Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0014364

Physical Location & Seq

Genomic Coordinates Forward (+)

12449265 .. 12452064

Gene Structure 2800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g09720.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGAGATTACACACCTCTATATATAATAATTTTCTTGAACTTTGCTTCTTTGTAATTCAACATTTTCGTGTTGCGAAACCTCTTTTACTCATCACCGTTAAGGAAGAGCTAGAACTGCTAAGCATGATGGCCTTCTATAAGCACCACGCTTTCTCAAGCTTCTCGATGTTTTTGTTGTTTCCATTTCTCTTGCAATTTCAGTTTGGTAAAAGTGAGCTCCAGCTTAACTATTACTCCAATAGTTGCCCAAAAGCTGAAGAAATCATCAAGCAAGAGGTCACCAAGCTATACCATGAACATGGGAACACAGCCGTTTCGTGGTTAAGAAATCTCTTTCACGATTGCATCGTTCAGGGATGTGATGCCTCTCTATTGCTAGAGAGTGTGAAAGGCATAGAGTCAGAGAAGGCATCGGGGAGGAGCTTCGGGATGAGAAATTTCAAGTACGTAAACACAATAAAAAAGGCCCTTGAGGACGAATGCCCTTCCACAGTTTCTTGTGCTGATGTTGTTGCTCTTTCTGCAAGAGATGGCATTGTCATGTTAGGAGGGCCACGCATTGAGATGAAGACGGGAAGGAAGGACAGCAAGGAGAGTTATGCAAGTGTGGTGGAAGAGTTCATTCCTAATCACAATGATTCCATATCTTCAGTGCTTTCTCGCTTTCAGTCCATCGGCATCGATGCCGAAGGAACAGTGGCCATTTTAGGCAGGAGCTCACTCTGTGGGTCGAGTCCACTGTGTGAACCTGGTAGGGAGGCTCTACCCAACCGTGGATCCAACCCTAGACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

265

Amino Acids

29.57

Weight (kDa)

