Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000302.1

Orthogroup ID

OG0014364

Physical Location & Seq

Genomic Coordinates Forward (+)

22658 .. 28075

Gene Structure 5418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000302.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

atggcttcctataaatataagcagcactctttggttttaagcttcatgatcacgttatttttgttgctcttgcaatttcaagttggtataagtgagctgcaacagaactattattcccagagttgccctaaagctgaagaaatcatcaagcaagaggtcactaacctttacgaggaacatggaaataccgccgtctcctggatcagaaatctcttccacgattgcattgttgagggatgtgatgcgtctctgttgttagaggcggcagacgggatggagtcagagaaagcgtcggatcggagctttgggatgagaaattttaagtacgtgaacaccatcaaacaggccctagagaaggaatgtcctcttacagtttcttgcgctgatgttataactctttctgcaagagatggcattgtcatgttaggagggcctaggattgaaatgaaaacgggaaggagagacagcaaggagagtcatgcaagagtggtggatgagtctatacctaatcacaatgattccatctccttagtgctctctcgatttcaatcgattggcatcgatgttgaaggcacggttgcccttttaggagctcactccgtgggtcgagttcactgcctgaaccttgtgcacagactctaccctactgttgatccaactttggatcccgaccatgctgcgtacctcaaagttcgctgcccgattccaattcctgacccggaagcagtgcagtattcaagattcgaccgcgaaacacccatgattctggataacatgtactacaagaacgtcttgaaccacaagggtttgctcataatcgatcaacaactgagttctgacccagagacattgccttttgtggagaaaatggcttccgataatggatacttctacgagcagttttcgagagctgcaattcttttgtcggagaacaatccacttactggagaccaaggagagatcagaaaggattgccgctatgtgaaccgcaaaactgcccttgggacccccggaattggccggaaaaaggccgccggagttagaggcagagcagccaccgaccaccaccaactgcgttgggaaaacggcaaggcctccgacgagcatgaaatcgatcacttcaggtgctgtccttcttggggattgatcaggggccggaaatggaaacaagcttctgatctcaccgcctctacaagccgttccactggcagctgcacaaggtcaaggcgaaggcgtgggaataagtttggtgtgatttggtggccggagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

423

Amino Acids

47.75

Weight (kDa)

