Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015653

Physical Location & Seq

Genomic Coordinates Reverse (-)

9773685 .. 9775308

Gene Structure 1624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g15670.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCCGAGATGGAACAAACCGCTATTGAGAATCATAACCTTCAACTTCCAGCTGGGTTTCGATTTCACCCATCCGACGAAGAGCTTATCGTCCACTACTTGAAAAATAAAGTCACTTCATCTCCTCTACCAGCAACCATCATCACTGAATTGGACTTATACAAGTACAATCCATGGGAGCTACCTCCAAAGGCCTTGTTCGGAAAAGAGGAGTGGTATTTCTTCACTCCAAGGGATCGGAAATACCCGAATGGAACGAGGCCTAATAGGGCGGCTGGTTTGGGTTACTGGAAGGCTACAGGGACTGATAAGCATATTTTCAGTTCTTGTGGAACGAAGAGCATCGGGGTGAAGAAAGCACTTGTGTTCTATACCGGGCACCCTCCTAAAGGTGTTAAGACTGAGTGGATCATGAACGAGTATAGATTGCTTGACACCACGATTTGGAGTACTACTTCAAAGCAAAAAGGGTCTATGAGGTTGGATCATTGGGTTCTATGCCGGGTTCGACAGAAATGCAACAATATGAGGAACATCTGGGAAGATCAAAATATTACTCCTAGTTATAAACTATCTGGTAACTTTAGACAAGTGGTGGATGAACCATGTTCAAAGGAAGCAAGCCCTAGCATTGAAATGGTCAGGAGTTATCTATACAAAGACTATCCTATGTTGCCCTACATGTTTGCCTCTCAGAAAGTGCTTCCTACCATCAAAACCACTTCAAGCATAAGCTTTCAGGACACTACTAATGGAAATGAGAAATCTTGCAGCCCTACTCCTGTTTACCACGAGGCCAATTCGAATAAGATTAACAATGGCGGGCAACTTTTAGTTTCTTCCCTTGACAGTTTGATCAACCCACTGAAGAGAAAGACTGAAGGAAATGATCACCCTCAACGTCGGTGTTCGGTTGCACCAAGCAAGAAGATATGTAACAGGGATTATCAAATGGAGGAAGTAAGCAATGGATCCATGATGAATCCTTGGGGACTAGATAACCAGCTTGGAGCTGACAATCTTAATGTAGATCAATGGAGTTCCATAATCCAGTATCAAGAACTCAGTCAGTTAATCGGGTTTCCCTGCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

365

Amino Acids

41.63

Weight (kDa)

