Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0014364

Physical Location & Seq

Genomic Coordinates Forward (+)

18814701 .. 18817577

Gene Structure 2877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1101700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCCTTCTATAAGCACCACGCTTTCTCAAGCTTCTTGATGTTTTTGTTGTTTCCATTGCTCTTGCAATTTCAGTTTGGTAAAAGTGAGCTGCAACTTAACTATTACTCCAATAGTTGCCCAAAAGCTGAAGAAGTCATCAAGCAAGAGGTCACCAAGCTATACCATGAACATGGGAATACAGCCGTTTCTTGGTTAAGAAATCTCTTTCACGATTGCGTTGTTCAGGGATGTGATGCCTCTCTATTGCTAGAGAGTGTGACTGGCATAGAGTCAGAGAAGGCATCGGGGAGGAGCTTCGGGATGAGAAATTTCAAGTACGTAAACACAATCAAAAAGGCCCTTGAGGACGAATGCCCTTCCACAGTTTCTTGTGCTGATGTTGTTGCTCTTTCTGCAAGAGATGGAATTGTCATGTTAGGAGGGCCACGCATTGAGATGAAGACGGGAAGGAAGGACAGCAAGGAGAGTTATGCAAGTGTGGTGGAAGAGTTTATTCCTAATCACAATGATTCCATATCTTCAGTGCTTTCTCGCTTTCAGTCCATCGGCATCGATGCTGAAGGAACAGTGGCCATTTTAGCTCACTCTGTGGGTCGAGTCCACTGTGTGAACCTGGTAGATAGGCTCTACCCAACCGTGGATCCAACCCTAGACCCTGACCATGCCGAATACCTCAAAGGTCGGTGCCCAACTCCAACCCCAGACCCAAAAGCAGTTCTCTACGCAAGGAACGACCGTGAAACACCCATGCTTCTCGACAACTATTATTACAAGAACCTGCTGAGCCACAAGGGTCTGCTCACCGTCGACCAAGAACTAGCTTCTGACCCAGCTACATTGCCCTTTGTGGAAAAGATGGCTGCCGATAACGGCTACTTCAGCGAGCAGTTTTCTAGGGCTGTCCTTCTTTTGTCTGAGAACAACCCGCTTACTGGAGACCAAGGAGAAGTTAGAAAGGATTGCCGATATGTGAATGCAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

329

Amino Acids

36.62

Weight (kDa)

5.6

Isoelectric Point (pI)

