Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0014364

Physical Location & Seq

Genomic Coordinates Forward (+)

18575258 .. 18579163

Gene Structure 3906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG203300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCTTCCTATAAATATAAGCAGCACTCTTTGGTTTTAAGCTTCATGATCTCGTTATTTCTGTTGCTCTTGCAATTTCAAGTTGGTATAAGTGAGCTGCAACAGAACTATTATTCCCAGAGTTGCCCTAAAGCTGAAGAAATCATCAAGCAAGAGGTCACTAACCTTTACGAGGAACATGGAAATACCGCCGTCTCCTGGATCAGAAATCTCTTCCACGATTGCATTGTTGAGGGATGTGATGCGTCTCTGTTGTTAGAGGCGGCAGACGGGATGGAGTCAGAGAAAGCGTCGGATCGGAGCTTTGGGATGAGAAATTTTAAGTACGTGAACACTATCAAACAGGCCTTAGAGAAGGAATGTCCTCTTACAGTTTCTTGCGCTGATGTTATAACTCTTTCTGCAAGAGATGGCATTGTCATGTTAGGAGGACCTCGGATTGAAATGAAAACGGGAAGGAGAGACAGCAAGGAGAGTCATGCAGGAGTGGTGGATGAGTCTATACCTAATCACAATGATTCCATCTCCTTAGTGCTCTCTCGATTTCAATCGATTGGCATCGATGTTGAAGGCACGGTTGCCCTTTTAGGAGCTCACTCTGTGGGTCGAGTTCACTGCCTGAACCTTGTGCACAGACTCTACCCTACTGTTGATCCAACTTTGGATCCCGACTATGCTGCGTACCTCAAAGTTCGCTGCCCGATTCCAATTCCTGATCCGAAAGCAGTGCAGTATTCAAGATTCGACCGCGAAACACCCATGATTCTGGATAACATGTACTACAAGAACGTCTTGAACCACAAGGGTTTGCTCATAATCGATCAACAACTGAGTTTTGACCCAGAGACATTGCCTTTTGTGGAGAAAATGGCTTCCGATAATGGATACTTCTACGAGCAGTTTTTGAGAGCTGCAATTCTTTTGTCGGAGAACAATCCACTTACTGGAGACCAAGGAGAGATCAGAAAGGATTGCCGCTATGTGAACGGCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

331

Amino Acids

37.27

Weight (kDa)

