Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0014364

Physical Location & Seq

Genomic Coordinates Forward (+)

34796354 .. 34799947

Gene Structure 3594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00412160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCTTCCTATAAATATAAGCAGCACTCTTTGGTTTTAAGCTTCGTGATCAAGTTATTTCTGTTGCTCTTGCAATTTCAAGTGGGTATAAGTGAGCTGCAACTGAACTATTATTCCCAGAGTTGTCCTAAAGCTGAAGAAATCATCAAGCAAGAGGTCACTAACCTTTACGAGGAACATGGAAATACCGCCGTCTCCTGGATCAGAAATCTCTTCCATGATTGCATTGTTGAGGGATGTGATGCGTCTCTGTTGTTAGAGGCCGCAGACGGCATGGAGTCAGAGATAGCGTCGGATCGGAGCTTTGGGATGAGAAATTTTAAGTACGTGAACACCATCAAACAGGCCCTAGAGAAGGAATGTCCTCTTACAGTTTCTTGCGCTGATGTTATAACTCTTTCTGCAAGAGATGGCATTGTCATGCTAGGAGGGCCTCGGATTGAAATGAAAACAGGAAGGAAAGACAGCAAGGAGAGTCATGCAAGAGTGGTGGATGAGTCTATACCAAATCACAATGATTCCATCTCCTTGGTGCTCTCTCGATTTCAATCGATTGGCATCGATGTTGAAGGAACAGTTGCCCTTTTAGGAGCTCACTCCGTGGGCCGGGTTCACTGTGTGAACCTTGTTCACAGACTTTACCCTACTGTTGATCCAACTTTGGATCCCGACCATGCGGCGTACCTCAAAGTTCGCTGCCCGACTCCAATTCCTGACCCGAAAGCAGTGCAGTATTCAAGATTCGACCGCGAAACACCCATGATTTTGGATAACATGTACTACAAGAACGTCTTGAATCACAAGGGTTTGCTTATAATTGATCAACAAGTGAGTTCTGACCCAGAGACATTGCCTTTTGTGGAGAAGATGGCTTCCGATAATGGATACTTCTACGAGCAATTTTCGAGAGCTGCAATTCTTTTGTCGGAGAACAATCCACTTACCGGAGACCAAGGAGAGATCAGAAAGGATTGCCGCTATGTGAACCGCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

331

Amino Acids

37.27

Weight (kDa)

5.61

Isoelectric Point (pI)