8.73

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	17 - 143	1.7e-47	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0015653)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15670
malus_domestica	MD04G1100400.v1.1
prunus_persica	Prupe.6G238600_v2.0.a1
pyrus_communis	pycom04g09540
rosa_chinensis	RchiOBHm_Chr3g0469371
rosa_laevigata	RLG00000024355
rosa_multiflora	Rmu_co8391809.1_g000001 Rmu_sc0013046.1_g000008 Rmu_sc0013047.1_g000009
rosa_roxburghii	Rroxscaffold_6G00411950
rosa_rugosa	Rorug03G0101000
rosa_samantha	Rh3AG150200 Rh3BG173900 Rh3CG164900 Rh3DG201600
rosa_wichuraiana	Rw3G014160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	567
AccB1I	GGYRCC	1 cut(s)	378
AccB7I	CCANNNNNTGG	1 cut(s)	444
AciI	CCGC	3 cut(s)	21, 272, 822
AclWI	GGATC	5 cut(s)	243, 416, 492, 966, 979
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	887, 900
AfaI	GTAC	2 cut(s)	167, 451
AfiI	CCNNNNNNNGG	2 cut(s)	389, 444
AflIII	ACRYGT	1 cut(s)	681
AgsI	TTSAA	6 cut(s)	44, 103, 459, 612, 635, 726
AluBI	AGCT	6 cut(s)	53, 85, 181, 735, 1006, 1013
AluI	AGCT	6 cut(s)	53, 85, 181, 735, 1006, 1013
AlwI	GGATC	5 cut(s)	243, 416, 492, 966, 979
AlwNI	CAGNNNCTG	1 cut(s)	305
AoxI	GGCC	4 cut(s)	3, 192, 260, 795
ApeKI	GCWGC	1 cut(s)	771
AsuC2I	CCSGG	2 cut(s)	376, 503
AsuHPI	GGTGA	3 cut(s)	59, 361, 884
AsuII	TTCGAA	1 cut(s)	803
BaeGI	GKGCMC	1 cut(s)	381
BamHI	GGATCC	1 cut(s)	971
BanI	GGYRCC	1 cut(s)	378
BauI	CACGAG	1 cut(s)	791
BbvI	GCAGC	1 cut(s)	783
BccI	CCATC	4 cut(s)	4, 79, 146, 719
BcgI	CGANNNNNNTGC	2 cut(s)	498, 532
BclI	TGATCA	2 cut(s)	855, 889
BcnI	CCSGG	2 cut(s)	376, 503
BfaI	CTAG	3 cut(s)	561, 627, 995
BfmI	CTRYAG	1 cut(s)	297
BisI	GCNGC	2 cut(s)	273, 772
BlsI	GCNGC	2 cut(s)	274, 773
BmcAI	AGTACT	1 cut(s)	451
Bme1390I	CCNGG	2 cut(s)	376, 503
BmiI	GGNNCC	2 cut(s)	380, 973
BmrFI	CCNGG	2 cut(s)	376, 503
BmsI	GCATC	1 cut(s)	351
Bpu14I	TTCGAA	1 cut(s)	803
BpuMI	CCSGG	2 cut(s)	376, 503
BsaJI	CCNNGG	3 cut(s)	173, 230, 986
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	2 cut(s)	389, 444
Bse1I	ACTGG	2 cut(s)	293, 1051
Bse3DI	GCAATG	1 cut(s)	973
BseDI	CCNNGG	3 cut(s)	173, 230, 986
BseGI	GGATG	2 cut(s)	71, 604
BseLI	CCNNNNNNNGG	2 cut(s)	389, 444
BseMI	GCAATG	1 cut(s)	973
BseMII	CTCAG	3 cut(s)	393, 707, 1078
BseNI	ACTGG	2 cut(s)	293, 1051
BseRI	GAGGAG	2 cut(s)	114, 224
BseSI	GKGCMC	1 cut(s)	381
BseXI	GCAGC	1 cut(s)	783
BseYI	CCCAGC	1 cut(s)	53
BshFI	GGCC	4 cut(s)	5, 194, 262, 797
BshNI	GGYRCC	1 cut(s)	378
BsiSI	CCGG	2 cut(s)	375, 502
BslFI	GGGAC	2 cut(s)	316, 1005
BslI	CCNNNNNNNGG	2 cut(s)	389, 444
BsmFI	GGGAC	2 cut(s)	316, 1005
BsnI	GGCC	4 cut(s)	5, 194, 262, 797
Bsp119I	TTCGAA	1 cut(s)	803
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	8 cut(s)	235, 408, 484, 544, 855, 889, 971, 1030
Bsp19I	CCATGG	1 cut(s)	173
BspACI	CCGC	3 cut(s)	21, 272, 822
BspANI	GGCC	4 cut(s)	5, 194, 262, 797
