RLG00000024370

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0014364
Physical Location & Seq
Forward (+)
35219518 .. 35221252
1735 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024370

Sequence Viewer

Length: 768 bp
ATGCAGGGATGTGATGCTTCTCTGTTGTTAGATGCGGCAGACAGCGTGGAGTCAGAGAAAGCGTCGGGTCGGAGCTTTGGGATGAGAAATTTTAAGTACGTGAACACCATCAAACAGGCCCTAGAGAAGGAATGTCCTCTTACAGTTTCTTGCGCTGATGTTATAACTCTTTCTGCAAGAGATGGCATTGTCATGTTAGGAGGGCCTCGGATTGAAATGAAAACAGGAAGGAGAGACAGCAAGGAGAGTCATGCAAGAGTGGTGGATGAGTCTATACCAAATCACAATGATTCCATCTCCTTGGTGCTCTCTCGATTTCAATCGATTGGCATCGATGTTGAAGGAACAGTTGCCCTTTTAGGAGCTCACTCCGTGGGCCGGGTTCACTGTGTGAACCTTGTTCACAGACTTTACCCTACTGTTGATCCAACTTTGGATCCCGACTATGCGGCGTACCTCAAAGTTCGCTGCCCGACTCCAATTCCTGACCCGAAAGCACTGCAGTATTCAAGATTCGACCGCGAAACACCCATGATTTTGGATAACATGTACTACAAGAACGTCTTGAACCACAAGGGTTTGCTCATAATTGATCAACAACTGAGTTCTGACCCAGAGACATTGCCTTTTGTGGAGAAGATGGCTTCCGATAATGGATACTTCTACGAGCAATTTTCGAGAGCTGCAATTCTGTTGTCGGAGAACAATCCACTTACCGGAGACCAAGGAGAGATCAGAAAGGATTGCCGCTATGTGAACGGCAGTTAG

Protein Analysis

256

Amino Acids

28.31

Weight (kDa)

5.55

Isoelectric Point (pI)