35.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	49 - 293	3.1e-69	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37130 AT2G37130
fragaria_vesca	FvH4_6g15580
malus_domestica	MD04G1101700.v1.1
prunus_persica	Prupe.6G239400_v2.0.a1 Prupe.6G239400_v2.0.a1
pyrus_communis	pycom04g09720
rosa_chinensis	RchiOBHm_Chr3g0469141
rosa_laevigata	RLG00000024370
rosa_multiflora	Rmu_sc0000302.1_g000012
rosa_roxburghii	Rroxscaffold_6G00412160
rosa_rugosa	Rorug03G0100000 Rorug03G0100000
rosa_samantha	Rh3AG149100 Rh3BG172300 Rh3DG203300
rosa_wichuraiana	Rw3G014060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	392, 815
AccII	CGCG	1 cut(s)	750
AciI	CCGC	6 cut(s)	189, 264, 677, 748, 976, 988
AclWI	GGATC	5 cut(s)	209, 303, 647, 659, 672
AcsI	RAATTY	1 cut(s)	316
AcuI	CTGAAG	1 cut(s)	156
AdeI	CACNNNGTG	2 cut(s)	601, 619
AfaI	GTAC	3 cut(s)	326, 683, 779
AfiI	CCNNNNNNNGG	5 cut(s)	172, 198, 355, 606, 944
AflIII	ACRYGT	1 cut(s)	774
AgsI	TTSAA	6 cut(s)	80, 443, 548, 569, 738, 796
AjnI	CCWGG	1 cut(s)	197
AloI	GAACNNNNNNTCC	2 cut(s)	98, 130
AluBI	AGCT	6 cut(s)	42, 97, 134, 303, 593, 911
AluI	AGCT	6 cut(s)	42, 97, 134, 303, 593, 911
Alw21I	GWGCWC	2 cut(s)	537, 595
Alw26I	GTCTC	4 cut(s)	199, 252, 839, 942
AlwI	GGATC	5 cut(s)	209, 303, 647, 659, 672
AoxI	GGCC	4 cut(s)	261, 345, 431, 604
ApeKI	GCWGC	4 cut(s)	22, 97, 696, 911
ApoI	RAATTY	1 cut(s)	316
AspLEI	GCGC	1 cut(s)	383
AspS9I	GGNCC	3 cut(s)	346, 431, 604
AsuC2I	CCSGG	1 cut(s)	608
BamHI	GGATCC	1 cut(s)	664
BanII	GRGCYC	1 cut(s)	595
Bbv12I	GWGCWC	2 cut(s)	537, 595
BbvI	GCAGC	4 cut(s)	34, 84, 683, 898
BccI	CCATC	4 cut(s)	344, 404, 530, 862
BceAI	ACGGC	2 cut(s)	176, 286
BcgI	CGANNNNNNTGC	2 cut(s)	709, 743
BciT130I	CCWGG	1 cut(s)	199
BciVI	GTATCC	1 cut(s)	878
BclI	TGATCA	2 cut(s)	48, 820
BcnI	CCSGG	1 cut(s)	608
BcoDI	GTCTC	4 cut(s)	199, 252, 839, 942
BfaI	CTAG	2 cut(s)	350, 425
BfuI	GTATCC	1 cut(s)	878
BisI	GCNGC	7 cut(s)	23, 98, 264, 678, 697, 912, 976
BlsI	GCNGC	7 cut(s)	24, 99, 265, 679, 698, 913, 977
Bme1390I	CCNGG	2 cut(s)	199, 608
BmgT120I	GGNCC	3 cut(s)	346, 431, 604
BmiI	GGNNCC	1 cut(s)	666
BmrFI	CCNGG	2 cut(s)	199, 608
BmsI	GCATC	2 cut(s)	232, 567
BpuMI	CCSGG	1 cut(s)	608
Bsa29I	ATCGAT	2 cut(s)	551, 561
BsaAI	YACGTR	1 cut(s)	328
BsaBI	GATNNNNATC	2 cut(s)	547, 557
BsaI	GGTCTC	1 cut(s)	942
BsaJI	CCNNGG	4 cut(s)	434, 528, 600, 952
BsaWI	WCCGGW	1 cut(s)	944
Bsc4I	CCNNNNNNNGG	5 cut(s)	172, 198, 355, 606, 944
Bse3DI	GCAATG	1 cut(s)	848
Bse8I	GATNNNNATC	2 cut(s)	547, 557
