeI	CATATG	1 cut(s)	1001
NdeII	GATC	7 cut(s)	48, 201, 295, 652, 664, 820, 960
NlaIII	CATG	6 cut(s)	182, 424, 482, 677, 778, 994
NlaIV	GGNNCC	2 cut(s)	666, 698
NmuCI	GTSAC	1 cut(s)	157
NspI	RCATGY	2 cut(s)	778, 994
PciI	ACATGT	2 cut(s)	774, 990
PctI	GAATGC	1 cut(s)	365
PfeI	GAWTC	3 cut(s)	518, 741, 763
PfoI	TCCNGGA	1 cut(s)	197
PkrI	GCNGC	4 cut(s)	99, 265, 679, 977
PleI	GAGTC	5 cut(s)	286, 483, 505, 630, 697
PpsI	GAGTC	5 cut(s)	286, 483, 505, 630, 697
Ppu21I	YACGTR	1 cut(s)	328
PscI	ACATGT	2 cut(s)	774, 990
Psp124BI	GAGCTC	1 cut(s)	595
Psp6I	CCWGG	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	197
PspN4I	GGNNCC	2 cut(s)	666, 698
PspPI	GGNCC	2 cut(s)	346, 431
PstNI	CAGNNNCTG	1 cut(s)	829
PsuI	RGATCY	1 cut(s)	664
RsaI	GTAC	4 cut(s)	88, 326, 683, 779
RsaNI	GTAC	4 cut(s)	87, 325, 682, 778
RseI	CAYNNNNRTG	1 cut(s)	419
SacI	GAGCTC	1 cut(s)	595
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	4 cut(s)	98, 264, 678, 976
Sau3AI	GATC	7 cut(s)	48, 201, 295, 652, 664, 820, 960
Sau96I	GGNCC	2 cut(s)	346, 431
SchI	GAGTC	5 cut(s)	287, 484, 506, 630, 697
ScrFI	CCNGG	1 cut(s)	199
SduI	GDGCHC	5 cut(s)	27, 537, 595, 633, 701
SfaNI	GCATC	3 cut(s)	232, 282, 567
SfcI	CTRYAG	1 cut(s)	912
SmiMI	CAYNNNNRTG	1 cut(s)	419
Sse9I	AATT	3 cut(s)	74, 316, 816
SsiI	CCGC	3 cut(s)	189, 263, 976
SspMI	CTAG	1 cut(s)	350
SstI	GAGCTC	1 cut(s)	595
StyD4I	CCNGG	1 cut(s)	197
StyI	CCWWGG	2 cut(s)	660, 952
TaaI	ACNGT	3 cut(s)	373, 577, 617
TaiI	ACGT	4 cut(s)	56, 330, 792, 851
TaqI	TCGA	6 cut(s)	276, 541, 551, 561, 729, 744
TasI	AATT	3 cut(s)	74, 316, 816
TatI	WGTACW	1 cut(s)	777
TauI	GCSGC	2 cut(s)	266, 978
TfiI	GAWTC	3 cut(s)	518, 741, 763
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	2 cut(s)	537, 620
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	2 cut(s)	97, 677
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	189, 461
TspGWI	ACGGA	2 cut(s)	589, 897
TspRI	CASTG	2 cut(s)	537, 620
VneI	GTGCAC	1 cut(s)	629
XagI	CCTNNNNNAGG	1 cut(s)	353
XapI	RAATTY	1 cut(s)	316
XceI	RCATGY	2 cut(s)	778, 994
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.