5.33

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	49 - 293	1.6e-70	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37130 AT2G37130
fragaria_vesca	FvH4_6g15580
malus_domestica	MD04G1101700.v1.1
prunus_persica	Prupe.6G239400_v2.0.a1 Prupe.6G239400_v2.0.a1
pyrus_communis	pycom04g09720
rosa_chinensis	RchiOBHm_Chr3g0469141
rosa_laevigata	RLG00000024370
rosa_multiflora	Rmu_sc0000302.1_g000012
rosa_roxburghii	Rroxscaffold_6G00412160
rosa_rugosa	Rorug03G0100000 Rorug03G0100000
rosa_samantha	Rh3AG149100 Rh3BG172300 Rh3DG203300
rosa_wichuraiana	Rw3G014060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	392
AccB7I	CCANNNNNTGG	1 cut(s)	944
AccII	CGCG	1 cut(s)	750
AciI	CCGC	4 cut(s)	189, 263, 748, 976
AclWI	GGATC	6 cut(s)	209, 303, 647, 659, 672, 710
AcsI	RAATTY	1 cut(s)	316
AcuI	CTGAAG	1 cut(s)	156
AdeI	CACNNNGTG	1 cut(s)	601
AfaI	GTAC	3 cut(s)	326, 683, 779
AfiI	CCNNNNNNNGG	3 cut(s)	172, 198, 944
AflIII	ACRYGT	1 cut(s)	774
AgsI	TTSAA	6 cut(s)	80, 443, 548, 569, 738, 796
AjnI	CCWGG	1 cut(s)	197
AloI	GAACNNNNNNTCC	2 cut(s)	98, 130
AluBI	AGCT	6 cut(s)	42, 97, 134, 303, 593, 911
AluI	AGCT	6 cut(s)	42, 97, 134, 303, 593, 911
Alw21I	GWGCWC	3 cut(s)	537, 595, 633
Alw26I	GTCTC	5 cut(s)	199, 252, 456, 839, 942
Alw44I	GTGCAC	1 cut(s)	629
AlwI	GGATC	6 cut(s)	209, 303, 647, 659, 672, 710
AoxI	GGCC	1 cut(s)	345
ApaLI	GTGCAC	1 cut(s)	629
ApeKI	GCWGC	5 cut(s)	22, 97, 677, 696, 911
ApoI	RAATTY	1 cut(s)	316
AspLEI	GCGC	1 cut(s)	383
AspS9I	GGNCC	1 cut(s)	431
AvaII	GGWCC	1 cut(s)	431
BaeGI	GKGCMC	1 cut(s)	633
BamHI	GGATCC	1 cut(s)	664
BanII	GRGCYC	1 cut(s)	595
Bbv12I	GWGCWC	3 cut(s)	537, 595, 633
BbvI	GCAGC	5 cut(s)	34, 84, 664, 683, 898
BccI	CCATC	3 cut(s)	268, 404, 530
BceAI	ACGGC	1 cut(s)	176
BcgI	CGANNNNNNTGC	6 cut(s)	597, 631, 659, 693, 709, 743
BciT130I	CCWGG	1 cut(s)	199
BciVI	GTATCC	1 cut(s)	878
BcoDI	GTCTC	5 cut(s)	199, 252, 456, 839, 942
BfuI	GTATCC	1 cut(s)	878
BisI	GCNGC	7 cut(s)	23, 98, 264, 678, 697, 912, 976
BlsI	GCNGC	7 cut(s)	24, 99, 265, 679, 698, 913, 977
Bme1390I	CCNGG	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	431
BmiI	GGNNCC	1 cut(s)	666
BmrFI	CCNGG	1 cut(s)	199
BmsI	GCATC	2 cut(s)	232, 567
BpmI	CTGGAG	1 cut(s)	966
Bsa29I	ATCGAT	3 cut(s)	551, 561, 819
BsaAI	YACGTR	1 cut(s)	328
BsaBI	GATNNNNATC	2 cut(s)	547, 557
BsaI	GGTCTC	1 cut(s)	942
BsaJI	CCNNGG	2 cut(s)	434, 952
Bsc4I	CCNNNNNNNGG	3 cut(s)	172, 198, 944
Bse1I	ACTGG	1 cut(s)	949
Bse3DI	GCAATG	1 cut(s)	848
Bse8I	GATNNNNATC	2 cut(s)	547, 557
BseBI	CCWGG	1 cut(s)	199
