RLG00000024355
NAC Family

NAC transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0015653
Physical Location & Seq
Forward (+)
35064483 .. 35067314
2832 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024355

Sequence Viewer

Length: 1074 bp
ATGGCCGAGATGGAACAAACCATTGAGAATCACAACATTCAACTTCCTGCTGGGTTTCGATTTCACCCATCCGACGAAGAGCTTATCGTCCACTACTTGATAAACAAAGTCACTTCATCTCCTCTACCGGCAACCATCATCACTGAATTGGACCTATACAAGTATAATCCATGGGAGCTACCACCAAAGGCCTTGTTCGGAGAAGAGGAGTGGTATTTCTTCACTCCAAGGGATCGGAAGTACCCGAATGGAACCAGGCCTAATAGGGCAGCTGGTTTGGGTTACTGGAAGGCTACAGGGACTGATAAGCATATTTTCAGTTCTTGTGGAACGAAAAGCATTGGGGTGAAGAAGGCACTTGTATTTTATACAGGGCATCCTCCAAAAGGTGTTAAGACTGACTGGATCATGAACGAGTATAGATTGCTTGACACCACTATTTGGAGTACTACTTCAAAGCAAAAAGGGTCTATGAGGTTGGATGATTGGGTTCTATGCCGGGTTCGCCAAAAATGCAACAATAGCAGGAACATCTGGGAAGATCAAAACACTACTCCTAGTTATAAACTATCTGGCCACTTTAGACAAGGGGTGGATGAACAGGAAGCAAGCCCTAGCATCGAAATGGTCAGGAGTTATCTATACAAAGACTGTCCAATGTTACCCTACATTTTCACCTCTCAGAAAGTGCTTCCTACCATCAAAACCACTTCAAGTATAAGCTTTCAGGACACTACTGAAAATAGAAAATCTTGCAGCCCTACTCCTGTTTACCAAGAGGCCGATTCGAATAAAATCAACAATGTTGGGAAATTTTTAGTTTCTTCCCTCGACAGTTTGATCAACCCACTGAAGAGAAAGCCTGAAGGAAATGATCAACGTCGGTCTTCGGTTGCACCCAGCAAGAAGATATGTAACAGAGACGATCAAAAGGAGGAAATTAGTAATGGATCTATGATCAATCCTTGGGGAATAGATAACCAGTTTGGAGCTGACAGTTTCAATGCAGATCAATGGAGTTCCATGATCCAGTATCAAGAACTCAGTCAGTTAATTGGGTTTCCCTGCAACTGA

Protein Analysis

358

Amino Acids

40.87

Weight (kDa)

8.05

Isoelectric Point (pI)