35.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 2 - 217 4e-62 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014364)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37130 AT2G37130
fragaria_vesca FvH4_6g15580
malus_domestica MD04G1101700.v1.1
prunus_persica Prupe.6G239400_v2.0.a1 Prupe.6G239400_v2.0.a1
pyrus_communis pycom04g09720
rosa_chinensis RchiOBHm_Chr3g0469141
rosa_laevigata RLG00000024370
rosa_multiflora Rmu_sc0000302.1_g000012
rosa_roxburghii Rroxscaffold_6G00412160
rosa_rugosa Rorug03G0100000 Rorug03G0100000
rosa_samantha Rh3AG149100 Rh3BG172300 Rh3DG203300
rosa_wichuraiana Rw3G014060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 164
AccII CGCG 1 cut(s) 522
AciI CCGC 4 cut(s) 35, 449, 520, 748
AclWI GGATC 3 cut(s) 419, 431, 444
AcsI RAATTY 1 cut(s) 88
AdeI CACNNNGTG 2 cut(s) 373, 391
AfaI GTAC 3 cut(s) 98, 455, 551
AfiI CCNNNNNNNGG 3 cut(s) 127, 378, 716
AflIII ACRYGT 1 cut(s) 546
AgsI TTSAA 5 cut(s) 215, 320, 341, 510, 568
AluBI AGCT 3 cut(s) 75, 365, 683
AluI AGCT 3 cut(s) 75, 365, 683
Alw21I GWGCWC 2 cut(s) 309, 367
Alw26I GTCTC 3 cut(s) 228, 611, 714
AlwI GGATC 3 cut(s) 419, 431, 444
AoxI GGCC 3 cut(s) 117, 203, 376
ApeKI GCWGC 2 cut(s) 468, 683
ApoI RAATTY 1 cut(s) 88
AspLEI GCGC 1 cut(s) 155
AspS9I GGNCC 3 cut(s) 118, 203, 376
AsuC2I CCSGG 1 cut(s) 380
BamHI GGATCC 1 cut(s) 436
BanII GRGCYC 1 cut(s) 367
Bbv12I GWGCWC 2 cut(s) 309, 367
BbvI GCAGC 2 cut(s) 455, 670
BccI CCATC 4 cut(s) 116, 176, 302, 634
BcgI CGANNNNNNTGC 2 cut(s) 481, 515
BciVI GTATCC 1 cut(s) 650
BclI TGATCA 1 cut(s) 592
BcnI CCSGG 1 cut(s) 380
BcoDI GTCTC 3 cut(s) 228, 611, 714
BfaI CTAG 1 cut(s) 122
BfmI CTRYAG 1 cut(s) 500
BfuI GTATCC 1 cut(s) 650
BisI GCNGC 5 cut(s) 36, 450, 469, 684, 748
BlsI GCNGC 5 cut(s) 37, 451, 470, 685, 749
Bme1390I CCNGG 1 cut(s) 380
BmgT120I GGNCC 3 cut(s) 118, 203, 376
BmiI GGNNCC 1 cut(s) 438
BmrFI CCNGG 1 cut(s) 380
BmsI GCATC 3 cut(s) 4, 22, 339
BpuMI CCSGG 1 cut(s) 380
Bsa29I ATCGAT 2 cut(s) 323, 333
BsaAI YACGTR 1 cut(s) 100
BsaBI GATNNNNATC 2 cut(s) 319, 329
BsaI GGTCTC 1 cut(s) 714
BsaJI CCNNGG 4 cut(s) 206, 300, 372, 724
BsaWI WCCGGW 1 cut(s) 716
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 378, 716
Bse3DI GCAATG 1 cut(s) 620
Bse8I GATNNNNATC 2 cut(s) 319, 329
BseCI ATCGAT 2 cut(s) 323, 333
BseDI CCNNGG 4 cut(s) 206, 300, 372, 724
BseGI GGATG 3 cut(s) 14, 87, 271
BseJI GATNNNNATC 2 cut(s) 319, 329
BseLI CCNNNNNNNGG 3 cut(s) 127, 378, 716
BseMI GCAATG 1 cut(s) 620
BseMII CTCAG 1 cut(s) 593
BseXI GCAGC 2 cut(s) 455, 670
Bsh1236I CGCG 1 cut(s) 522
Bsh1285I CGRYCG 1 cut(s) 520
BshFI GGCC 3 cut(s) 119, 205, 378
BshVI ATCGAT 2 cut(s) 323, 333
BsiEI CGRYCG 1 cut(s) 520
BsiHKAI GWGCWC 2 cut(s) 309, 367
BsiSI CCGG 2 cut(s) 379, 717
BslI CCNNNNNNNGG 3 cut(s) 127, 378, 716
BsmAI GTCTC 3 cut(s) 228, 611, 714
BsnI GGCC 3 cut(s) 119, 205, 378
Bso31I GGTCTC 1 cut(s) 714
Bsp1286I GDGCHC 2 cut(s) 309, 367
Bsp143I GATC 4 cut(s) 424, 436, 592, 732