BspCNI	CTCAG	3 cut(s)	394, 706, 1077
BspHI	TCATGA	1 cut(s)	411
BspLI	GGNNCC	2 cut(s)	380, 973
BspPI	GGATC	5 cut(s)	243, 416, 492, 966, 979
BspQI	GCTCTTC	2 cut(s)	75, 332
BspT104I	TTCGAA	1 cut(s)	803
BspT107I	GGYRCC	1 cut(s)	378
BsrDI	GCAATG	1 cut(s)	973
BsrI	ACTGG	2 cut(s)	293, 1051
BssECI	CCNNGG	3 cut(s)	173, 230, 986
BssMI	GATC	8 cut(s)	235, 408, 484, 544, 855, 889, 971, 1030
BssSI	CACGAG	1 cut(s)	791
BssT1I	CCWWGG	3 cut(s)	173, 230, 986
Bst2BI	CACGAG	1 cut(s)	791
Bst4CI	ACNGT	1 cut(s)	851
Bst6I	CTCTTC	3 cut(s)	75, 332, 863
BstBI	TTCGAA	1 cut(s)	803
BstC8I	GCNNGC	2 cut(s)	622, 824
BstDEI	CTNAG	3 cut(s)	402, 693, 1064
BstDSI	CCRYGG	1 cut(s)	173
BstENI	CCTNNNNNAGG	1 cut(s)	387
BstF5I	GGATG	2 cut(s)	71, 604
BstKTI	GATC	8 cut(s)	238, 411, 487, 547, 858, 892, 974, 1033
BstMBI	GATC	8 cut(s)	235, 408, 484, 544, 855, 889, 971, 1030
BstNSI	RCATGY	1 cut(s)	685
BstSCI	CCNGG	2 cut(s)	374, 501
BstSFI	CTRYAG	1 cut(s)	297
BstSLI	GKGCMC	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	783
BstX2I	RGATCY	1 cut(s)	971
BstYI	RGATCY	1 cut(s)	971
BsuRI	GGCC	4 cut(s)	5, 194, 262, 797
BtgI	CCRYGG	1 cut(s)	173
BtsCI	GGATG	2 cut(s)	71, 604
BtsIMutI	CAGTG	2 cut(s)	144, 863
Cac8I	GCNNGC	2 cut(s)	622, 824
CaiI	CAGNNNCTG	1 cut(s)	305
CciI	TCATGA	1 cut(s)	411
Csp6I	GTAC	2 cut(s)	166, 450
CviAII	CATG	5 cut(s)	174, 412, 606, 682, 976
CviQI	GTAC	2 cut(s)	166, 450
DdeI	CTNAG	3 cut(s)	402, 693, 1064
DpnI	GATC	8 cut(s)	237, 410, 486, 546, 857, 891, 973, 1032
DpnII	GATC	8 cut(s)	235, 408, 484, 544, 855, 889, 971, 1030
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	75, 332, 863
EarI	CTCTTC	3 cut(s)	75, 332, 863
Eco130I	CCWWGG	3 cut(s)	173, 230, 986
Eco147I	AGGCCT	2 cut(s)	194, 262
Eco57I	CTGAAG	2 cut(s)	887, 900
EcoNI	CCTNNNNNAGG	1 cut(s)	387
EcoT14I	CCWWGG	3 cut(s)	173, 230, 986
ErhI	CCWWGG	3 cut(s)	173, 230, 986
FaeI	CATG	5 cut(s)	177, 415, 609, 685, 979
FaqI	GGGAC	2 cut(s)	316, 1005
FatI	CATG	5 cut(s)	173, 411, 605, 681, 975
FauI	CCCGC	1 cut(s)	815
FbaI	TGATCA	2 cut(s)	855, 889
Fnu4HI	GCNGC	2 cut(s)	273, 772
FokI	GGATG	2 cut(s)	58, 611
Fsp4HI	GCNGC	2 cut(s)	273, 772
FspBI	CTAG	3 cut(s)	561, 627, 995
GluI	GCNGC	2 cut(s)	273, 772
GsaI	CCCAGC	1 cut(s)	57
HaeIII	GGCC	4 cut(s)	5, 194, 262, 797
HapII	CCGG	2 cut(s)	375, 502
Hin1II	CATG	5 cut(s)	177, 415, 609, 685, 979
HindIII	AAGCTT	1 cut(s)	733
HinfI	GANTC	2 cut(s)	31, 982
HpaII	CCGG	2 cut(s)	375, 502
HphI	GGTGA	3 cut(s)	59, 361, 884
Hpy166II	GTNNAC	2 cut(s)	94, 787
Hpy188I	TCNGA	4 cut(s)	76, 203, 240, 696
Hpy188III	TCNNGA	4 cut(s)	412, 643, 740, 1058
Hpy8I	GTNNAC	2 cut(s)	94, 787
Hpy99I	CGWCG	2 cut(s)	80, 906
HpyAV	CCTTC	3 cut(s)	50, 286, 875
HpyCH4III	ACNGT	1 cut(s)	851
HpyCH4IV	ACGT	1 cut(s)	901
HpyCH4V	TGCA	4 cut(s)	519, 771, 917, 1089
HpyF3I	CTNAG	3 cut(s)	402, 693, 1064
HpySE526I	ACGT	1 cut(s)	901
Hsp92II	CATG	5 cut(s)	177, 415, 609, 685, 979
Ksp22I	TGATCA	2 cut(s)	855, 889
