Rorug03G0101000
NAC Family

NAC transcription factor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
7903614 .. 7907117
3504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0101000.1

Sequence Viewer

Length: 1644 bp
ATGTGCCTTCCTGGTACTGAATCTCGAGGAATTATAAATGGTCACGACCCTCTGATTCCGAAGCTAGATGGAGGAGGAGACTATAACAATGAAGAAGAGTACATGACAATGAGGTCAGATAGAAGTGAAGGTGGCCGCAGCAGCAGCACTAGCTTCATACAAAACCTCCGTCAACGGCTACAGCAGCAGCTTCCCACAAATGGGCTTCTCGGACGGCTGCCACTAACCGAGATAGGAGAAGAGTTACGGTCGCTGATAAAGATTGGAGGTCCAATAGTGATAACATCCCTACTTATATATTCAAGGTCTGTAATTTCAATGCTCTTCTTAGGTCGTCTTGGAAAAGCAGAGTTGGCCGGAGGCTCATTAGCACTTGGGTTTGGAAATATTACAGGCATCTCAATCCTCAGAGGGCTATGTACTGGTATGGACCCAATCTGTTGCCAAGCTTATGGAGCTCAAAGATGGACAGTTCTCAGCCAAACCTTCCAGAAAACCCTTTGTCTCCTTCTATTAGTTTCCATACCCATCTCATTCGCGTGGCTCAATATTGAGCCAATTTTCCTATGGTTAGGTCAAGACCCACAGATTACAAGAGTTGCTAGGGTTTACATGGTTTGCTCAATCCCTGAATTGCTAGCTCAAGCTCACCTCAACCCATTGAGAGTCTTCTTAAGAACTCAAGGCCTTACCGCCCCACTTACTTTAGCTGCATGTTTCTCGGCCCTCATGCACTTACCCATCAACTATTTTTTAGTCTCTTACTTGAATTTGGGGGTGGAAGGTGTTGCTTTGGGACTTGCTTGGAACACTTGGAATTTGAATGTGGGATTGGTGATTTATCTAGCTATCTCAAATAGAGCATTGAAACCTTGGAGTGGGCTCACAATTGTCTCTACGTTTCAAGGATGGAGACCGTTGCTAAGTTTAGCACTACCCAGTTGCGTTTCAGTGTGCTTGGAATGGTGGTGGTATGAAATTATGTTGTTCCTCTGTGGCATTTTGAGTAACCCACAAGCTAGTGTTGCAGCAATGGGTATCCTAATTCAAACAACAGGAATGTTATACATCTTTCCAATTTCGTTAAGTGCCGCCTTGTCAACTAGGGTTGGACATTCCTTGGGGGCGGGGCAACCCAGCCAAGCCCGATGGGCTGCCCTAATCGGTCTTCTTGTCGCGTTTGCTTTTGGGCTCTTCGCATTTGTTTTCATGACTTCTGTGAGGAATGTGTGGGGGACTATGTTCACAAATGAACCACAAATTCTTGAACTGATTTCAACGGCACTTCCAATCTTGGGGCTATGTGAACTTGGCAACACTCCTCAGACAGCTGCATGTGGAGTCTTGACAGGTACTGCACGACCTAAGCTTGGAGCGAGAATTAACTTGTATTCATTTTACCTTATTGGATTGCCAGTTGCTATTATTGCAACTTTTACATATAAAGTTGGGTTTTTGGGGCTGTGGCTTGGGTTACTATCAGCACAGGCTTCTTGTGTGTGTATGATGGTGTACACACTGGTTCACACAGATTGGAAGCACCAAACTAGAAGAGCTGAGGAGCTTACTCTGGCTGTGGTAGAGACTAATATTGAAGAGAAAGATGATGAAGAAAGTGGCCCGCTAACTCCTTCTGATCTCTGA

Protein Analysis

547

Amino Acids

59.7

Weight (kDa)

6.97

Isoelectric Point (pI)