BseCI	ATCGAT	3 cut(s)	551, 561, 819
BseDI	CCNNGG	2 cut(s)	434, 952
BseGI	GGATG	4 cut(s)	242, 279, 315, 499
BseJI	GATNNNNATC	2 cut(s)	547, 557
BseLI	CCNNNNNNNGG	3 cut(s)	172, 198, 944
BseMI	GCAATG	1 cut(s)	848
BseMII	CTCAG	1 cut(s)	821
BseNI	ACTGG	1 cut(s)	949
BseSI	GKGCMC	1 cut(s)	633
BseXI	GCAGC	5 cut(s)	34, 84, 664, 683, 898
BsgI	GTGCAG	1 cut(s)	749
Bsh1236I	CGCG	1 cut(s)	750
Bsh1285I	CGRYCG	1 cut(s)	748
BshFI	GGCC	1 cut(s)	347
BshVI	ATCGAT	3 cut(s)	551, 561, 819
BsiEI	CGRYCG	1 cut(s)	748
BsiHKAI	GWGCWC	3 cut(s)	537, 595, 633
BslI	CCNNNNNNNGG	3 cut(s)	172, 198, 944
BsmAI	GTCTC	5 cut(s)	199, 252, 456, 839, 942
BsmBI	CGTCTC	2 cut(s)	199, 252
BsnI	GGCC	1 cut(s)	347
Bso31I	GGTCTC	1 cut(s)	942
Bsp1286I	GDGCHC	3 cut(s)	537, 595, 633
Bsp143I	GATC	8 cut(s)	48, 201, 295, 652, 664, 715, 820, 960
BspACI	CCGC	4 cut(s)	189, 263, 748, 976
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	1 cut(s)	822
BspDI	ATCGAT	3 cut(s)	551, 561, 819
BspFNI	CGCG	1 cut(s)	750
BspHI	TCATGA	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	666
BspPI	GGATC	6 cut(s)	209, 303, 647, 659, 672, 710
BspTNI	GGTCTC	1 cut(s)	942
BsrDI	GCAATG	1 cut(s)	848
BsrI	ACTGG	1 cut(s)	949
BssECI	CCNNGG	2 cut(s)	434, 952
BssMI	GATC	8 cut(s)	48, 201, 295, 652, 664, 715, 820, 960
BssT1I	CCWWGG	1 cut(s)	952
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	3 cut(s)	373, 577, 649
Bst6I	CTCTTC	1 cut(s)	218
BstBAI	YACGTR	1 cut(s)	328
BstDEI	CTNAG	3 cut(s)	349, 529, 830
BstENI	CCTNNNNNAGG	1 cut(s)	170
BstF5I	GGATG	4 cut(s)	242, 279, 315, 499
BstFNI	CGCG	1 cut(s)	750
BstHHI	GCGC	1 cut(s)	383
BstKTI	GATC	8 cut(s)	51, 204, 298, 655, 667, 718, 823, 963
BstMAI	GTCTC	5 cut(s)	199, 252, 456, 839, 942
BstMBI	GATC	8 cut(s)	48, 201, 295, 652, 664, 715, 820, 960
BstMCI	CGRYCG	1 cut(s)	748
BstNI	CCWGG	1 cut(s)	199
BstNSI	RCATGY	1 cut(s)	778
BstSCI	CCNGG	1 cut(s)	197
BstSLI	GKGCMC	1 cut(s)	633
BstUI	CGCG	1 cut(s)	750
BstV1I	GCAGC	5 cut(s)	34, 84, 664, 683, 898
BstX2I	RGATCY	1 cut(s)	664
BstXI	CCANNNNNNTGG	1 cut(s)	766
BstYI	RGATCY	1 cut(s)	664
Bsu15I	ATCGAT	3 cut(s)	551, 561, 819
BsuI	GTATCC	1 cut(s)	878
BsuRI	GGCC	1 cut(s)	347
BsuTUI	ATCGAT	3 cut(s)	551, 561, 819
BtsCI	GGATG	4 cut(s)	242, 279, 315, 499
BtsI	GCAGTG	2 cut(s)	613, 732
BtsIMutI	CAGTG	2 cut(s)	613, 732
CciI	TCATGA	1 cut(s)	45
CfoI	GCGC	1 cut(s)	383
Cfr13I	GGNCC	1 cut(s)	431
ClaI	ATCGAT	3 cut(s)	551, 561, 819
CseI	GACGC	2 cut(s)	234, 279
Csp6I	GTAC	3 cut(s)	325, 682, 778
CviAII	CATG	6 cut(s)	46, 179, 421, 479, 760, 775
CviJI	RGCY	9 cut(s)	5, 42, 97, 134, 303, 347, 593, 872, 911