BspACI CCGC 4 cut(s) 35, 449, 520, 748
BspANI GGCC 3 cut(s) 119, 205, 378
BspCNI CTCAG 1 cut(s) 594
BspDI ATCGAT 2 cut(s) 323, 333
BspFNI CGCG 1 cut(s) 522
BspLI GGNNCC 1 cut(s) 438
BspMAI CTGCAG 1 cut(s) 504
BspPI GGATC 3 cut(s) 419, 431, 444
BspTNI GGTCTC 1 cut(s) 714
BsrDI GCAATG 1 cut(s) 620
BssECI CCNNGG 4 cut(s) 206, 300, 372, 724
BssMI GATC 4 cut(s) 424, 436, 592, 732
BssT1I CCWWGG 2 cut(s) 300, 724
Bst4CI ACNGT 4 cut(s) 145, 349, 389, 421
BstBAI YACGTR 1 cut(s) 100
BstDEI CTNAG 1 cut(s) 602
BstDSI CCRYGG 1 cut(s) 372
BstENI CCTNNNNNAGG 1 cut(s) 125
BstF5I GGATG 3 cut(s) 14, 87, 271
BstFNI CGCG 1 cut(s) 522
BstHHI GCGC 1 cut(s) 155
BstKTI GATC 4 cut(s) 427, 439, 595, 735
BstMAI GTCTC 3 cut(s) 228, 611, 714
BstMBI GATC 4 cut(s) 424, 436, 592, 732
BstMCI CGRYCG 1 cut(s) 520
BstNSI RCATGY 1 cut(s) 550
BstSCI CCNGG 1 cut(s) 378
BstSFI CTRYAG 1 cut(s) 500
BstUI CGCG 1 cut(s) 522
BstV1I GCAGC 2 cut(s) 455, 670
BstX2I RGATCY 1 cut(s) 436
BstXI CCANNNNNNTGG 2 cut(s) 301, 538
BstYI RGATCY 1 cut(s) 436
Bsu15I ATCGAT 2 cut(s) 323, 333
BsuI GTATCC 1 cut(s) 650
BsuRI GGCC 3 cut(s) 119, 205, 378
BsuTUI ATCGAT 2 cut(s) 323, 333
BtgI CCRYGG 1 cut(s) 372
BtsCI GGATG 3 cut(s) 14, 87, 271
BtsI GCAGTG 1 cut(s) 497
BtsIMutI CAGTG 2 cut(s) 385, 497
CfoI GCGC 1 cut(s) 155
Cfr13I GGNCC 3 cut(s) 118, 203, 376
ClaI ATCGAT 2 cut(s) 323, 333
CseI GACGC 1 cut(s) 51
Csp6I GTAC 3 cut(s) 97, 454, 550
CspCI CAANNNNNGTGG 2 cut(s) 243, 278
CviAII CATG 4 cut(s) 193, 251, 532, 547
CviJI RGCY 7 cut(s) 75, 119, 205, 365, 378, 644, 683
CviKI_1 RGCY 7 cut(s) 75, 119, 205, 365, 378, 644, 683
CviQI GTAC 3 cut(s) 97, 454, 550
DdeI CTNAG 1 cut(s) 602
DpnI GATC 4 cut(s) 426, 438, 594, 734
DpnII GATC 4 cut(s) 424, 436, 592, 732
DraIII CACNNNGTG 2 cut(s) 373, 391
Ecl136II GAGCTC 1 cut(s) 365
Eco130I CCWWGG 2 cut(s) 300, 724
Eco24I GRGCYC 1 cut(s) 367
Eco31I GGTCTC 1 cut(s) 714
Eco53kI GAGCTC 1 cut(s) 365
EcoICRI GAGCTC 1 cut(s) 365
EcoNI CCTNNNNNAGG 1 cut(s) 125
EcoO109I RGGNCCY 2 cut(s) 118, 203
EcoT14I CCWWGG 2 cut(s) 300, 724
EcoT38I GRGCYC 1 cut(s) 367
ErhI CCWWGG 2 cut(s) 300, 724
FaeI CATG 4 cut(s) 196, 254, 535, 550
FaiI YATR 9 cut(s) 164, 194, 252, 275, 447, 533, 548, 587, 753
FalI AAGNNNNNCTT 2 cut(s) 548, 580
FatI CATG 4 cut(s) 192, 250, 531, 546
FbaI TGATCA 1 cut(s) 592
Fnu4HI GCNGC 5 cut(s) 36, 450, 469, 684, 748
FokI GGATG 3 cut(s) 21, 94, 278
FriOI GRGCYC 1 cut(s) 367
Fsp4HI GCNGC 5 cut(s) 36, 450, 469, 684, 748
FspBI CTAG 1 cut(s) 122
GlaI GCGC 1 cut(s) 154
GluI GCNGC 5 cut(s) 36, 450, 469, 684, 748
HaeIII GGCC 3 cut(s) 119, 205, 378
HapII CCGG 2 cut(s) 379, 717
HgaI GACGC 1 cut(s) 51
HhaI GCGC 1 cut(s) 155
Hin1II CATG 4 cut(s) 196, 254, 535, 550
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HinfI GANTC 6 cut(s) 50, 247, 269, 290, 475, 513
HpaII CCGG 2 cut(s) 379, 717
Hpy166II GTNNAC 5 cut(s) 103, 385, 394, 403, 757
Hpy188I TCNGA 7 cut(s) 55, 72, 210, 610, 649, 700, 737