BseBI	CCWGG	1 cut(s)	199
BseCI	ATCGAT	2 cut(s)	551, 561
BseDI	CCNNGG	4 cut(s)	434, 528, 600, 952
BseGI	GGATG	3 cut(s)	242, 315, 499
BseJI	GATNNNNATC	2 cut(s)	547, 557
BseLI	CCNNNNNNNGG	5 cut(s)	172, 198, 355, 606, 944
BseMI	GCAATG	1 cut(s)	848
BseXI	GCAGC	4 cut(s)	34, 84, 683, 898
BsgI	GTGCAG	1 cut(s)	749
Bsh1236I	CGCG	1 cut(s)	750
Bsh1285I	CGRYCG	1 cut(s)	748
BshFI	GGCC	4 cut(s)	263, 347, 433, 606
BshVI	ATCGAT	2 cut(s)	551, 561
BsiEI	CGRYCG	1 cut(s)	748
BsiHKAI	GWGCWC	2 cut(s)	537, 595
BsiSI	CCGG	2 cut(s)	607, 945
BslI	CCNNNNNNNGG	5 cut(s)	172, 198, 355, 606, 944
BsmAI	GTCTC	4 cut(s)	199, 252, 839, 942
BsmBI	CGTCTC	2 cut(s)	199, 252
BsnI	GGCC	4 cut(s)	263, 347, 433, 606
Bso31I	GGTCTC	1 cut(s)	942
Bsp1286I	GDGCHC	2 cut(s)	537, 595
Bsp143I	GATC	7 cut(s)	48, 201, 295, 652, 664, 820, 960
BspACI	CCGC	6 cut(s)	189, 264, 677, 748, 976, 988
BspANI	GGCC	4 cut(s)	263, 347, 433, 606
BspDI	ATCGAT	2 cut(s)	551, 561
BspFNI	CGCG	1 cut(s)	750
BspLI	GGNNCC	1 cut(s)	666
BspPI	GGATC	5 cut(s)	209, 303, 647, 659, 672
BspTNI	GGTCTC	1 cut(s)	942
BsrDI	GCAATG	1 cut(s)	848
BssECI	CCNNGG	4 cut(s)	434, 528, 600, 952
BssMI	GATC	7 cut(s)	48, 201, 295, 652, 664, 820, 960
BssT1I	CCWWGG	2 cut(s)	528, 952
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	4 cut(s)	373, 577, 617, 649
Bst6I	CTCTTC	1 cut(s)	218
BstBAI	YACGTR	1 cut(s)	328
BstDSI	CCRYGG	1 cut(s)	600
BstENI	CCTNNNNNAGG	2 cut(s)	170, 353
BstF5I	GGATG	3 cut(s)	242, 315, 499
BstFNI	CGCG	1 cut(s)	750
BstHHI	GCGC	1 cut(s)	383
BstKTI	GATC	7 cut(s)	51, 204, 298, 655, 667, 823, 963
BstMAI	GTCTC	4 cut(s)	199, 252, 839, 942
BstMBI	GATC	7 cut(s)	48, 201, 295, 652, 664, 820, 960
BstMCI	CGRYCG	1 cut(s)	748
BstMWI	GCNNNNNNNGC	1 cut(s)	430
BstNI	CCWGG	1 cut(s)	199
BstNSI	RCATGY	1 cut(s)	778
BstSCI	CCNGG	2 cut(s)	197, 606
BstUI	CGCG	1 cut(s)	750
BstV1I	GCAGC	4 cut(s)	34, 84, 683, 898
BstX2I	RGATCY	1 cut(s)	664
BstXI	CCANNNNNNTGG	2 cut(s)	529, 766
BstYI	RGATCY	1 cut(s)	664
Bsu15I	ATCGAT	2 cut(s)	551, 561
BsuI	GTATCC	1 cut(s)	878
BsuRI	GGCC	4 cut(s)	263, 347, 433, 606
BsuTUI	ATCGAT	2 cut(s)	551, 561
BtgI	CCRYGG	1 cut(s)	600
BtsCI	GGATG	3 cut(s)	242, 315, 499
BtsI	GCAGTG	1 cut(s)	732
BtsIMutI	CAGTG	2 cut(s)	613, 732
CfoI	GCGC	1 cut(s)	383
Cfr13I	GGNCC	3 cut(s)	346, 431, 604
ClaI	ATCGAT	2 cut(s)	551, 561
CseI	GACGC	2 cut(s)	234, 279
Csp6I	GTAC	3 cut(s)	325, 682, 778
CspCI	CAANNNNNGTGG	2 cut(s)	471, 506
CviAII	CATG	8 cut(s)	179, 218, 274, 421, 479, 674, 760, 775
CviQI	GTAC	3 cut(s)	325, 682, 778