45.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 16 - 142 3.8e-47 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015653)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15670
malus_domestica MD04G1100400.v1.1
prunus_persica Prupe.6G238600_v2.0.a1
pyrus_communis pycom04g09540
rosa_chinensis RchiOBHm_Chr3g0469371
rosa_laevigata RLG00000024355
rosa_multiflora Rmu_co8391809.1_g000001 Rmu_sc0013046.1_g000008 Rmu_sc0013047.1_g000009
rosa_roxburghii Rroxscaffold_6G00411950
rosa_rugosa Rorug03G0101000
rosa_samantha Rh3AG150200 Rh3BG173900 Rh3CG164900 Rh3DG201600
rosa_wichuraiana Rw3G014160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 564
AccB7I CCANNNNNTGG 1 cut(s) 441
AclWI GGATC 4 cut(s) 240, 413, 958, 1021
AcoI YGGCCR 2 cut(s) 3, 574
AcsI RAATTY 1 cut(s) 812
AcuI CTGAAG 2 cut(s) 872, 885
AfaI GTAC 2 cut(s) 242, 448
AfiI CCNNNNNNNGG 2 cut(s) 386, 441
AgsI TTSAA 4 cut(s) 41, 456, 714, 1003
AjnI CCWGG 1 cut(s) 254
AluBI AGCT 5 cut(s) 82, 178, 272, 723, 992
AluI AGCT 5 cut(s) 82, 178, 272, 723, 992
Alw26I GTCTC 1 cut(s) 915
AlwI GGATC 4 cut(s) 240, 413, 958, 1021
AlwNI CAGNNNCTG 1 cut(s) 302
AoxI GGCC 5 cut(s) 3, 189, 257, 574, 780
ApeKI GCWGC 2 cut(s) 269, 756
ApoI RAATTY 1 cut(s) 812
AspS9I GGNCC 1 cut(s) 151
AsuC2I CCSGG 1 cut(s) 500
AsuHPI GGTGA 3 cut(s) 56, 358, 667
AsuII TTCGAA 1 cut(s) 788
AvaII GGWCC 1 cut(s) 151
BalI TGGCCA 1 cut(s) 576
BbsI GAAGAC 1 cut(s) 879
BbvI GCAGC 2 cut(s) 281, 768
BccI CCATC 4 cut(s) 4, 76, 143, 707
BciT130I CCWGG 1 cut(s) 256
BclI TGATCA 3 cut(s) 840, 874, 957
BcnI CCSGG 1 cut(s) 500
BcoDI GTCTC 1 cut(s) 915
BfaI CTAG 2 cut(s) 558, 615
BfmI CTRYAG 1 cut(s) 294
BisI GCNGC 2 cut(s) 270, 757
BlsI GCNGC 2 cut(s) 271, 758
BmcAI AGTACT 1 cut(s) 448
Bme1390I CCNGG 2 cut(s) 256, 500
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 2 cut(s) 256, 500
BmsI GCATC 2 cut(s) 385, 627
BpiI GAAGAC 1 cut(s) 879
Bpu14I TTCGAA 1 cut(s) 788
BpuMI CCSGG 1 cut(s) 500
BsaJI CCNNGG 3 cut(s) 170, 227, 965
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bsc4I CCNNNNNNNGG 2 cut(s) 386, 441
Bse118I RCCGGY 1 cut(s) 127
Bse1I ACTGG 4 cut(s) 290, 407, 982, 1030
BseBI CCWGG 1 cut(s) 256
BseDI CCNNGG 3 cut(s) 170, 227, 965
BseGI GGATG 4 cut(s) 68, 376, 487, 601
BseLI CCNNNNNNNGG 2 cut(s) 386, 441
BseMII CTCAG 2 cut(s) 695, 1057
BseNI ACTGG 4 cut(s) 290, 407, 982, 1030
BseRI GAGGAG 2 cut(s) 111, 221
BseXI GCAGC 2 cut(s) 281, 768
BseYI CCCAGC 2 cut(s) 50, 899
BshFI GGCC 5 cut(s) 5, 191, 259, 576, 782
BsiSI CCGG 2 cut(s) 128, 499
BslFI GGGAC 1 cut(s) 313
BslI CCNNNNNNNGG 2 cut(s) 386, 441
BsmAI GTCTC 1 cut(s) 915
BsmBI CGTCTC 1 cut(s) 915
BsmFI GGGAC 1 cut(s) 313
BsnI GGCC 5 cut(s) 5, 191, 259, 576, 782
Bsp119I TTCGAA 1 cut(s) 788
Bsp19I CCATGG 1 cut(s) 170