45.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 91 - 251 2.7e-35 MatE
MatE PF01554 313 - 476 1.9e-34 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015653)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 35
AasI GACNNNNNNGTC 1 cut(s) 112
AccII CGCG 2 cut(s) 539, 1178
AciI CCGC 5 cut(s) 136, 693, 1092, 1127, 1622
AcoI YGGCCR 2 cut(s) 133, 354
AcsI RAATTY 3 cut(s) 769, 817, 1260
AfaI GTAC 5 cut(s) 16, 101, 421, 1354, 1514
AfiI CCNNNNNNNGG 5 cut(s) 200, 201, 878, 1295, 1370
AflII CTTAAG 1 cut(s) 673
AjnI CCWGG 1 cut(s) 10
AjuI GAANNNNNNNTTGG 2 cut(s) 815, 847
Alw21I GWGCWC 1 cut(s) 460
Alw26I GTCTC 6 cut(s) 72, 509, 763, 898, 907, 1577
AlwNI CAGNNNCTG 1 cut(s) 1355
Ama87I CYCGRG 1 cut(s) 24
AoxI GGCC 5 cut(s) 133, 354, 685, 723, 1618
ApoI RAATTY 3 cut(s) 769, 817, 1260
ArsI GACNNNNNNTTYG 2 cut(s) 154, 186
AspS9I GGNCC 4 cut(s) 269, 430, 724, 1619
AsuHPI GGTGA 2 cut(s) 641, 847
AsuNHI GCTAGC 1 cut(s) 637
AvaI CYCGRG 1 cut(s) 24
AvaII GGWCC 2 cut(s) 269, 430
BanII GRGCYC 3 cut(s) 460, 885, 1194
BbsI GAAGAC 2 cut(s) 661, 1160
Bbv12I GWGCWC 1 cut(s) 460
BbvCI CCTCAGC 1 cut(s) 1557
BccI CCATC 7 cut(s) 62, 459, 536, 749, 903, 1143, 1501
BceAI ACGGC 3 cut(s) 191, 230, 1296
BcgI CGANNNNNNTGC 2 cut(s) 702, 736
BciT130I CCWGG 1 cut(s) 12
BciVI GTATCC 1 cut(s) 1049
BcoDI GTCTC 6 cut(s) 72, 509, 763, 898, 907, 1577
BfaI CTAG 8 cut(s) 65, 150, 603, 638, 845, 1020, 1104, 1548
BfmI CTRYAG 1 cut(s) 179
BfrI CTTAAG 1 cut(s) 673
BfuI GTATCC 1 cut(s) 1049
BglI GCCNNNNNGGC 1 cut(s) 1151
Bme1390I CCNGG 1 cut(s) 12
Bme18I GGWCC 2 cut(s) 269, 430
BmeT110I CYCGRG 1 cut(s) 24
BmgT120I GGNCC 4 cut(s) 269, 430, 724, 1619
BmiI GGNNCC 1 cut(s) 432
BmrFI CCNGG 1 cut(s) 12
BmrI ACTGGG 1 cut(s) 933
BmsI GCATC 1 cut(s) 405
BmtI GCTAGC 1 cut(s) 641
BmuI ACTGGG 1 cut(s) 933
BpiI GAAGAC 2 cut(s) 661, 1160
Bpu10I CCTNAGC 2 cut(s) 1365, 1557
BpuEI CTTGAG 2 cut(s) 627, 666
BsaI GGTCTC 1 cut(s) 907
BsaJI CCNNGG 2 cut(s) 872, 1119
BsaXI ACNNNNNCTCC 2 cut(s) 150, 180
Bsc4I CCNNNNNNNGG 5 cut(s) 200, 201, 878, 1295, 1370
Bse1I ACTGG 4 cut(s) 427, 939, 1415, 1524
Bse3DI GCAATG 1 cut(s) 1038
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 2 cut(s) 872, 1119
BseGI GGATG 2 cut(s) 284, 914
BseLI CCNNNNNNNGG 5 cut(s) 200, 201, 878, 1295, 1370
BseMI GCAATG 1 cut(s) 1038
BseMII CTCAG 4 cut(s) 421, 490, 1337, 1548
BseNI ACTGG 4 cut(s) 427, 939, 1415, 1524
BseRI GAGGAG 4 cut(s) 87, 90, 1311, 1574
BseYI CCCAGC 1 cut(s) 1136
BsgI GTGCAG 1 cut(s) 1341