CviKI_1	RGCY	9 cut(s)	5, 42, 97, 134, 303, 347, 593, 872, 911
CviQI	GTAC	3 cut(s)	325, 682, 778
DdeI	CTNAG	3 cut(s)	349, 529, 830
DpnI	GATC	8 cut(s)	50, 203, 297, 654, 666, 717, 822, 962
DpnII	GATC	8 cut(s)	48, 201, 295, 652, 664, 715, 820, 960
DraIII	CACNNNGTG	1 cut(s)	601
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Ecl136II	GAGCTC	1 cut(s)	593
Eco130I	CCWWGG	1 cut(s)	952
Eco147I	AGGCCT	1 cut(s)	347
Eco24I	GRGCYC	1 cut(s)	595
Eco31I	GGTCTC	1 cut(s)	942
Eco47I	GGWCC	1 cut(s)	431
Eco53kI	GAGCTC	1 cut(s)	593
Eco57I	CTGAAG	1 cut(s)	156
EcoICRI	GAGCTC	1 cut(s)	593
EcoNI	CCTNNNNNAGG	1 cut(s)	170
EcoO109I	RGGNCCY	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	197
EcoT14I	CCWWGG	1 cut(s)	952
EcoT38I	GRGCYC	1 cut(s)	595
ErhI	CCWWGG	1 cut(s)	952
Esp3I	CGTCTC	2 cut(s)	199, 252
FaeI	CATG	6 cut(s)	49, 182, 424, 482, 763, 778
FalI	AAGNNNNNCTT	2 cut(s)	776, 808
FatI	CATG	6 cut(s)	45, 178, 420, 478, 759, 774
Fnu4HI	GCNGC	7 cut(s)	23, 98, 264, 678, 697, 912, 976
FokI	GGATG	4 cut(s)	249, 286, 322, 506
FriOI	GRGCYC	1 cut(s)	595
Fsp4HI	GCNGC	7 cut(s)	23, 98, 264, 678, 697, 912, 976
GlaI	GCGC	1 cut(s)	382
GluI	GCNGC	7 cut(s)	23, 98, 264, 678, 697, 912, 976
GsuI	CTGGAG	1 cut(s)	966
HaeIII	GGCC	1 cut(s)	347
HgaI	GACGC	2 cut(s)	234, 279
HhaI	GCGC	1 cut(s)	383
Hin1II	CATG	6 cut(s)	49, 182, 424, 482, 763, 778
Hin6I	GCGC	1 cut(s)	381
HinP1I	GCGC	1 cut(s)	381
HindIII	AAGCTT	1 cut(s)	40
HinfI	GANTC	8 cut(s)	278, 475, 497, 518, 636, 703, 741, 763
Hpy166II	GTNNAC	4 cut(s)	331, 613, 631, 985
Hpy188I	TCNGA	9 cut(s)	206, 283, 295, 300, 438, 720, 877, 928, 965
Hpy188III	TCNNGA	7 cut(s)	46, 540, 668, 713, 738, 767, 793
Hpy8I	GTNNAC	4 cut(s)	331, 613, 631, 985
Hpy99I	CGWCG	1 cut(s)	295
HpyAV	CCTTC	3 cut(s)	349, 450, 563
HpyCH4III	ACNGT	3 cut(s)	373, 577, 649
HpyCH4IV	ACGT	2 cut(s)	327, 789
HpyCH4V	TGCA	8 cut(s)	73, 100, 225, 404, 482, 631, 730, 914
HpyF3I	CTNAG	3 cut(s)	349, 529, 830
HpySE526I	ACGT	2 cut(s)	327, 789
Hsp92II	CATG	6 cut(s)	49, 182, 424, 482, 763, 778
HspAI	GCGC	1 cut(s)	381
Kzo9I	GATC	8 cut(s)	48, 201, 295, 652, 664, 715, 820, 960
LmnI	GCTCC	2 cut(s)	300, 590
Lsp1109I	GCAGC	5 cut(s)	34, 84, 664, 683, 898
LweI	GCATC	2 cut(s)	232, 567
MaeII	ACGT	2 cut(s)	327, 789
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	8 cut(s)	50, 203, 297, 654, 666, 717, 822, 962
MboI	GATC	8 cut(s)	48, 201, 295, 652, 664, 715, 820, 960
MboII	GAAGA	2 cut(s)	149, 205
MflI	RGATCY	1 cut(s)	664
MhlI	GDGCHC	3 cut(s)	537, 595, 633
MluCI	AATT	4 cut(s)	74, 316, 708, 915