DpnI	GATC	7 cut(s)	50, 203, 297, 654, 666, 822, 962
DpnII	GATC	7 cut(s)	48, 201, 295, 652, 664, 820, 960
DraIII	CACNNNGTG	2 cut(s)	601, 619
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Ecl136II	GAGCTC	1 cut(s)	593
Eco130I	CCWWGG	2 cut(s)	528, 952
Eco24I	GRGCYC	1 cut(s)	595
Eco31I	GGTCTC	1 cut(s)	942
Eco53kI	GAGCTC	1 cut(s)	593
Eco57I	CTGAAG	1 cut(s)	156
EcoICRI	GAGCTC	1 cut(s)	593
EcoNI	CCTNNNNNAGG	2 cut(s)	170, 353
EcoO109I	RGGNCCY	2 cut(s)	346, 431
EcoRII	CCWGG	1 cut(s)	197
EcoT14I	CCWWGG	2 cut(s)	528, 952
EcoT38I	GRGCYC	1 cut(s)	595
ErhI	CCWWGG	2 cut(s)	528, 952
Esp3I	CGTCTC	2 cut(s)	199, 252
FaeI	CATG	8 cut(s)	182, 221, 277, 424, 482, 677, 763, 778
FalI	AAGNNNNNCTT	2 cut(s)	776, 808
FatI	CATG	8 cut(s)	178, 217, 273, 420, 478, 673, 759, 774
FbaI	TGATCA	2 cut(s)	48, 820
Fnu4HI	GCNGC	7 cut(s)	23, 98, 264, 678, 697, 912, 976
FokI	GGATG	3 cut(s)	249, 322, 506
FriOI	GRGCYC	1 cut(s)	595
Fsp4HI	GCNGC	7 cut(s)	23, 98, 264, 678, 697, 912, 976
FspBI	CTAG	2 cut(s)	350, 425
GlaI	GCGC	1 cut(s)	382
GluI	GCNGC	7 cut(s)	23, 98, 264, 678, 697, 912, 976
HaeIII	GGCC	4 cut(s)	263, 347, 433, 606
HapII	CCGG	2 cut(s)	607, 945
HgaI	GACGC	2 cut(s)	234, 279
HhaI	GCGC	1 cut(s)	383
Hin1II	CATG	8 cut(s)	182, 221, 277, 424, 482, 677, 763, 778
Hin6I	GCGC	1 cut(s)	381
HinP1I	GCGC	1 cut(s)	381
HindIII	AAGCTT	1 cut(s)	40
HinfI	GANTC	7 cut(s)	278, 475, 497, 518, 703, 741, 796
HpaII	CCGG	2 cut(s)	607, 945
Hpy166II	GTNNAC	5 cut(s)	331, 613, 622, 631, 985
Hpy188I	TCNGA	9 cut(s)	206, 283, 295, 300, 438, 838, 877, 928, 965
Hpy188III	TCNNGA	7 cut(s)	46, 540, 668, 713, 738, 793, 906
Hpy8I	GTNNAC	5 cut(s)	331, 613, 622, 631, 985
Hpy99I	CGWCG	1 cut(s)	295
HpyAV	CCTTC	3 cut(s)	349, 450, 563
HpyCH4III	ACNGT	4 cut(s)	373, 577, 617, 649
HpyCH4IV	ACGT	2 cut(s)	327, 789
HpyCH4V	TGCA	7 cut(s)	73, 100, 225, 404, 482, 730, 914
HpyF10VI	GCNNNNNNNGC	1 cut(s)	430
HpySE526I	ACGT	2 cut(s)	327, 789
Hsp92II	CATG	8 cut(s)	182, 221, 277, 424, 482, 677, 763, 778
HspAI	GCGC	1 cut(s)	381
Ksp22I	TGATCA	2 cut(s)	48, 820
Kzo9I	GATC	7 cut(s)	48, 201, 295, 652, 664, 820, 960
LmnI	GCTCC	2 cut(s)	300, 590
LpnPI	CCDG	9 cut(s)	131, 184, 211, 329, 438, 620, 726, 855, 958
Lsp1109I	GCAGC	4 cut(s)	34, 84, 683, 898
LweI	GCATC	2 cut(s)	232, 567
MaeI	CTAG	2 cut(s)	350, 425
MaeII	ACGT	2 cut(s)	327, 789
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	7 cut(s)	50, 203, 297, 654, 666, 822, 962
MboI	GATC	7 cut(s)	48, 201, 295, 652, 664, 820, 960
MboII	GAAGA	3 cut(s)	149, 205, 877