6.71

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37130 AT2G37130
fragaria_vesca	FvH4_6g15580
malus_domestica	MD04G1101700.v1.1
prunus_persica	Prupe.6G239400_v2.0.a1 Prupe.6G239400_v2.0.a1
pyrus_communis	pycom04g09720
rosa_chinensis	RchiOBHm_Chr3g0469141
rosa_laevigata	RLG00000024370
rosa_multiflora	Rmu_sc0000302.1_g000012
rosa_roxburghii	Rroxscaffold_6G00412160
rosa_rugosa	Rorug03G0100000 Rorug03G0100000
rosa_samantha	Rh3AG149100 Rh3BG172300 Rh3DG203300
rosa_wichuraiana	Rw3G014060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	771, 784
AcoI	YGGCCR	1 cut(s)	699
AcsI	RAATTY	1 cut(s)	436
AcuI	CTGAAG	2 cut(s)	276, 633
AdeI	CACNNNGTG	2 cut(s)	725, 743
AfaI	GTAC	1 cut(s)	446
AfiI	CCNNNNNNNGG	2 cut(s)	318, 773
AgsI	TTSAA	3 cut(s)	38, 59, 442
AjnI	CCWGG	1 cut(s)	748
AluBI	AGCT	8 cut(s)	109, 159, 217, 223, 254, 286, 423, 717
AluI	AGCT	8 cut(s)	109, 159, 217, 223, 254, 286, 423, 717
Alw21I	GWGCWC	2 cut(s)	219, 719
AlwI	GGATC	2 cut(s)	771, 784
AoxI	GGCC	4 cut(s)	129, 465, 551, 699
ApoI	RAATTY	1 cut(s)	436
AspS9I	GGNCC	2 cut(s)	466, 551
AsuHPI	GGTGA	2 cut(s)	85, 271
BalI	TGGCCA	1 cut(s)	701
BamHI	GGATCC	1 cut(s)	776
BanII	GRGCYC	2 cut(s)	219, 719
BbsI	GAAGAC	1 cut(s)	575
Bbv12I	GWGCWC	2 cut(s)	219, 719
BccI	CCATC	3 cut(s)	121, 524, 680
BceAI	ACGGC	1 cut(s)	296
BciT130I	CCWGG	1 cut(s)	750
BfaI	CTAG	3 cut(s)	110, 377, 786
BlpI	GCTNAGC	1 cut(s)	119
Bme1390I	CCNGG	1 cut(s)	750
BmgT120I	GGNCC	2 cut(s)	466, 551
BmiI	GGNNCC	1 cut(s)	778
BmrFI	CCNGG	1 cut(s)	750
BmsI	GCATC	5 cut(s)	352, 354, 419, 673, 687
BpiI	GAAGAC	1 cut(s)	575
BpmI	CTGGAG	1 cut(s)	203
Bpu1102I	GCTNAGC	1 cut(s)	119
BpuEI	CTTGAG	2 cut(s)	139, 491
Bsa29I	ATCGAT	1 cut(s)	681
BsaAI	YACGTR	1 cut(s)	448
BsaJI	CCNNGG	1 cut(s)	772
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	2 cut(s)	318, 773
BseBI	CCWGG	1 cut(s)	750
BseCI	ATCGAT	1 cut(s)	681
BseDI	CCNNGG	1 cut(s)	772
BseGI	GGATG	2 cut(s)	362, 435
BseLI	CCNNNNNNNGG	2 cut(s)	318, 773
BseRI	GAGGAG	1 cut(s)	433
BshFI	GGCC	4 cut(s)	131, 467, 553, 701
BshVI	ATCGAT	1 cut(s)	681
BsiHKAI	GWGCWC	2 cut(s)	219, 719
BslI	CCNNNNNNNGG	2 cut(s)	318, 773
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	4 cut(s)	131, 467, 553, 701
Bsp1286I	GDGCHC	2 cut(s)	219, 719
Bsp143I	GATC	1 cut(s)	776
Bsp1720I	GCTNAGC	1 cut(s)	119
BspANI	GGCC	4 cut(s)	131, 467, 553, 701
BspDI	ATCGAT	1 cut(s)	681
BspLI	GGNNCC	1 cut(s)	778
BspPI	GGATC	2 cut(s)	771, 784
BspQI	GCTCTTC	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	772
BssMI	GATC	1 cut(s)	776
Bst2UI	CCWGG	1 cut(s)	750
Bst4CI	ACNGT	5 cut(s)	97, 493, 697, 741, 773
Bst6I	CTCTTC	2 cut(s)	99, 609
BstBAI	YACGTR	1 cut(s)	448
BstDEI	CTNAG	1 cut(s)	119
BstDSI	CCRYGG	1 cut(s)	772
BstEII	GGTNACC	1 cut(s)	277
BstF5I	GGATG	2 cut(s)	362, 435
BstKTI	GATC	1 cut(s)	779
BstMBI	GATC	1 cut(s)	776
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 521
BstNI	CCWGG	1 cut(s)	750
BstPI	GGTNACC	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	748
BstSNI	TACGTA	1 cut(s)	448
BstV2I	GAAGAC	1 cut(s)	575
BstX2I	RGATCY	1 cut(s)	776
BstXI	CCANNNNNNTGG	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	776
Bsu15I	ATCGAT	1 cut(s)	681
BsuRI	GGCC	4 cut(s)	131, 467, 553, 701
BsuTUI	ATCGAT	1 cut(s)	681
BtgI	CCRYGG	1 cut(s)	772
BtsCI	GGATG	2 cut(s)	362, 435
BtsIMutI	CAGTG	3 cut(s)	657, 702, 737
Cfr13I	GGNCC	2 cut(s)	466, 551
ClaI	ATCGAT	1 cut(s)	681
CsiI	ACCWGGT	1 cut(s)	748
Csp6I	GTAC	1 cut(s)	445
CspCI	CAANNNNNGTGG	2 cut(s)	591, 626
CviAII	CATG	4 cut(s)	124, 293, 299, 541
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	1 cut(s)	119
DpnI	GATC	1 cut(s)	778
DpnII	GATC	1 cut(s)	776
DraIII	CACNNNGTG	2 cut(s)	725, 743
EaeI	YGGCCR	1 cut(s)	699
Eam1104I	CTCTTC	2 cut(s)	99, 609
EarI	CTCTTC	2 cut(s)	99, 609
Ecl136II	GAGCTC	2 cut(s)	217, 717
Eco105I	TACGTA	1 cut(s)	448