Bsh1236I CGCG 2 cut(s) 539, 1178
Bsh1285I CGRYCG 1 cut(s) 251
BshFI GGCC 5 cut(s) 135, 356, 687, 725, 1620
BsiEI CGRYCG 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 460
BsiHKCI CYCGRG 1 cut(s) 24
BsiSI CCGG 1 cut(s) 357
BslFI GGGAC 2 cut(s) 810, 1249
BslI CCNNNNNNNGG 5 cut(s) 200, 201, 878, 1295, 1370
BsmAI GTCTC 6 cut(s) 72, 509, 763, 898, 907, 1577
BsmFI GGGAC 2 cut(s) 810, 1249
BsnI GGCC 5 cut(s) 135, 356, 687, 725, 1620
Bso31I GGTCTC 1 cut(s) 907
BsoBI CYCGRG 1 cut(s) 24
Bsp1286I GDGCHC 3 cut(s) 460, 885, 1194
Bsp1407I TGTACA 1 cut(s) 1512
Bsp143I GATC 1 cut(s) 1636
BspACI CCGC 5 cut(s) 136, 693, 1092, 1127, 1622
BspANI GGCC 5 cut(s) 135, 356, 687, 725, 1620
BspCNI CTCAG 4 cut(s) 420, 489, 1336, 1549
BspFNI CGCG 2 cut(s) 539, 1178
BspHI TCATGA 1 cut(s) 1209
BspLI GGNNCC 1 cut(s) 432
BspOI GCTAGC 1 cut(s) 641
BspQI GCTCTTC 3 cut(s) 329, 1199, 1546
BspTI CTTAAG 1 cut(s) 673
BspTNI GGTCTC 1 cut(s) 907
BsrDI GCAATG 1 cut(s) 1038
BsrGI TGTACA 1 cut(s) 1512
BsrI ACTGG 4 cut(s) 427, 939, 1415, 1524
BssECI CCNNGG 2 cut(s) 872, 1119
BssMI GATC 1 cut(s) 1636
BssT1I CCWWGG 2 cut(s) 872, 1119
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 3 cut(s) 249, 472, 918
Bst6I CTCTTC 6 cut(s) 90, 234, 329, 1199, 1546, 1590
BstAFI CTTAAG 1 cut(s) 673
BstAUI TGTACA 1 cut(s) 1512
BstC8I GCNNGC 2 cut(s) 639, 1622
BstDEI CTNAG 7 cut(s) 328, 407, 476, 923, 1323, 1365, 1557
BstF5I GGATG 2 cut(s) 284, 914
BstFNI CGCG 2 cut(s) 539, 1178
BstKTI GATC 1 cut(s) 1639
BstMAI GTCTC 6 cut(s) 72, 509, 763, 898, 907, 1577
BstMBI GATC 1 cut(s) 1636
BstMCI CGRYCG 1 cut(s) 251
BstMWI GCNNNNNNNGC 9 cut(s) 141, 144, 150, 184, 353, 455, 1025, 1151, 1427
BstNI CCWGG 1 cut(s) 12
BstNSI RCATGY 2 cut(s) 717, 1338
BstSCI CCNGG 1 cut(s) 10
BstSFI CTRYAG 1 cut(s) 179
BstUI CGCG 2 cut(s) 539, 1178
BstV2I GAAGAC 2 cut(s) 661, 1160
BstXI CCANNNNNNTGG 1 cut(s) 452
BsuI GTATCC 1 cut(s) 1049
BsuRI GGCC 5 cut(s) 135, 356, 687, 725, 1620
BtsCI GGATG 2 cut(s) 284, 914
BtsIMutI CAGTG 2 cut(s) 957, 1517
Cac8I GCNNGC 2 cut(s) 639, 1622
CaiI CAGNNNCTG 1 cut(s) 1355
CciI TCATGA 1 cut(s) 1209
Cfr13I GGNCC 4 cut(s) 269, 430, 724, 1619
Csp6I GTAC 5 cut(s) 15, 100, 420, 1353, 1513
CviAII CATG 6 cut(s) 103, 613, 714, 730, 1210, 1335
CviQI GTAC 5 cut(s) 15, 100, 420, 1353, 1513
DdeI CTNAG 7 cut(s) 328, 407, 476, 923, 1323, 1365, 1557
DpnI GATC 1 cut(s) 1638
DpnII GATC 1 cut(s) 1636
DrdI GACNNNNNNGTC 1 cut(s) 112
DseDI GACNNNNNNGTC 1 cut(s) 112