MflI	RGATCY	1 cut(s)	664
MhlI	GDGCHC	2 cut(s)	537, 595
MluCI	AATT	6 cut(s)	74, 316, 708, 816, 899, 915
MlyI	GAGTC	4 cut(s)	287, 484, 506, 697
MmeI	TCCRAC	3 cut(s)	273, 680, 906
MnlI	CCTC	8 cut(s)	148, 166, 226, 253, 375, 422, 444, 695
MseI	TTAA	2 cut(s)	38, 321
MslI	CAYNNNNRTG	1 cut(s)	419
MspI	CCGG	2 cut(s)	607, 945
MspR9I	CCNGG	2 cut(s)	199, 608
MvaI	CCWGG	1 cut(s)	199
MvnI	CGCG	1 cut(s)	750
MwoI	GCNNNNNNNGC	1 cut(s)	430
NciI	CCSGG	1 cut(s)	608
NdeII	GATC	7 cut(s)	48, 201, 295, 652, 664, 820, 960
NlaIII	CATG	8 cut(s)	182, 221, 277, 424, 482, 677, 763, 778
NlaIV	GGNNCC	1 cut(s)	666
NmuCI	GTSAC	1 cut(s)	157
NspI	RCATGY	1 cut(s)	778
PciI	ACATGT	1 cut(s)	774
PfeI	GAWTC	3 cut(s)	518, 741, 796
PfoI	TCCNGGA	1 cut(s)	197
PkrI	GCNGC	7 cut(s)	24, 99, 265, 679, 698, 913, 977
PleI	GAGTC	4 cut(s)	286, 483, 505, 697
PpsI	GAGTC	4 cut(s)	286, 483, 505, 697
Ppu21I	YACGTR	1 cut(s)	328
PscI	ACATGT	1 cut(s)	774
PsiI	TTATAA	2 cut(s)	392, 815
Psp124BI	GAGCTC	1 cut(s)	595
Psp6I	CCWGG	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	666
PspPI	GGNCC	3 cut(s)	346, 431, 604
PsuI	RGATCY	1 cut(s)	664
RsaI	GTAC	3 cut(s)	326, 683, 779
RsaNI	GTAC	3 cut(s)	325, 682, 778
RseI	CAYNNNNRTG	1 cut(s)	419
SacI	GAGCTC	1 cut(s)	595
SaqAI	TTAA	2 cut(s)	38, 321
SatI	GCNGC	7 cut(s)	23, 98, 264, 678, 697, 912, 976
Sau3AI	GATC	7 cut(s)	48, 201, 295, 652, 664, 820, 960
Sau96I	GGNCC	3 cut(s)	346, 431, 604
SchI	GAGTC	4 cut(s)	287, 484, 506, 697
ScrFI	CCNGG	2 cut(s)	199, 608
SduI	GDGCHC	2 cut(s)	537, 595
SfaNI	GCATC	2 cut(s)	232, 567
SmiMI	CAYNNNNRTG	1 cut(s)	419
Sse9I	AATT	6 cut(s)	74, 316, 708, 816, 899, 915
SsiI	CCGC	6 cut(s)	189, 264, 677, 748, 976, 988
SspMI	CTAG	2 cut(s)	350, 425
SstI	GAGCTC	1 cut(s)	595
StyD4I	CCNGG	2 cut(s)	197, 606
StyI	CCWWGG	2 cut(s)	528, 952
TaaI	ACNGT	4 cut(s)	373, 577, 617, 649
TaiI	ACGT	2 cut(s)	330, 792
TaqI	TCGA	5 cut(s)	541, 551, 561, 744, 905
TasI	AATT	6 cut(s)	74, 316, 708, 816, 899, 915
TatI	WGTACW	1 cut(s)	777
TauI	GCSGC	3 cut(s)	266, 680, 978
TfiI	GAWTC	3 cut(s)	518, 741, 796
Tru1I	TTAA	2 cut(s)	38, 321
Tru9I	TTAA	2 cut(s)	38, 321
TscAI	CASTG	2 cut(s)	620, 732
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	4 cut(s)	22, 97, 696, 911
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	461
TspGWI	ACGGA	1 cut(s)	589
TspRI	CASTG	2 cut(s)	620, 732
XagI	CCTNNNNNAGG	2 cut(s)	170, 353
XapI	RAATTY	1 cut(s)	316
XceI	RCATGY	1 cut(s)	778
XspI	CTAG	2 cut(s)	350, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.