36.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	47 - 290	1.8e-68	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37130 AT2G37130
fragaria_vesca	FvH4_6g15580
malus_domestica	MD04G1101700.v1.1
prunus_persica	Prupe.6G239400_v2.0.a1 Prupe.6G239400_v2.0.a1
pyrus_communis	pycom04g09720
rosa_chinensis	RchiOBHm_Chr3g0469141
rosa_laevigata	RLG00000024370
rosa_multiflora	Rmu_sc0000302.1_g000012
rosa_roxburghii	Rroxscaffold_6G00412160
rosa_rugosa	Rorug03G0100000 Rorug03G0100000
rosa_samantha	Rh3AG149100 Rh3BG172300 Rh3DG203300
rosa_wichuraiana	Rw3G014060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	789
AccB1I	GGYRCC	1 cut(s)	687
AccI	GTMKAC	1 cut(s)	810
AciI	CCGC	1 cut(s)	929
AclWI	GGATC	2 cut(s)	638, 651
AcoI	YGGCCR	1 cut(s)	573
AcsI	RAATTY	1 cut(s)	310
AcuI	CTGAAG	4 cut(s)	150, 507, 582, 865
AdeI	CACNNNGTG	2 cut(s)	592, 610
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	3 cut(s)	192, 640, 935
AgsI	TTSAA	1 cut(s)	316
AjnI	CCWGG	1 cut(s)	615
AluBI	AGCT	8 cut(s)	33, 91, 128, 160, 297, 584, 824, 836
AluI	AGCT	8 cut(s)	33, 91, 128, 160, 297, 584, 824, 836
Alw26I	GTCTC	1 cut(s)	933
AlwI	GGATC	2 cut(s)	638, 651
AoxI	GGCC	4 cut(s)	3, 339, 425, 573
ApeKI	GCWGC	2 cut(s)	91, 863
ApoI	RAATTY	1 cut(s)	310
AspS9I	GGNCC	2 cut(s)	340, 425
AsuHPI	GGTGA	2 cut(s)	145, 796
BaeGI	GKGCMC	1 cut(s)	692
BalI	TGGCCA	1 cut(s)	575
BamHI	GGATCC	1 cut(s)	643
BanI	GGYRCC	1 cut(s)	687
BbsI	GAAGAC	1 cut(s)	449
BbvI	GCAGC	2 cut(s)	78, 850
BccI	CCATC	3 cut(s)	398, 554, 853
BceAI	ACGGC	2 cut(s)	170, 889
BciT130I	CCWGG	1 cut(s)	617
BcoDI	GTCTC	1 cut(s)	933
BfaI	CTAG	4 cut(s)	251, 653, 821, 897
BfuAI	ACCTGC	1 cut(s)	789
BisI	GCNGC	2 cut(s)	92, 864
BlpI	GCTNAGC	1 cut(s)	785
BlsI	GCNGC	2 cut(s)	93, 865
Bme1390I	CCNGG	1 cut(s)	617
BmgT120I	GGNCC	2 cut(s)	340, 425
BmiI	GGNNCC	2 cut(s)	645, 689
BmrFI	CCNGG	1 cut(s)	617
BmsI	GCATC	4 cut(s)	226, 293, 547, 561
BpiI	GAAGAC	1 cut(s)	449
BpmI	CTGGAG	1 cut(s)	957
Bpu1102I	GCTNAGC	1 cut(s)	785
BpuEI	CTTGAG	2 cut(s)	13, 365
Bsa29I	ATCGAT	1 cut(s)	555
BsaAI	YACGTR	1 cut(s)	322
BsaI	GGTCTC	1 cut(s)	933
BsaJI	CCNNGG	2 cut(s)	639, 943
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	3 cut(s)	192, 640, 935
Bse1I	ACTGG	2 cut(s)	268, 940
Bse3DI	GCAATG	2 cut(s)	56, 839
BseBI	CCWGG	1 cut(s)	617
BseCI	ATCGAT	1 cut(s)	555
BseDI	CCNNGG	2 cut(s)	639, 943
BseGI	GGATG	2 cut(s)	236, 309
BseLI	CCNNNNNNNGG	3 cut(s)	192, 640, 935
BseMI	GCAATG	2 cut(s)	56, 839
BseMII	CTCAG	2 cut(s)	776, 909
BseNI	ACTGG	2 cut(s)	268, 940
BseRI	GAGGAG	1 cut(s)	307
BseSI	GKGCMC	1 cut(s)	692
BseXI	GCAGC	2 cut(s)	78, 850
BseYI	CCCAGC	1 cut(s)	832
Bsh1285I	CGRYCG	1 cut(s)	739
BshFI	GGCC	4 cut(s)	5, 341, 427, 575
BshNI	GGYRCC	1 cut(s)	687
BshVI	ATCGAT	1 cut(s)	555
BsiEI	CGRYCG	1 cut(s)	739
BslI	CCNNNNNNNGG	3 cut(s)	192, 640, 935
BsmAI	GTCTC	1 cut(s)	933
BsmI	GAATGC	2 cut(s)	359, 982
BsnI	GGCC	4 cut(s)	5, 341, 427, 575
Bso31I	GGTCTC	1 cut(s)	933
Bsp1286I	GDGCHC	1 cut(s)	692
Bsp143I	GATC	1 cut(s)	643
Bsp1720I	GCTNAGC	1 cut(s)	785