Hpy188III TCNNGA 6 cut(s) 312, 440, 485, 510, 565, 678
Hpy8I GTNNAC 5 cut(s) 103, 385, 394, 403, 757
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 3 cut(s) 121, 222, 335
HpyCH4III ACNGT 4 cut(s) 145, 349, 389, 421
HpyCH4IV ACGT 2 cut(s) 99, 561
HpyCH4V TGCA 5 cut(s) 4, 176, 254, 502, 686
HpyF3I CTNAG 1 cut(s) 602
HpySE526I ACGT 2 cut(s) 99, 561
Hsp92II CATG 4 cut(s) 196, 254, 535, 550
HspAI GCGC 1 cut(s) 153
Ksp22I TGATCA 1 cut(s) 592
Kzo9I GATC 4 cut(s) 424, 436, 592, 732
LmnI GCTCC 2 cut(s) 72, 362
LpnPI CCDG 6 cut(s) 101, 210, 392, 498, 627, 730
Lsp1109I GCAGC 2 cut(s) 455, 670
LweI GCATC 3 cut(s) 4, 22, 339
MaeI CTAG 1 cut(s) 122
MaeII ACGT 2 cut(s) 99, 561
MalI GATC 4 cut(s) 426, 438, 594, 734
MboI GATC 4 cut(s) 424, 436, 592, 732
MboII GAAGA 1 cut(s) 649
MflI RGATCY 1 cut(s) 436
MhlI GDGCHC 2 cut(s) 309, 367
MluCI AATT 5 cut(s) 88, 480, 588, 671, 687
MlyI GAGTC 4 cut(s) 59, 256, 278, 469
MmeI TCCRAC 3 cut(s) 50, 452, 678
MnlI CCTC 4 cut(s) 147, 194, 216, 467
MseI TTAA 1 cut(s) 93
MslI CAYNNNNRTG 1 cut(s) 191
MspI CCGG 2 cut(s) 379, 717
MspR9I CCNGG 1 cut(s) 380
MvnI CGCG 1 cut(s) 522
NciI CCSGG 1 cut(s) 380
NdeII GATC 4 cut(s) 424, 436, 592, 732
NlaIII CATG 4 cut(s) 196, 254, 535, 550
NlaIV GGNNCC 1 cut(s) 438
NspI RCATGY 1 cut(s) 550
PciI ACATGT 1 cut(s) 546
PfeI GAWTC 2 cut(s) 290, 513
PkrI GCNGC 5 cut(s) 37, 451, 470, 685, 749
PleI GAGTC 4 cut(s) 58, 255, 277, 469
PpsI GAGTC 4 cut(s) 58, 255, 277, 469
Ppu21I YACGTR 1 cut(s) 100
PscI ACATGT 1 cut(s) 546
PsiI TTATAA 1 cut(s) 164
Psp124BI GAGCTC 1 cut(s) 367
PspN4I GGNNCC 1 cut(s) 438
PspPI GGNCC 3 cut(s) 118, 203, 376
PstI CTGCAG 1 cut(s) 504
PsuI RGATCY 1 cut(s) 436
RsaI GTAC 3 cut(s) 98, 455, 551
RsaNI GTAC 3 cut(s) 97, 454, 550
RseI CAYNNNNRTG 1 cut(s) 191
SacI GAGCTC 1 cut(s) 367
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 5 cut(s) 36, 450, 469, 684, 748
Sau3AI GATC 4 cut(s) 424, 436, 592, 732
Sau96I GGNCC 3 cut(s) 118, 203, 376
SchI GAGTC 4 cut(s) 59, 256, 278, 469
ScrFI CCNGG 1 cut(s) 380
SduI GDGCHC 2 cut(s) 309, 367
SetI ASST 7 cut(s) 77, 102, 367, 399, 459, 564, 685
SfaNI GCATC 3 cut(s) 4, 22, 339
SfcI CTRYAG 1 cut(s) 500
SmiMI CAYNNNNRTG 1 cut(s) 191
Sse9I AATT 5 cut(s) 88, 480, 588, 671, 687
SsiI CCGC 4 cut(s) 35, 449, 520, 748
SspMI CTAG 1 cut(s) 122
SstI GAGCTC 1 cut(s) 367
StyD4I CCNGG 1 cut(s) 378
StyI CCWWGG 2 cut(s) 300, 724
TaaI ACNGT 4 cut(s) 145, 349, 389, 421
TaiI ACGT 2 cut(s) 102, 564
TaqI TCGA 5 cut(s) 313, 323, 333, 516, 677
TasI AATT 5 cut(s) 88, 480, 588, 671, 687
TatI WGTACW 1 cut(s) 549
TauI GCSGC 3 cut(s) 38, 452, 750
TfiI GAWTC 2 cut(s) 290, 513
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 2 cut(s) 392, 504
TseI GCWGC 2 cut(s) 468, 683
TspDTI ATGAA 1 cut(s) 233
TspGWI ACGGA 1 cut(s) 361
TspRI CASTG 2 cut(s) 392, 504
XagI CCTNNNNNAGG 1 cut(s) 125
XapI RAATTY 1 cut(s) 88
XceI RCATGY 1 cut(s) 550
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.