MlyI	GAGTC	4 cut(s)	287, 484, 506, 630
MmeI	TCCRAC	3 cut(s)	273, 680, 906
MnlI	CCTC	8 cut(s)	148, 166, 226, 253, 375, 422, 444, 695
MseI	TTAA	2 cut(s)	38, 321
MslI	CAYNNNNRTG	1 cut(s)	419
MspR9I	CCNGG	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	199
MvnI	CGCG	1 cut(s)	750
NdeII	GATC	8 cut(s)	48, 201, 295, 652, 664, 715, 820, 960
NlaIII	CATG	6 cut(s)	49, 182, 424, 482, 763, 778
NlaIV	GGNNCC	1 cut(s)	666
NmuCI	GTSAC	1 cut(s)	157
NspI	RCATGY	1 cut(s)	778
PagI	TCATGA	1 cut(s)	45
PceI	AGGCCT	1 cut(s)	347
PciI	ACATGT	1 cut(s)	774
PfeI	GAWTC	4 cut(s)	518, 703, 741, 763
PflMI	CCANNNNNTGG	1 cut(s)	944
PfoI	TCCNGGA	1 cut(s)	197
PkrI	GCNGC	7 cut(s)	24, 99, 265, 679, 698, 913, 977
PleI	GAGTC	4 cut(s)	286, 483, 505, 630
PpsI	GAGTC	4 cut(s)	286, 483, 505, 630
Ppu21I	YACGTR	1 cut(s)	328
PpuMI	RGGWCCY	1 cut(s)	431
PscI	ACATGT	1 cut(s)	774
PsiI	TTATAA	1 cut(s)	392
Psp124BI	GAGCTC	1 cut(s)	595
Psp5II	RGGWCCY	1 cut(s)	431
Psp6I	CCWGG	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	666
PspPI	GGNCC	1 cut(s)	431
PspPPI	RGGWCCY	1 cut(s)	431
PsuI	RGATCY	1 cut(s)	664
RsaI	GTAC	3 cut(s)	326, 683, 779
RsaNI	GTAC	3 cut(s)	325, 682, 778
RseI	CAYNNNNRTG	1 cut(s)	419
SacI	GAGCTC	1 cut(s)	595
SaqAI	TTAA	2 cut(s)	38, 321
SatI	GCNGC	7 cut(s)	23, 98, 264, 678, 697, 912, 976
Sau3AI	GATC	8 cut(s)	48, 201, 295, 652, 664, 715, 820, 960
Sau96I	GGNCC	1 cut(s)	431
SchI	GAGTC	4 cut(s)	287, 484, 506, 630
ScrFI	CCNGG	1 cut(s)	199
SduI	GDGCHC	3 cut(s)	537, 595, 633
SfaNI	GCATC	2 cut(s)	232, 567
SinI	GGWCC	1 cut(s)	431
SmiMI	CAYNNNNRTG	1 cut(s)	419
Sse9I	AATT	4 cut(s)	74, 316, 708, 915
SseBI	AGGCCT	1 cut(s)	347
SsiI	CCGC	4 cut(s)	189, 263, 748, 976
SstI	GAGCTC	1 cut(s)	595
StuI	AGGCCT	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	197
StyI	CCWWGG	1 cut(s)	952
TaaI	ACNGT	3 cut(s)	373, 577, 649
TaiI	ACGT	2 cut(s)	330, 792
TaqI	TCGA	6 cut(s)	541, 551, 561, 607, 744, 819
TasI	AATT	4 cut(s)	74, 316, 708, 915
TatI	WGTACW	1 cut(s)	777
TauI	GCSGC	2 cut(s)	266, 978
TfiI	GAWTC	4 cut(s)	518, 703, 741, 763
Tru1I	TTAA	2 cut(s)	38, 321
Tru9I	TTAA	2 cut(s)	38, 321
TscAI	CASTG	2 cut(s)	620, 732
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	5 cut(s)	22, 97, 677, 696, 911
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	34, 461
TspRI	CASTG	2 cut(s)	620, 732
Van91I	CCANNNNNTGG	1 cut(s)	944
VneI	GTGCAC	1 cut(s)	629
VpaK11BI	GGWCC	1 cut(s)	431
XagI	CCTNNNNNAGG	1 cut(s)	170
XapI	RAATTY	1 cut(s)	316
XceI	RCATGY	1 cut(s)	778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.