7.6

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37130 AT2G37130
fragaria_vesca	FvH4_6g15580
malus_domestica	MD04G1101700.v1.1
prunus_persica	Prupe.6G239400_v2.0.a1 Prupe.6G239400_v2.0.a1
pyrus_communis	pycom04g09720
rosa_chinensis	RchiOBHm_Chr3g0469141
rosa_laevigata	RLG00000024370
rosa_multiflora	Rmu_sc0000302.1_g000012
rosa_roxburghii	Rroxscaffold_6G00412160
rosa_rugosa	Rorug03G0100000 Rorug03G0100000
rosa_samantha	Rh3AG149100 Rh3BG172300 Rh3DG203300
rosa_wichuraiana	Rw3G014060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	392
AccB7I	CCANNNNNTGG	1 cut(s)	944
AccII	CGCG	1 cut(s)	750
AciI	CCGC	7 cut(s)	189, 263, 748, 976, 988, 1032, 1185
AclWI	GGATC	5 cut(s)	209, 303, 647, 659, 672
AcoI	YGGCCR	2 cut(s)	1018, 1262
AcsI	RAATTY	1 cut(s)	316
AcuI	CTGAAG	2 cut(s)	156, 1105
AdeI	CACNNNGTG	1 cut(s)	601
AfaI	GTAC	3 cut(s)	326, 683, 779
AfiI	CCNNNNNNNGG	7 cut(s)	172, 198, 355, 944, 1016, 1027, 1139
AflIII	ACRYGT	1 cut(s)	774
AgsI	TTSAA	6 cut(s)	80, 443, 548, 569, 738, 796
AjnI	CCWGG	1 cut(s)	197
AloI	GAACNNNNNNTCC	2 cut(s)	98, 130
AluBI	AGCT	8 cut(s)	42, 97, 134, 303, 593, 911, 1172, 1212
AluI	AGCT	8 cut(s)	42, 97, 134, 303, 593, 911, 1172, 1212
Alw21I	GWGCWC	3 cut(s)	537, 595, 633
Alw26I	GTCTC	5 cut(s)	199, 252, 456, 839, 942
Alw44I	GTGCAC	1 cut(s)	629
AlwI	GGATC	5 cut(s)	209, 303, 647, 659, 672
AlwNI	CAGNNNCTG	1 cut(s)	1128
AoxI	GGCC	7 cut(s)	345, 431, 1018, 1029, 1092, 1153, 1262
ApaLI	GTGCAC	1 cut(s)	629
ApeKI	GCWGC	8 cut(s)	22, 97, 677, 696, 911, 1052, 1209, 1212
ApoI	RAATTY	1 cut(s)	316
AspA2I	CCTAGG	1 cut(s)	434
AspLEI	GCGC	1 cut(s)	383
AspS9I	GGNCC	4 cut(s)	346, 431, 1005, 1153
AsuC2I	CCSGG	2 cut(s)	719, 1011
AsuHPI	GGTGA	1 cut(s)	1174
AvaII	GGWCC	1 cut(s)	1005
AvrII	CCTAGG	1 cut(s)	434
BaeGI	GKGCMC	1 cut(s)	633
BamHI	GGATCC	1 cut(s)	664
BanII	GRGCYC	1 cut(s)	595
Bbv12I	GWGCWC	3 cut(s)	537, 595, 633
BbvI	GCAGC	8 cut(s)	34, 84, 664, 683, 898, 1064, 1199, 1221
BccI	CCATC	4 cut(s)	268, 344, 404, 530
BceAI	ACGGC	3 cut(s)	176, 1102, 1182
BcgI	CGANNNNNNTGC	4 cut(s)	597, 631, 659, 693
BciT130I	CCWGG	1 cut(s)	199
BciVI	GTATCC	1 cut(s)	878
BclI	TGATCA	2 cut(s)	48, 1146
BcnI	CCSGG	2 cut(s)	719, 1011
BcoDI	GTCTC	5 cut(s)	199, 252, 456, 839, 942
BfaI	CTAG	2 cut(s)	350, 435
BfuI	GTATCC	1 cut(s)	878
BlnI	CCTAGG	1 cut(s)	434
Bme1390I	CCNGG	3 cut(s)	199, 719, 1011
Bme18I	GGWCC	1 cut(s)	1005
BmgT120I	GGNCC	4 cut(s)	346, 431, 1005, 1153
BmiI	GGNNCC	4 cut(s)	666, 1006, 1007, 1154
BmrFI	CCNGG	3 cut(s)	199, 719, 1011
BmsI	GCATC	2 cut(s)	232, 567
BpmI	CTGGAG	1 cut(s)	966
BpuMI	CCSGG	2 cut(s)	719, 1011
Bsa29I	ATCGAT	4 cut(s)	551, 561, 819, 1113
BsaAI	YACGTR	1 cut(s)	328
BsaBI	GATNNNNATC	2 cut(s)	547, 557
BsaI	GGTCTC	1 cut(s)	942
BsaJI	CCNNGG	5 cut(s)	434, 600, 952, 1000, 1009