Kzo9I	GATC	8 cut(s)	235, 408, 484, 544, 855, 889, 971, 1030
LguI	GCTCTTC	2 cut(s)	75, 332
LmnI	GCTCC	2 cut(s)	178, 1010
Lsp1109I	GCAGC	1 cut(s)	783
LweI	GCATC	1 cut(s)	351
MaeI	CTAG	3 cut(s)	561, 627, 995
MaeII	ACGT	1 cut(s)	901
MaeIII	GTNAC	4 cut(s)	112, 284, 578, 935
MalI	GATC	8 cut(s)	237, 410, 486, 546, 857, 891, 973, 1032
MboI	GATC	8 cut(s)	235, 408, 484, 544, 855, 889, 971, 1030
MboII	GAAGA	8 cut(s)	92, 214, 349, 364, 554, 831, 880, 940
MflI	RGATCY	1 cut(s)	971
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	2 cut(s)	149, 799
MmeI	TCCRAC	2 cut(s)	99, 462
MseI	TTAA	4 cut(s)	396, 813, 1023, 1073
MslI	CAYNNNNRTG	2 cut(s)	347, 635
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	2 cut(s)	375, 502
MspR9I	CCNGG	2 cut(s)	376, 503
NciI	CCSGG	2 cut(s)	376, 503
NcoI	CCATGG	1 cut(s)	173
NdeII	GATC	8 cut(s)	235, 408, 484, 544, 855, 889, 971, 1030
NlaIII	CATG	5 cut(s)	177, 415, 609, 685, 979
NlaIV	GGNNCC	2 cut(s)	380, 973
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	112
NspI	RCATGY	1 cut(s)	685
NspV	TTCGAA	1 cut(s)	803
PagI	TCATGA	1 cut(s)	411
PceI	AGGCCT	2 cut(s)	194, 262
PciI	ACATGT	1 cut(s)	681
PciSI	GCTCTTC	2 cut(s)	75, 332
PfeI	GAWTC	2 cut(s)	31, 982
PflMI	CCANNNNNTGG	1 cut(s)	444
PkrI	GCNGC	2 cut(s)	274, 773
PscI	ACATGT	1 cut(s)	681
PsiI	TTATAA	1 cut(s)	567
PspFI	CCCAGC	1 cut(s)	53
PspN4I	GGNNCC	2 cut(s)	380, 973
PstNI	CAGNNNCTG	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	971
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	2 cut(s)	167, 451
RsaNI	GTAC	2 cut(s)	166, 450
RseI	CAYNNNNRTG	2 cut(s)	347, 635
SapI	GCTCTTC	2 cut(s)	75, 332
SaqAI	TTAA	4 cut(s)	396, 813, 1023, 1073
SatI	GCNGC	2 cut(s)	273, 772
Sau3AI	GATC	8 cut(s)	235, 408, 484, 544, 855, 889, 971, 1030
ScaI	AGTACT	1 cut(s)	451
ScrFI	CCNGG	2 cut(s)	376, 503
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	1 cut(s)	351
SfcI	CTRYAG	1 cut(s)	297
SfuI	TTCGAA	1 cut(s)	803
SmiMI	CAYNNNNRTG	2 cut(s)	347, 635
Sse9I	AATT	2 cut(s)	149, 799
SseBI	AGGCCT	2 cut(s)	194, 262
SsiI	CCGC	3 cut(s)	21, 272, 822
SspI	AATATT	1 cut(s)	553
SspMI	CTAG	3 cut(s)	561, 627, 995
StuI	AGGCCT	2 cut(s)	194, 262
StyD4I	CCNGG	2 cut(s)	374, 501
StyI	CCWWGG	3 cut(s)	173, 230, 986
TaaI	ACNGT	1 cut(s)	851
TaiI	ACGT	1 cut(s)	904
TaqI	TCGA	3 cut(s)	61, 508, 803
TasI	AATT	2 cut(s)	149, 799
TatI	WGTACW	2 cut(s)	165, 449
TauI	GCSGC	1 cut(s)	275
TfiI	GAWTC	2 cut(s)	31, 982
Tru1I	TTAA	4 cut(s)	396, 813, 1023, 1073
Tru9I	TTAA	4 cut(s)	396, 813, 1023, 1073
TscAI	CASTG	2 cut(s)	151, 870
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	1 cut(s)	771
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	4 cut(s)	108, 428, 615, 995
TspRI	CASTG	2 cut(s)	151, 870
Van91I	CCANNNNNTGG	1 cut(s)	444
XagI	CCTNNNNNAGG	1 cut(s)	387
XceI	RCATGY	1 cut(s)	685
XspI	CTAG	3 cut(s)	561, 627, 995
ZrmI	AGTACT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.