Rroxscaffold_6G00411950
NAC Family

NAC transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0015653
Physical Location & Seq
Forward (+)
34562185 .. 34563989
1805 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_6G00411950.1

Sequence Viewer

Length: 975 bp
ATGGCCGAGATGGAACAAACCATTGAGAATCACAACATTCAACTTCCTGCTGGGTTTCGATTTCACCCATCCGACGAAGAGCTTATCGTCCACTACTTGAAAAACAAAGTCACTTCATCTCCTCTACCGGCAACCATTATCACTGAATTGGACCTATACAAGTACAATCCATGGGAGCTACCACCAAAGGCCTTGTTCGGAGAAGAGGAGTGGTATTTCTTCACTCCAAGGGATCGGAAGTACCCGAATGGAACCAGGCCTAATAGGGCAGCTGGTTTGGGTTACTGGAAGGCTACAGGGACTGATAAGCATATTTTCAGTTCTTGTGGAACGAAAAGCATTGGGGTGAAGAAAGCACTTGTATTTTATACAGGGCATCCTCCAAAAGGTGTTAAGACTGAGTGGATCATGAACGAGTATAGATTGCTTGACACCACGATTTGGAGTACTACTTCAAAGCAAAAAGGGTCTATGAGGTTGGATGATTGGGTTCTATGCCGGGTTCGCCAAAAATGCAACAACAGCAGGAACATCTGGGAAGATCAAAACACTACTCCTAGTTATAACCTATCTGGCCACTTTAGACAAGGGGTGGATGAACAGGAAGCAAGCCCTAGCATCGAAATGGTCAGGAGTTATCTATACAAAGACTGTCCAATCCCTACTCCTGTTAACAAAGAGGCCGATTCGAATAAAATCAACAATGATGGGCAATTTTTAGTTTCCTCCCTCGACAGTTTGATCAACCCACTGAAGAGAAAGCCTGAAGGAAATGATCAACGTCGGTCTTCGGTTGCACCCAGCAAGAAGATATGTAACAGAGACGATCAAAAGGAGGAAATTAGTAATGGATCTATGATCAATCCTTGGGGAATAGATAACCAGTTTGGAGCTGACAGTTTCAATGCAGATCAATGGAGTTCCATGATCCAGTATCAAGAACTCAGTCAGTTAATTGGGTTTCCCTGCAACTGA

Protein Analysis

324

Amino Acids

37.13

Weight (kDa)