Bsc4I	CCNNNNNNNGG	7 cut(s)	172, 198, 355, 944, 1016, 1027, 1139
Bse1I	ACTGG	2 cut(s)	949, 1210
Bse3DI	GCAATG	1 cut(s)	848
Bse8I	GATNNNNATC	2 cut(s)	547, 557
BseBI	CCWGG	1 cut(s)	199
BseCI	ATCGAT	4 cut(s)	551, 561, 819, 1113
BseDI	CCNNGG	5 cut(s)	434, 600, 952, 1000, 1009
BseGI	GGATG	4 cut(s)	242, 279, 315, 499
BseJI	GATNNNNATC	2 cut(s)	547, 557
BseLI	CCNNNNNNNGG	7 cut(s)	172, 198, 355, 944, 1016, 1027, 1139
BseMI	GCAATG	1 cut(s)	848
BseMII	CTCAG	1 cut(s)	821
BseNI	ACTGG	2 cut(s)	949, 1210
BseSI	GKGCMC	1 cut(s)	633
BseXI	GCAGC	8 cut(s)	34, 84, 664, 683, 898, 1064, 1199, 1221
BsgI	GTGCAG	2 cut(s)	749, 1198
Bsh1236I	CGCG	1 cut(s)	750
Bsh1285I	CGRYCG	1 cut(s)	748
BshFI	GGCC	7 cut(s)	347, 433, 1020, 1031, 1094, 1155, 1264
BshVI	ATCGAT	4 cut(s)	551, 561, 819, 1113
BsiEI	CGRYCG	1 cut(s)	748
BsiHKAI	GWGCWC	3 cut(s)	537, 595, 633
BsiSI	CCGG	6 cut(s)	719, 1011, 1021, 1035, 1156, 1265
BslFI	GGGAC	1 cut(s)	1018
BslI	CCNNNNNNNGG	7 cut(s)	172, 198, 355, 944, 1016, 1027, 1139
BsmAI	GTCTC	5 cut(s)	199, 252, 456, 839, 942
BsmBI	CGTCTC	2 cut(s)	199, 252
BsmFI	GGGAC	1 cut(s)	1018
BsnI	GGCC	7 cut(s)	347, 433, 1020, 1031, 1094, 1155, 1264
Bso31I	GGTCTC	1 cut(s)	942
Bsp1286I	GDGCHC	3 cut(s)	537, 595, 633
BspACI	CCGC	7 cut(s)	189, 263, 748, 976, 988, 1032, 1185
BspANI	GGCC	7 cut(s)	347, 433, 1020, 1031, 1094, 1155, 1264
BspCNI	CTCAG	1 cut(s)	822
BspDI	ATCGAT	4 cut(s)	551, 561, 819, 1113
BspFNI	CGCG	1 cut(s)	750
BspHI	TCATGA	1 cut(s)	45
BspLI	GGNNCC	4 cut(s)	666, 1006, 1007, 1154
BspPI	GGATC	5 cut(s)	209, 303, 647, 659, 672
BspTNI	GGTCTC	1 cut(s)	942
BsrDI	GCAATG	1 cut(s)	848
BsrI	ACTGG	2 cut(s)	949, 1210
BssECI	CCNNGG	5 cut(s)	434, 600, 952, 1000, 1009
BssT1I	CCWWGG	3 cut(s)	434, 952, 1000
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	3 cut(s)	373, 577, 649
Bst6I	CTCTTC	1 cut(s)	218
BstBAI	YACGTR	1 cut(s)	328
BstDEI	CTNAG	2 cut(s)	529, 830
BstDSI	CCRYGG	1 cut(s)	600
BstENI	CCTNNNNNAGG	2 cut(s)	170, 353
BstF5I	GGATG	4 cut(s)	242, 279, 315, 499
BstFNI	CGCG	1 cut(s)	750
BstHHI	GCGC	1 cut(s)	383
BstMAI	GTCTC	5 cut(s)	199, 252, 456, 839, 942
BstMCI	CGRYCG	1 cut(s)	748
BstNI	CCWGG	1 cut(s)	199
BstNSI	RCATGY	1 cut(s)	778
BstSCI	CCNGG	3 cut(s)	197, 717, 1009
BstSLI	GKGCMC	1 cut(s)	633
BstUI	CGCG	1 cut(s)	750
BstV1I	GCAGC	8 cut(s)	34, 84, 664, 683, 898, 1064, 1199, 1221
BstX2I	RGATCY	1 cut(s)	664
BstXI	CCANNNNNNTGG	1 cut(s)	766
BstYI	RGATCY	1 cut(s)	664
Bsu15I	ATCGAT	4 cut(s)	551, 561, 819, 1113
BsuI	GTATCC	1 cut(s)	878
BsuRI	GGCC	7 cut(s)	347, 433, 1020, 1031, 1094, 1155, 1264
BsuTUI	ATCGAT	4 cut(s)	551, 561, 819, 1113
BtgI	CCRYGG	1 cut(s)	600
BtsCI	GGATG	4 cut(s)	242, 279, 315, 499
BtsI	GCAGTG	2 cut(s)	613, 732
BtsIMutI	CAGTG	3 cut(s)	613, 732, 1203
CaiI	CAGNNNCTG	1 cut(s)	1128