Eco24I	GRGCYC	2 cut(s)	219, 719
Eco53kI	GAGCTC	2 cut(s)	217, 717
Eco57I	CTGAAG	2 cut(s)	276, 633
Eco91I	GGTNACC	1 cut(s)	277
EcoICRI	GAGCTC	2 cut(s)	217, 717
EcoO109I	RGGNCCY	1 cut(s)	466
EcoO65I	GGTNACC	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	748
EcoT38I	GRGCYC	2 cut(s)	219, 719
FaeI	CATG	4 cut(s)	127, 296, 302, 544
FatI	CATG	4 cut(s)	123, 292, 298, 540
FokI	GGATG	2 cut(s)	369, 442
FriOI	GRGCYC	2 cut(s)	219, 719
FspBI	CTAG	3 cut(s)	110, 377, 786
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	4 cut(s)	131, 467, 553, 701
Hin1II	CATG	4 cut(s)	127, 296, 302, 544
HindIII	AAGCTT	1 cut(s)	157
HinfI	GANTC	3 cut(s)	398, 638, 733
HphI	GGTGA	2 cut(s)	85, 271
Hpy166II	GTNNAC	3 cut(s)	451, 737, 746
Hpy188I	TCNGA	1 cut(s)	403
Hpy188III	TCNNGA	4 cut(s)	35, 163, 338, 427
Hpy8I	GTNNAC	3 cut(s)	451, 737, 746
HpyAV	CCTTC	6 cut(s)	142, 400, 495, 570, 574, 683
HpyCH4III	ACNGT	5 cut(s)	97, 493, 697, 741, 773
HpyCH4IV	ACGT	1 cut(s)	447
HpyCH4V	TGCA	4 cut(s)	193, 345, 524, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 521
HpyF3I	CTNAG	1 cut(s)	119
HpySE526I	ACGT	1 cut(s)	447
Hsp92II	CATG	4 cut(s)	127, 296, 302, 544
Kzo9I	GATC	1 cut(s)	776
LguI	GCTCTTC	1 cut(s)	99
LmnI	GCTCC	3 cut(s)	222, 420, 714
LpnPI	CCDG	5 cut(s)	233, 338, 697, 735, 762
LweI	GCATC	5 cut(s)	352, 354, 419, 673, 687
MabI	ACCWGGT	1 cut(s)	748
MaeI	CTAG	3 cut(s)	110, 377, 786
MaeII	ACGT	1 cut(s)	447
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	1 cut(s)	778
MboI	GATC	1 cut(s)	776
MboII	GAAGA	5 cut(s)	116, 269, 580, 626, 639
MflI	RGATCY	1 cut(s)	776
MhlI	GDGCHC	2 cut(s)	219, 719
MlsI	TGGCCA	1 cut(s)	701
MluCI	AATT	4 cut(s)	28, 54, 194, 436
MluNI	TGGCCA	1 cut(s)	701
MlyI	GAGTC	2 cut(s)	407, 742
MnlI	CCTC	8 cut(s)	25, 90, 268, 376, 411, 466, 542, 751
Mox20I	TGGCCA	1 cut(s)	701
MscI	TGGCCA	1 cut(s)	701
MseI	TTAA	3 cut(s)	99, 225, 323
MslI	CAYNNNNRTG	4 cut(s)	66, 297, 539, 563
Msp20I	TGGCCA	1 cut(s)	701
MspR9I	CCNGG	1 cut(s)	750
Mva1269I	GAATGC	1 cut(s)	485
MvaI	CCWGG	1 cut(s)	750
MwoI	GCNNNNNNNGC	2 cut(s)	115, 521
NdeII	GATC	1 cut(s)	776
NlaIII	CATG	4 cut(s)	127, 296, 302, 544
NlaIV	GGNNCC	1 cut(s)	778
NmuCI	GTSAC	1 cut(s)	277
PciSI	GCTCTTC	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PctI	GAATGC	1 cut(s)	485
PfeI	GAWTC	1 cut(s)	638
PleI	GAGTC	2 cut(s)	406, 741
PpsI	GAGTC	2 cut(s)	406, 741
Ppu21I	YACGTR	1 cut(s)	448
Psp124BI	GAGCTC	2 cut(s)	219, 719
Psp6I	CCWGG	1 cut(s)	748
PspEI	GGTNACC	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	748
PspN4I	GGNNCC	1 cut(s)	778
PspPI	GGNCC	2 cut(s)	466, 551
PsuI	RGATCY	1 cut(s)	776
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
RseI	CAYNNNNRTG	4 cut(s)	66, 297, 539, 563
SacI	GAGCTC	2 cut(s)	219, 719
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	3 cut(s)	99, 225, 323
Sau3AI	GATC	1 cut(s)	776
Sau96I	GGNCC	2 cut(s)	466, 551
SchI	GAGTC	2 cut(s)	407, 742
ScrFI	CCNGG	1 cut(s)	750
SduI	GDGCHC	2 cut(s)	219, 719
SexAI	ACCWGGT	1 cut(s)	748
SfaNI	GCATC	5 cut(s)	352, 354, 419, 673, 687
SmiMI	CAYNNNNRTG	4 cut(s)	66, 297, 539, 563
SmlI	CTYRAG	2 cut(s)	154, 470
SmoI	CTYRAG	2 cut(s)	154, 470
SnaBI	TACGTA	1 cut(s)	448
Sse9I	AATT	4 cut(s)	28, 54, 194, 436
SspMI	CTAG	3 cut(s)	110, 377, 786
SstI	GAGCTC	2 cut(s)	219, 719
StyD4I	CCNGG	1 cut(s)	748
TaaI	ACNGT	5 cut(s)	97, 493, 697, 741, 773
TaiI	ACGT	1 cut(s)	450
TaqI	TCGA	3 cut(s)	164, 681, 731
TasI	AATT	4 cut(s)	28, 54, 194, 436
TfiI	GAWTC	1 cut(s)	638
Tru1I	TTAA	3 cut(s)	99, 225, 323
Tru9I	TTAA	3 cut(s)	99, 225, 323
TscAI	CASTG	3 cut(s)	657, 702, 744
TseFI	GTSAC	1 cut(s)	277
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	3 cut(s)	309, 581, 610
TspRI	CASTG	3 cut(s)	657, 702, 744
XapI	RAATTY	1 cut(s)	436
XspI	CTAG	3 cut(s)	110, 377, 786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.