EaeI YGGCCR 2 cut(s) 133, 354
Eam1104I CTCTTC 6 cut(s) 90, 234, 329, 1199, 1546, 1590
EarI CTCTTC 6 cut(s) 90, 234, 329, 1199, 1546, 1590
Ecl136II GAGCTC 1 cut(s) 458
Eco130I CCWWGG 2 cut(s) 872, 1119
Eco147I AGGCCT 1 cut(s) 687
Eco24I GRGCYC 3 cut(s) 460, 885, 1194
Eco31I GGTCTC 1 cut(s) 907
Eco47I GGWCC 2 cut(s) 269, 430
Eco53kI GAGCTC 1 cut(s) 458
Eco88I CYCGRG 1 cut(s) 24
EcoICRI GAGCTC 1 cut(s) 458
EcoRII CCWGG 1 cut(s) 10
EcoT14I CCWWGG 2 cut(s) 872, 1119
EcoT38I GRGCYC 3 cut(s) 460, 885, 1194
ErhI CCWWGG 2 cut(s) 872, 1119
FaeI CATG 6 cut(s) 106, 616, 717, 733, 1213, 1338
FaqI GGGAC 2 cut(s) 810, 1249
FatI CATG 6 cut(s) 102, 612, 713, 729, 1209, 1334
FauI CCCGC 2 cut(s) 1120, 1629
FokI GGATG 2 cut(s) 271, 921
FriOI GRGCYC 3 cut(s) 460, 885, 1194
FspBI CTAG 8 cut(s) 65, 150, 603, 638, 845, 1020, 1104, 1548
GsaI CCCAGC 1 cut(s) 1140
HaeIII GGCC 5 cut(s) 135, 356, 687, 725, 1620
HapII CCGG 1 cut(s) 357
Hin1II CATG 6 cut(s) 106, 616, 717, 733, 1213, 1338
HincII GTYRAC 2 cut(s) 173, 1101
HindII GTYRAC 2 cut(s) 173, 1101
HindIII AAGCTT 2 cut(s) 447, 1367
HinfI GANTC 4 cut(s) 20, 55, 666, 1341
HpaII CCGG 1 cut(s) 357
HphI GGTGA 2 cut(s) 641, 847
Hpy166II GTNNAC 8 cut(s) 173, 610, 1101, 1245, 1307, 1513, 1515, 1525
Hpy188I TCNGA 8 cut(s) 54, 60, 118, 212, 410, 1326, 1636, 1643
Hpy188III TCNNGA 7 cut(s) 24, 44, 490, 578, 1210, 1265, 1345
Hpy8I GTNNAC 8 cut(s) 173, 610, 1101, 1245, 1307, 1513, 1515, 1525
HpyAV CCTTC 6 cut(s) 17, 122, 496, 518, 776, 1641
HpyCH4III ACNGT 3 cut(s) 249, 472, 918
HpyCH4IV ACGT 1 cut(s) 899
HpyCH4V TGCA 6 cut(s) 713, 733, 1028, 1334, 1358, 1430
HpyF10VI GCNNNNNNNGC 9 cut(s) 141, 144, 150, 184, 353, 455, 1025, 1151, 1427
HpyF3I CTNAG 7 cut(s) 328, 407, 476, 923, 1323, 1365, 1557
HpySE526I ACGT 1 cut(s) 899
Hsp92II CATG 6 cut(s) 106, 616, 717, 733, 1213, 1338
Kzo9I GATC 1 cut(s) 1636
LguI GCTCTTC 3 cut(s) 329, 1199, 1546
LmnI GCTCC 3 cut(s) 455, 1373, 1561
LweI GCATC 1 cut(s) 405
MaeI CTAG 8 cut(s) 65, 150, 603, 638, 845, 1020, 1104, 1548
MaeII ACGT 1 cut(s) 899
MaeIII GTNAC 4 cut(s) 41, 243, 1007, 1473
MalI GATC 1 cut(s) 1638
MboI GATC 1 cut(s) 1636
MfeI CAATTG 1 cut(s) 888
MhlI GDGCHC 3 cut(s) 460, 885, 1194
MlyI GAGTC 2 cut(s) 675, 1350
MmeI TCCRAC 1 cut(s) 1090
MseI TTAA 3 cut(s) 674, 1085, 1383
MslI CAYNNNNRTG 2 cut(s) 107, 538
MspA1I CMGCKG 1 cut(s) 1331
MspCI CTTAAG 1 cut(s) 673
MspI CCGG 1 cut(s) 357
MspR9I CCNGG 1 cut(s) 12
MunI CAATTG 1 cut(s) 888
MvaI CCWGG 1 cut(s) 12