CciI	TCATGA	1 cut(s)	45
CfoI	GCGC	1 cut(s)	383
Cfr13I	GGNCC	4 cut(s)	346, 431, 1005, 1153
ClaI	ATCGAT	4 cut(s)	551, 561, 819, 1113
CseI	GACGC	2 cut(s)	234, 279
Csp6I	GTAC	3 cut(s)	325, 682, 778
CspCI	CAANNNNNGTGG	2 cut(s)	471, 506
CviAII	CATG	8 cut(s)	46, 179, 421, 479, 674, 760, 775, 1106
CviQI	GTAC	3 cut(s)	325, 682, 778
DdeI	CTNAG	2 cut(s)	529, 830
DraIII	CACNNNGTG	1 cut(s)	601
EaeI	YGGCCR	2 cut(s)	1018, 1262
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Ecl136II	GAGCTC	1 cut(s)	593
Eco130I	CCWWGG	3 cut(s)	434, 952, 1000
Eco147I	AGGCCT	1 cut(s)	1094
Eco24I	GRGCYC	1 cut(s)	595
Eco31I	GGTCTC	1 cut(s)	942
Eco47I	GGWCC	1 cut(s)	1005
Eco53kI	GAGCTC	1 cut(s)	593
Eco57I	CTGAAG	2 cut(s)	156, 1105
EcoICRI	GAGCTC	1 cut(s)	593
EcoNI	CCTNNNNNAGG	2 cut(s)	170, 353
EcoO109I	RGGNCCY	3 cut(s)	346, 431, 1005
EcoRII	CCWGG	1 cut(s)	197
EcoT14I	CCWWGG	3 cut(s)	434, 952, 1000
EcoT38I	GRGCYC	1 cut(s)	595
ErhI	CCWWGG	3 cut(s)	434, 952, 1000
Esp3I	CGTCTC	2 cut(s)	199, 252
FaeI	CATG	8 cut(s)	49, 182, 424, 482, 677, 763, 778, 1109
FalI	AAGNNNNNCTT	2 cut(s)	776, 808
FaqI	GGGAC	1 cut(s)	1018
FatI	CATG	8 cut(s)	45, 178, 420, 478, 673, 759, 774, 1105
FbaI	TGATCA	2 cut(s)	48, 1146
FokI	GGATG	4 cut(s)	249, 286, 322, 506
FriOI	GRGCYC	1 cut(s)	595
FspBI	CTAG	2 cut(s)	350, 435
GlaI	GCGC	1 cut(s)	382
GsuI	CTGGAG	1 cut(s)	966
HaeIII	GGCC	7 cut(s)	347, 433, 1020, 1031, 1094, 1155, 1264
HapII	CCGG	6 cut(s)	719, 1011, 1021, 1035, 1156, 1265
HgaI	GACGC	2 cut(s)	234, 279
HhaI	GCGC	1 cut(s)	383
Hin1II	CATG	8 cut(s)	49, 182, 424, 482, 677, 763, 778, 1109
Hin6I	GCGC	1 cut(s)	381
HinP1I	GCGC	1 cut(s)	381
HindIII	AAGCTT	2 cut(s)	40, 1170
HinfI	GANTC	8 cut(s)	278, 475, 497, 518, 636, 703, 741, 763
HpaII	CCGG	6 cut(s)	719, 1011, 1021, 1035, 1156, 1265
HphI	GGTGA	1 cut(s)	1174
Hpy166II	GTNNAC	4 cut(s)	331, 613, 631, 985
Hpy188III	TCNNGA	8 cut(s)	46, 540, 668, 713, 738, 767, 793, 906
Hpy8I	GTNNAC	4 cut(s)	331, 613, 631, 985
Hpy99I	CGWCG	2 cut(s)	295, 1103
HpyAV	CCTTC	5 cut(s)	349, 450, 563, 1143, 1224
HpyCH4III	ACNGT	3 cut(s)	373, 577, 649
HpyCH4IV	ACGT	3 cut(s)	53, 327, 789
HpyCH4V	TGCA	9 cut(s)	73, 100, 225, 404, 482, 631, 730, 914, 1215
HpyF3I	CTNAG	2 cut(s)	529, 830
HpySE526I	ACGT	3 cut(s)	53, 327, 789
Hsp92II	CATG	8 cut(s)	49, 182, 424, 482, 677, 763, 778, 1109
HspAI	GCGC	1 cut(s)	381
KflI	GGGWCCC	1 cut(s)	1005
Ksp22I	TGATCA	2 cut(s)	48, 1146
LmnI	GCTCC	2 cut(s)	300, 590
Lsp1109I	GCAGC	8 cut(s)	34, 84, 664, 683, 898, 1064, 1199, 1221
LweI	GCATC	2 cut(s)	232, 567
MaeI	CTAG	2 cut(s)	350, 435
MaeII	ACGT	3 cut(s)	53, 327, 789
MaeIII	GTNAC	1 cut(s)	157
MboII	GAAGA	2 cut(s)	149, 205
MflI	RGATCY	1 cut(s)	664
MhlI	GDGCHC	3 cut(s)	537, 595, 633
MluCI	AATT	5 cut(s)	74, 316, 708, 915, 1014