BspANI GGCC 5 cut(s) 5, 191, 259, 576, 782
BspCNI CTCAG 2 cut(s) 694, 1056
BspHI TCATGA 1 cut(s) 408
BspLI GGNNCC 1 cut(s) 253
BspPI GGATC 4 cut(s) 240, 413, 958, 1021
BspQI GCTCTTC 1 cut(s) 72
BspT104I TTCGAA 1 cut(s) 788
BsrFI RCCGGY 1 cut(s) 127
BsrI ACTGG 4 cut(s) 290, 407, 982, 1030
BssAI RCCGGY 1 cut(s) 127
BssECI CCNNGG 3 cut(s) 170, 227, 965
BssT1I CCWWGG 3 cut(s) 170, 227, 965
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 3 cut(s) 653, 836, 998
Bst6I CTCTTC 3 cut(s) 72, 198, 848
BstBI TTCGAA 1 cut(s) 788
BstC8I GCNNGC 1 cut(s) 610
BstDEI CTNAG 2 cut(s) 681, 1043
BstDSI CCRYGG 1 cut(s) 170
BstENI CCTNNNNNAGG 1 cut(s) 384
BstF5I GGATG 4 cut(s) 68, 376, 487, 601
BstMAI GTCTC 1 cut(s) 915
BstMWI GCNNNNNNNGC 3 cut(s) 504, 513, 522
BstNI CCWGG 1 cut(s) 256
BstSCI CCNGG 2 cut(s) 254, 498
BstSFI CTRYAG 1 cut(s) 294
BstV1I GCAGC 2 cut(s) 281, 768
BstV2I GAAGAC 1 cut(s) 879
BstX2I RGATCY 1 cut(s) 950
BstYI RGATCY 1 cut(s) 950
BsuRI GGCC 5 cut(s) 5, 191, 259, 576, 782
BtgI CCRYGG 1 cut(s) 170
BtsCI GGATG 4 cut(s) 68, 376, 487, 601
BtsIMutI CAGTG 2 cut(s) 141, 848
Cac8I GCNNGC 1 cut(s) 610
CaiI CAGNNNCTG 1 cut(s) 302
CciI TCATGA 1 cut(s) 408
Cfr10I RCCGGY 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 151
Csp6I GTAC 2 cut(s) 241, 447
CviAII CATG 3 cut(s) 171, 409, 1024
CviQI GTAC 2 cut(s) 241, 447
DdeI CTNAG 2 cut(s) 681, 1043
EaeI YGGCCR 2 cut(s) 3, 574
Eam1104I CTCTTC 3 cut(s) 72, 198, 848
EarI CTCTTC 3 cut(s) 72, 198, 848
Eco130I CCWWGG 3 cut(s) 170, 227, 965
Eco147I AGGCCT 2 cut(s) 191, 259
Eco47I GGWCC 1 cut(s) 151
Eco57I CTGAAG 2 cut(s) 872, 885
EcoNI CCTNNNNNAGG 1 cut(s) 384
EcoRII CCWGG 1 cut(s) 254
EcoT14I CCWWGG 3 cut(s) 170, 227, 965
ErhI CCWWGG 3 cut(s) 170, 227, 965
Esp3I CGTCTC 1 cut(s) 915
FaeI CATG 3 cut(s) 174, 412, 1027
FaqI GGGAC 1 cut(s) 313
FatI CATG 3 cut(s) 170, 408, 1023
FbaI TGATCA 3 cut(s) 840, 874, 957
Fnu4HI GCNGC 2 cut(s) 270, 757
FokI GGATG 4 cut(s) 55, 363, 494, 608
Fsp4HI GCNGC 2 cut(s) 270, 757
FspBI CTAG 2 cut(s) 558, 615
GluI GCNGC 2 cut(s) 270, 757
GsaI CCCAGC 2 cut(s) 54, 903
HaeIII GGCC 5 cut(s) 5, 191, 259, 576, 782
HapII CCGG 2 cut(s) 128, 499
Hin1II CATG 3 cut(s) 174, 412, 1027
HindIII AAGCTT 1 cut(s) 721
HinfI GANTC 2 cut(s) 28, 785
HpaII CCGG 2 cut(s) 128, 499
HphI GGTGA 3 cut(s) 56, 358, 667
Hpy166II GTNNAC 2 cut(s) 91, 772
Hpy188I TCNGA 4 cut(s) 73, 200, 237, 684
Hpy188III TCNNGA 4 cut(s) 409, 631, 728, 1037
Hpy8I GTNNAC 2 cut(s) 91, 772
Hpy99I CGWCG 2 cut(s) 77, 885
HpyAV CCTTC 3 cut(s) 283, 346, 860
HpyCH4III ACNGT 3 cut(s) 653, 836, 998
HpyCH4IV ACGT 1 cut(s) 880
HpyCH4V TGCA 5 cut(s) 516, 756, 896, 1007, 1068
HpyF10VI GCNNNNNNNGC 3 cut(s) 504, 513, 522
HpyF3I CTNAG 2 cut(s) 681, 1043
HpySE526I ACGT 1 cut(s) 880