MvnI CGCG 2 cut(s) 539, 1178
MwoI GCNNNNNNNGC 9 cut(s) 141, 144, 150, 184, 353, 455, 1025, 1151, 1427
NdeII GATC 1 cut(s) 1636
NheI GCTAGC 1 cut(s) 637
NlaIII CATG 6 cut(s) 106, 616, 717, 733, 1213, 1338
NlaIV GGNNCC 1 cut(s) 432
NmeAIII GCCGAG 1 cut(s) 701
NmuCI GTSAC 1 cut(s) 41
NspI RCATGY 2 cut(s) 717, 1338
PaeR7I CTCGAG 1 cut(s) 24
PagI TCATGA 1 cut(s) 1209
PceI AGGCCT 1 cut(s) 687
PciSI GCTCTTC 3 cut(s) 329, 1199, 1546
PfeI GAWTC 2 cut(s) 20, 55
PleI GAGTC 2 cut(s) 674, 1349
PpsI GAGTC 2 cut(s) 674, 1349
PsiI TTATAA 1 cut(s) 35
Psp124BI GAGCTC 1 cut(s) 460
Psp6I CCWGG 1 cut(s) 10
PspFI CCCAGC 1 cut(s) 1136
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 432
PspPI GGNCC 4 cut(s) 269, 430, 724, 1619
PstNI CAGNNNCTG 1 cut(s) 1355
PvuII CAGCTG 1 cut(s) 1331
RsaI GTAC 5 cut(s) 16, 101, 421, 1354, 1514
RsaNI GTAC 5 cut(s) 15, 100, 420, 1353, 1513
RseI CAYNNNNRTG 2 cut(s) 107, 538
SacI GAGCTC 1 cut(s) 460
SapI GCTCTTC 3 cut(s) 329, 1199, 1546
SaqAI TTAA 3 cut(s) 674, 1085, 1383
Sau3AI GATC 1 cut(s) 1636
Sau96I GGNCC 4 cut(s) 269, 430, 724, 1619
SchI GAGTC 2 cut(s) 675, 1350
ScrFI CCNGG 1 cut(s) 12
SduI GDGCHC 3 cut(s) 460, 885, 1194
SfaNI GCATC 1 cut(s) 405
SfcI CTRYAG 1 cut(s) 179
Sfr274I CTCGAG 1 cut(s) 24
SinI GGWCC 2 cut(s) 269, 430
SlaI CTCGAG 1 cut(s) 24
SmiMI CAYNNNNRTG 2 cut(s) 107, 538
SmlI CTYRAG 4 cut(s) 24, 642, 673, 681
SmoI CTYRAG 4 cut(s) 24, 642, 673, 681
SseBI AGGCCT 1 cut(s) 687
SsiI CCGC 5 cut(s) 136, 693, 1092, 1127, 1622
SspI AATATT 3 cut(s) 388, 550, 1591
SspMI CTAG 8 cut(s) 65, 150, 603, 638, 845, 1020, 1104, 1548
SstI GAGCTC 1 cut(s) 460
StuI AGGCCT 1 cut(s) 687
StyD4I CCNGG 1 cut(s) 10
StyI CCWWGG 2 cut(s) 872, 1119
TaaI ACNGT 3 cut(s) 249, 472, 918
TaiI ACGT 1 cut(s) 902
TaqI TCGA 1 cut(s) 25
TaqII GACCGA 1 cut(s) 1154
TatI WGTACW 3 cut(s) 99, 419, 1512
TauI GCSGC 2 cut(s) 138, 1094
TfiI GAWTC 2 cut(s) 20, 55
Tru1I TTAA 3 cut(s) 674, 1085, 1383
Tru9I TTAA 3 cut(s) 674, 1085, 1383
TscAI CASTG 2 cut(s) 957, 1524
TseFI GTSAC 1 cut(s) 41
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 7 cut(s) 105, 145, 990, 1198, 1266, 1383, 1623
TspGWI ACGGA 1 cut(s) 158
TspRI CASTG 2 cut(s) 957, 1524
Vha464I CTTAAG 1 cut(s) 673
VpaK11BI GGWCC 2 cut(s) 269, 430
XapI RAATTY 3 cut(s) 769, 817, 1260
XceI RCATGY 2 cut(s) 717, 1338
XcmI CCANNNNNNNNNTGG 1 cut(s) 564
XhoI CTCGAG 1 cut(s) 24
XspI CTAG 8 cut(s) 65, 150, 603, 638, 845, 1020, 1104, 1548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.