BspACI	CCGC	1 cut(s)	929
BspANI	GGCC	4 cut(s)	5, 341, 427, 575
BspCNI	CTCAG	2 cut(s)	777, 910
BspDI	ATCGAT	1 cut(s)	555
BspLI	GGNNCC	2 cut(s)	645, 689
BspMI	ACCTGC	1 cut(s)	789
BspPI	GGATC	2 cut(s)	638, 651
BspT107I	GGYRCC	1 cut(s)	687
BspTNI	GGTCTC	1 cut(s)	933
BsrDI	GCAATG	2 cut(s)	56, 839
BsrI	ACTGG	2 cut(s)	268, 940
BssECI	CCNNGG	2 cut(s)	639, 943
BssMI	GATC	1 cut(s)	643
BssT1I	CCWWGG	1 cut(s)	943
Bst2UI	CCWGG	1 cut(s)	617
Bst4CI	ACNGT	6 cut(s)	367, 571, 608, 640, 740, 808
Bst6I	CTCTTC	1 cut(s)	483
BstBAI	YACGTR	1 cut(s)	322
BstC8I	GCNNGC	1 cut(s)	887
BstDEI	CTNAG	2 cut(s)	785, 918
BstDSI	CCRYGG	1 cut(s)	639
BstEII	GGTNACC	1 cut(s)	151
BstF5I	GGATG	2 cut(s)	236, 309
BstKTI	GATC	1 cut(s)	646
BstMAI	GTCTC	1 cut(s)	933
BstMBI	GATC	1 cut(s)	643
BstMCI	CGRYCG	1 cut(s)	739
BstMWI	GCNNNNNNNGC	3 cut(s)	395, 581, 882
BstNI	CCWGG	1 cut(s)	617
BstPI	GGTNACC	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	615
BstSLI	GKGCMC	1 cut(s)	692
BstSNI	TACGTA	1 cut(s)	322
BstV1I	GCAGC	2 cut(s)	78, 850
BstV2I	GAAGAC	1 cut(s)	449
BstX2I	RGATCY	1 cut(s)	643
BstXI	CCANNNNNNTGG	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	643
Bsu15I	ATCGAT	1 cut(s)	555
BsuRI	GGCC	4 cut(s)	5, 341, 427, 575
BsuTUI	ATCGAT	1 cut(s)	555
BtgI	CCRYGG	1 cut(s)	639
BtsCI	GGATG	2 cut(s)	236, 309
BtsIMutI	CAGTG	3 cut(s)	531, 576, 604
BveI	ACCTGC	1 cut(s)	789
Cac8I	GCNNGC	1 cut(s)	887
Cfr13I	GGNCC	2 cut(s)	340, 425
ClaI	ATCGAT	1 cut(s)	555
CsiI	ACCWGGT	1 cut(s)	615
Csp6I	GTAC	1 cut(s)	319
CspCI	CAANNNNNGTGG	2 cut(s)	465, 500
CviAII	CATG	5 cut(s)	167, 173, 415, 665, 751
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	2 cut(s)	785, 918
DpnI	GATC	1 cut(s)	645
DpnII	GATC	1 cut(s)	643
DraIII	CACNNNGTG	2 cut(s)	592, 610
EaeI	YGGCCR	1 cut(s)	573
Eam1104I	CTCTTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	483
Eco105I	TACGTA	1 cut(s)	322
Eco130I	CCWWGG	1 cut(s)	943
Eco31I	GGTCTC	1 cut(s)	933
Eco57I	CTGAAG	4 cut(s)	150, 507, 582, 865
Eco91I	GGTNACC	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	340
EcoO65I	GGTNACC	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	615
EcoT14I	CCWWGG	1 cut(s)	943
ErhI	CCWWGG	1 cut(s)	943
FaeI	CATG	5 cut(s)	170, 176, 418, 668, 754
FatI	CATG	5 cut(s)	166, 172, 414, 664, 750
FauI	CCCGC	1 cut(s)	936
FblI	GTMKAC	1 cut(s)	810
Fnu4HI	GCNGC	2 cut(s)	92, 864
FokI	GGATG	2 cut(s)	243, 316
Fsp4HI	GCNGC	2 cut(s)	92, 864
FspBI	CTAG	4 cut(s)	251, 653, 821, 897
GluI	GCNGC	2 cut(s)	92, 864
GsaI	CCCAGC	1 cut(s)	836
GsuI	CTGGAG	1 cut(s)	957
HaeIII	GGCC	4 cut(s)	5, 341, 427, 575
Hin1II	CATG	5 cut(s)	170, 176, 418, 668, 754
HincII	GTYRAC	1 cut(s)	811
HindII	GTYRAC	1 cut(s)	811
HindIII	AAGCTT	1 cut(s)	31
HinfI	GANTC	3 cut(s)	272, 512, 600
HphI	GGTGA	2 cut(s)	145, 796
Hpy166II	GTNNAC	4 cut(s)	325, 604, 613, 811
Hpy188I	TCNGA	3 cut(s)	277, 829, 919
Hpy188III	TCNNGA	4 cut(s)	37, 212, 301, 758
Hpy8I	GTNNAC	4 cut(s)	325, 604, 613, 811
Hpy99I	CGWCG	1 cut(s)	812
HpyAV	CCTTC	7 cut(s)	16, 274, 369, 444, 448, 557, 917