MlyI	GAGTC	4 cut(s)	287, 484, 506, 630
MmeI	TCCRAC	4 cut(s)	273, 680, 906, 1122
MseI	TTAA	2 cut(s)	38, 321
MslI	CAYNNNNRTG	1 cut(s)	419
MspA1I	CMGCKG	1 cut(s)	1212
MspI	CCGG	6 cut(s)	719, 1011, 1021, 1035, 1156, 1265
MspR9I	CCNGG	3 cut(s)	199, 719, 1011
MvaI	CCWGG	1 cut(s)	199
MvnI	CGCG	1 cut(s)	750
NciI	CCSGG	2 cut(s)	719, 1011
NlaIII	CATG	8 cut(s)	49, 182, 424, 482, 677, 763, 778, 1109
NlaIV	GGNNCC	4 cut(s)	666, 1006, 1007, 1154
NmuCI	GTSAC	1 cut(s)	157
NspI	RCATGY	1 cut(s)	778
PagI	TCATGA	1 cut(s)	45
PceI	AGGCCT	1 cut(s)	1094
PciI	ACATGT	1 cut(s)	774
PfeI	GAWTC	4 cut(s)	518, 703, 741, 763
PflMI	CCANNNNNTGG	1 cut(s)	944
PfoI	TCCNGGA	1 cut(s)	197
PleI	GAGTC	4 cut(s)	286, 483, 505, 630
PpsI	GAGTC	4 cut(s)	286, 483, 505, 630
Ppu21I	YACGTR	1 cut(s)	328
PpuMI	RGGWCCY	1 cut(s)	1005
PscI	ACATGT	1 cut(s)	774
PsiI	TTATAA	1 cut(s)	392
Psp124BI	GAGCTC	1 cut(s)	595
Psp5II	RGGWCCY	1 cut(s)	1005
Psp6I	CCWGG	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	197
PspN4I	GGNNCC	4 cut(s)	666, 1006, 1007, 1154
PspPI	GGNCC	4 cut(s)	346, 431, 1005, 1153
PspPPI	RGGWCCY	1 cut(s)	1005
PstNI	CAGNNNCTG	1 cut(s)	1128
PsuI	RGATCY	1 cut(s)	664
PvuII	CAGCTG	1 cut(s)	1212
RsaI	GTAC	3 cut(s)	326, 683, 779
RsaNI	GTAC	3 cut(s)	325, 682, 778
RseI	CAYNNNNRTG	1 cut(s)	419
SacI	GAGCTC	1 cut(s)	595
SaqAI	TTAA	2 cut(s)	38, 321
Sau96I	GGNCC	4 cut(s)	346, 431, 1005, 1153
SchI	GAGTC	4 cut(s)	287, 484, 506, 630
ScrFI	CCNGG	3 cut(s)	199, 719, 1011
SduI	GDGCHC	3 cut(s)	537, 595, 633
SfaNI	GCATC	2 cut(s)	232, 567
SinI	GGWCC	1 cut(s)	1005
SmiMI	CAYNNNNRTG	1 cut(s)	419
Sse9I	AATT	5 cut(s)	74, 316, 708, 915, 1014
SseBI	AGGCCT	1 cut(s)	1094
SsiI	CCGC	7 cut(s)	189, 263, 748, 976, 988, 1032, 1185
SspMI	CTAG	2 cut(s)	350, 435
SstI	GAGCTC	1 cut(s)	595
StuI	AGGCCT	1 cut(s)	1094
StyD4I	CCNGG	3 cut(s)	197, 717, 1009
StyI	CCWWGG	3 cut(s)	434, 952, 1000
TaaI	ACNGT	3 cut(s)	373, 577, 649
TaiI	ACGT	3 cut(s)	56, 330, 792
TaqI	TCGA	8 cut(s)	541, 551, 561, 607, 744, 819, 905, 1113
TasI	AATT	5 cut(s)	74, 316, 708, 915, 1014
TatI	WGTACW	1 cut(s)	777
TauI	GCSGC	3 cut(s)	266, 978, 1034
TfiI	GAWTC	4 cut(s)	518, 703, 741, 763
Tru1I	TTAA	2 cut(s)	38, 321
Tru9I	TTAA	2 cut(s)	38, 321
TscAI	CASTG	3 cut(s)	620, 732, 1210
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	8 cut(s)	22, 97, 677, 696, 911, 1052, 1209, 1212
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	3 cut(s)	34, 461, 1122
TspGWI	ACGGA	1 cut(s)	589
TspRI	CASTG	3 cut(s)	620, 732, 1210
Van91I	CCANNNNNTGG	1 cut(s)	944
VneI	GTGCAC	1 cut(s)	629
VpaK11BI	GGWCC	1 cut(s)	1005
XagI	CCTNNNNNAGG	2 cut(s)	170, 353
XapI	RAATTY	1 cut(s)	316
XceI	RCATGY	1 cut(s)	778
XmaJI	CCTAGG	1 cut(s)	434
XspI	CTAG	2 cut(s)	350, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.