Hsp92II CATG 3 cut(s) 174, 412, 1027
Ksp22I TGATCA 3 cut(s) 840, 874, 957
LguI GCTCTTC 1 cut(s) 72
LmnI GCTCC 2 cut(s) 175, 989
Lsp1109I GCAGC 2 cut(s) 281, 768
LweI GCATC 2 cut(s) 385, 627
MaeI CTAG 2 cut(s) 558, 615
MaeII ACGT 1 cut(s) 880
MaeIII GTNAC 4 cut(s) 109, 281, 660, 914
MboII GAAGA 9 cut(s) 89, 211, 215, 361, 551, 816, 865, 879, 919
MflI RGATCY 1 cut(s) 950
MlsI TGGCCA 1 cut(s) 576
MluCI AATT 4 cut(s) 146, 812, 939, 1053
MluNI TGGCCA 1 cut(s) 576
MmeI TCCRAC 2 cut(s) 96, 459
MnlI CCTC 8 cut(s) 132, 199, 390, 468, 688, 772, 839, 928
Mox20I TGGCCA 1 cut(s) 576
MscI TGGCCA 1 cut(s) 576
MseI TTAA 2 cut(s) 393, 1052
MslI CAYNNNNRTG 2 cut(s) 344, 623
Msp20I TGGCCA 1 cut(s) 576
MspA1I CMGCKG 1 cut(s) 272
MspI CCGG 2 cut(s) 128, 499
MspR9I CCNGG 2 cut(s) 256, 500
MvaI CCWGG 1 cut(s) 256
MwoI GCNNNNNNNGC 3 cut(s) 504, 513, 522
NciI CCSGG 1 cut(s) 500
NcoI CCATGG 1 cut(s) 170
NlaIII CATG 3 cut(s) 174, 412, 1027
NlaIV GGNNCC 1 cut(s) 253
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 109
NspV TTCGAA 1 cut(s) 788
PagI TCATGA 1 cut(s) 408
PceI AGGCCT 2 cut(s) 191, 259
PciSI GCTCTTC 1 cut(s) 72
PfeI GAWTC 2 cut(s) 28, 785
PflMI CCANNNNNTGG 1 cut(s) 441
PkrI GCNGC 2 cut(s) 271, 758
PsiI TTATAA 1 cut(s) 564
Psp6I CCWGG 1 cut(s) 254
PspFI CCCAGC 2 cut(s) 50, 899
PspGI CCWGG 1 cut(s) 254
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 1 cut(s) 151
PstNI CAGNNNCTG 1 cut(s) 302
PsuI RGATCY 1 cut(s) 950
PvuII CAGCTG 1 cut(s) 272
RsaI GTAC 2 cut(s) 242, 448
RsaNI GTAC 2 cut(s) 241, 447
RseI CAYNNNNRTG 2 cut(s) 344, 623
SapI GCTCTTC 1 cut(s) 72
SaqAI TTAA 2 cut(s) 393, 1052
SatI GCNGC 2 cut(s) 270, 757
Sau96I GGNCC 1 cut(s) 151
ScaI AGTACT 1 cut(s) 448
ScrFI CCNGG 2 cut(s) 256, 500
SfaNI GCATC 2 cut(s) 385, 627
SfcI CTRYAG 1 cut(s) 294
SfuI TTCGAA 1 cut(s) 788
SinI GGWCC 1 cut(s) 151
SmiMI CAYNNNNRTG 2 cut(s) 344, 623
Sse9I AATT 4 cut(s) 146, 812, 939, 1053
SseBI AGGCCT 2 cut(s) 191, 259
SspMI CTAG 2 cut(s) 558, 615
StuI AGGCCT 2 cut(s) 191, 259
StyD4I CCNGG 2 cut(s) 254, 498
StyI CCWWGG 3 cut(s) 170, 227, 965
TaaI ACNGT 3 cut(s) 653, 836, 998
TaiI ACGT 1 cut(s) 883
TaqI TCGA 4 cut(s) 58, 621, 788, 831
TaqII GACCGA 1 cut(s) 873
TasI AATT 4 cut(s) 146, 812, 939, 1053
TatI WGTACW 1 cut(s) 446
TfiI GAWTC 2 cut(s) 28, 785
Tru1I TTAA 2 cut(s) 393, 1052
Tru9I TTAA 2 cut(s) 393, 1052
TscAI CASTG 2 cut(s) 148, 855
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 2 cut(s) 269, 756
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 3 cut(s) 105, 425, 612
TspRI CASTG 2 cut(s) 148, 855
Van91I CCANNNNNTGG 1 cut(s) 441
VpaK11BI GGWCC 1 cut(s) 151
XagI CCTNNNNNAGG 1 cut(s) 384
XapI RAATTY 1 cut(s) 812
XspI CTAG 2 cut(s) 558, 615
ZrmI AGTACT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.