HpyCH4III	ACNGT	6 cut(s)	367, 571, 608, 640, 740, 808
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	5 cut(s)	67, 94, 398, 476, 980
HpyF10VI	GCNNNNNNNGC	3 cut(s)	395, 581, 882
HpyF3I	CTNAG	2 cut(s)	785, 918
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	5 cut(s)	170, 176, 418, 668, 754
Kzo9I	GATC	1 cut(s)	643
LmnI	GCTCC	1 cut(s)	294
LpnPI	CCDG	9 cut(s)	212, 249, 602, 629, 672, 717, 794, 846, 921
Lsp1109I	GCAGC	2 cut(s)	78, 850
LweI	GCATC	4 cut(s)	226, 293, 547, 561
MabI	ACCWGGT	1 cut(s)	615
MaeI	CTAG	4 cut(s)	251, 653, 821, 897
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	2 cut(s)	151, 259
MalI	GATC	1 cut(s)	645
MboI	GATC	1 cut(s)	643
MboII	GAAGA	4 cut(s)	143, 454, 500, 513
MflI	RGATCY	1 cut(s)	643
MhlI	GDGCHC	1 cut(s)	692
MlsI	TGGCCA	1 cut(s)	575
MluCI	AATT	3 cut(s)	68, 310, 408
MluNI	TGGCCA	1 cut(s)	575
MlyI	GAGTC	2 cut(s)	281, 609
MmeI	TCCRAC	2 cut(s)	671, 722
MnlI	CCTC	6 cut(s)	142, 250, 285, 340, 416, 686
Mox20I	TGGCCA	1 cut(s)	575
MscI	TGGCCA	1 cut(s)	575
MseI	TTAA	2 cut(s)	99, 197
MslI	CAYNNNNRTG	2 cut(s)	171, 437
Msp20I	TGGCCA	1 cut(s)	575
MspR9I	CCNGG	1 cut(s)	617
Mva1269I	GAATGC	2 cut(s)	359, 982
MvaI	CCWGG	1 cut(s)	617
MwoI	GCNNNNNNNGC	3 cut(s)	395, 581, 882
NdeII	GATC	1 cut(s)	643
NlaIII	CATG	5 cut(s)	170, 176, 418, 668, 754
NlaIV	GGNNCC	2 cut(s)	645, 689
NmuCI	GTSAC	2 cut(s)	151, 259
PcsI	WCGNNNNNNNCGW	1 cut(s)	732
PctI	GAATGC	2 cut(s)	359, 982
PfeI	GAWTC	1 cut(s)	512
PkrI	GCNGC	2 cut(s)	93, 865
PleI	GAGTC	2 cut(s)	280, 608
PpsI	GAGTC	2 cut(s)	280, 608
Ppu21I	YACGTR	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	615
PspEI	GGTNACC	1 cut(s)	151
PspFI	CCCAGC	1 cut(s)	832
PspGI	CCWGG	1 cut(s)	615
PspN4I	GGNNCC	2 cut(s)	645, 689
PspPI	GGNCC	2 cut(s)	340, 425
PsuI	RGATCY	1 cut(s)	643
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
RseI	CAYNNNNRTG	2 cut(s)	171, 437
SalI	GTCGAC	1 cut(s)	809
SaqAI	TTAA	2 cut(s)	99, 197
SatI	GCNGC	2 cut(s)	92, 864
Sau3AI	GATC	1 cut(s)	643
Sau96I	GGNCC	2 cut(s)	340, 425
SchI	GAGTC	2 cut(s)	281, 609
ScrFI	CCNGG	1 cut(s)	617
SduI	GDGCHC	1 cut(s)	692
SexAI	ACCWGGT	1 cut(s)	615
SfaNI	GCATC	4 cut(s)	226, 293, 547, 561
SmiMI	CAYNNNNRTG	2 cut(s)	171, 437
SmlI	CTYRAG	2 cut(s)	28, 344
SmoI	CTYRAG	2 cut(s)	28, 344
SnaBI	TACGTA	1 cut(s)	322
Sse9I	AATT	3 cut(s)	68, 310, 408
SsiI	CCGC	1 cut(s)	929
SspMI	CTAG	4 cut(s)	251, 653, 821, 897
StyD4I	CCNGG	1 cut(s)	615
StyI	CCWWGG	1 cut(s)	943
TaaI	ACNGT	6 cut(s)	367, 571, 608, 640, 740, 808
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	4 cut(s)	555, 598, 759, 810
TasI	AATT	3 cut(s)	68, 310, 408
TfiI	GAWTC	1 cut(s)	512
Tru1I	TTAA	2 cut(s)	99, 197
Tru9I	TTAA	2 cut(s)	99, 197
TscAI	CASTG	3 cut(s)	531, 576, 611
TseFI	GTSAC	2 cut(s)	151, 259
TseI	GCWGC	2 cut(s)	91, 863
Tsp45I	GTSAC	2 cut(s)	151, 259
TspDTI	ATGAA	2 cut(s)	183, 455
TspRI	CASTG	3 cut(s)	531, 576, 611
XapI	RAATTY	1 cut(s)	310
XmiI	GTMKAC	1 cut(s)	810
XspI	CTAG	4 cut(s)	251, 653, 821, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.