6.61

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 16 - 142 8.3e-48 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015653)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15670
malus_domestica MD04G1100400.v1.1
prunus_persica Prupe.6G238600_v2.0.a1
pyrus_communis pycom04g09540
rosa_chinensis RchiOBHm_Chr3g0469371
rosa_laevigata RLG00000024355
rosa_multiflora Rmu_co8391809.1_g000001 Rmu_sc0013046.1_g000008 Rmu_sc0013047.1_g000009
rosa_roxburghii Rroxscaffold_6G00411950
rosa_rugosa Rorug03G0101000
rosa_samantha Rh3AG150200 Rh3BG173900 Rh3CG164900 Rh3DG201600
rosa_wichuraiana Rw3G014160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 564
AccB7I CCANNNNNTGG 1 cut(s) 441
AclWI GGATC 4 cut(s) 240, 413, 859, 922
AcoI YGGCCR 2 cut(s) 3, 574
AcuI CTGAAG 2 cut(s) 773, 786
AfaI GTAC 3 cut(s) 164, 242, 448
AfiI CCNNNNNNNGG 2 cut(s) 386, 441
AgsI TTSAA 4 cut(s) 41, 100, 456, 904
AjnI CCWGG 1 cut(s) 254
AluBI AGCT 4 cut(s) 82, 178, 272, 893
AluI AGCT 4 cut(s) 82, 178, 272, 893
Alw26I GTCTC 1 cut(s) 816
AlwI GGATC 4 cut(s) 240, 413, 859, 922
AlwNI CAGNNNCTG 1 cut(s) 302
AoxI GGCC 5 cut(s) 3, 189, 257, 574, 681
ApeKI GCWGC 1 cut(s) 269
AspS9I GGNCC 1 cut(s) 151
AsuC2I CCSGG 1 cut(s) 500
AsuHPI GGTGA 2 cut(s) 56, 358
AsuII TTCGAA 1 cut(s) 689
AvaII GGWCC 1 cut(s) 151
BalI TGGCCA 1 cut(s) 576
BbsI GAAGAC 1 cut(s) 780
BbvI GCAGC 1 cut(s) 281
BccI CCATC 3 cut(s) 4, 76, 701
BciT130I CCWGG 1 cut(s) 256
BclI TGATCA 3 cut(s) 741, 775, 858
BcnI CCSGG 1 cut(s) 500
BcoDI GTCTC 1 cut(s) 816
BfaI CTAG 2 cut(s) 558, 615
BfmI CTRYAG 1 cut(s) 294
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
BmcAI AGTACT 1 cut(s) 448
Bme1390I CCNGG 2 cut(s) 256, 500
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 2 cut(s) 256, 500
BmsI GCATC 2 cut(s) 385, 627
BpiI GAAGAC 1 cut(s) 780
Bpu14I TTCGAA 1 cut(s) 689
BpuMI CCSGG 1 cut(s) 500
BsaJI CCNNGG 3 cut(s) 170, 227, 866
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bsc4I CCNNNNNNNGG 2 cut(s) 386, 441
Bse118I RCCGGY 1 cut(s) 127
Bse1I ACTGG 3 cut(s) 290, 883, 931
BseBI CCWGG 1 cut(s) 256
BseDI CCNNGG 3 cut(s) 170, 227, 866
BseGI GGATG 4 cut(s) 68, 376, 487, 601
BseLI CCNNNNNNNGG 2 cut(s) 386, 441
BseMII CTCAG 2 cut(s) 390, 958
BseNI ACTGG 3 cut(s) 290, 883, 931
BseRI GAGGAG 2 cut(s) 111, 221
BseXI GCAGC 1 cut(s) 281
BseYI CCCAGC 2 cut(s) 50, 800
BshFI GGCC 5 cut(s) 5, 191, 259, 576, 683
BsiSI CCGG 2 cut(s) 128, 499
BslFI GGGAC 1 cut(s) 313
BslI CCNNNNNNNGG 2 cut(s) 386, 441
BsmAI GTCTC 1 cut(s) 816
BsmBI CGTCTC 1 cut(s) 816
BsmFI GGGAC 1 cut(s) 313
BsnI GGCC 5 cut(s) 5, 191, 259, 576, 683
Bsp119I TTCGAA 1 cut(s) 689
Bsp19I CCATGG 1 cut(s) 170
BspANI GGCC 5 cut(s) 5, 191, 259, 576, 683
BspCNI CTCAG 2 cut(s) 391, 957
BspHI TCATGA 1 cut(s) 408
BspLI GGNNCC 1 cut(s) 253
BspPI GGATC 4 cut(s) 240, 413, 859, 922
BspQI GCTCTTC 1 cut(s) 72
BspT104I TTCGAA 1 cut(s) 689
BsrFI RCCGGY 1 cut(s) 127
BsrI ACTGG 3 cut(s) 290, 883, 931
BssAI RCCGGY 1 cut(s) 127
BssECI CCNNGG 3 cut(s) 170, 227, 866
BssT1I CCWWGG 3 cut(s) 170, 227, 866
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 3 cut(s) 653, 737, 899
Bst6I CTCTTC 3 cut(s) 72, 198, 749
BstBI TTCGAA 1 cut(s) 689
BstC8I GCNNGC 1 cut(s) 610
BstDEI CTNAG 2 cut(s) 399, 944
BstDSI CCRYGG 1 cut(s) 170
BstENI CCTNNNNNAGG 1 cut(s) 384
BstF5I GGATG 4 cut(s) 68, 376, 487, 601
BstMAI GTCTC 1 cut(s) 816
BstMWI GCNNNNNNNGC 3 cut(s) 504, 513, 522
BstNI CCWGG 1 cut(s) 256
BstSCI CCNGG 2 cut(s) 254, 498
BstSFI CTRYAG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 281
BstV2I GAAGAC 1 cut(s) 780
BstX2I RGATCY 1 cut(s) 851
BstYI RGATCY 1 cut(s) 851
BsuRI GGCC 5 cut(s) 5, 191, 259, 576, 683
BtgI CCRYGG 1 cut(s) 170
BtsCI GGATG 4 cut(s) 68, 376, 487, 601
BtsIMutI CAGTG 2 cut(s) 141, 749
Cac8I GCNNGC 1 cut(s) 610
CaiI CAGNNNCTG 1 cut(s) 302
CciI TCATGA 1 cut(s) 408
Cfr10I RCCGGY 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 151
Csp6I GTAC 3 cut(s) 163, 241, 447
CviAII CATG 3 cut(s) 171, 409, 925
CviQI GTAC 3 cut(s) 163, 241, 447
DdeI CTNAG 2 cut(s) 399, 944
EaeI YGGCCR 2 cut(s) 3, 574
Eam1104I CTCTTC 3 cut(s) 72, 198, 749
EarI CTCTTC 3 cut(s) 72, 198, 749
Eco130I CCWWGG 3 cut(s) 170, 227, 866
Eco147I AGGCCT 2 cut(s) 191, 259
Eco47I GGWCC 1 cut(s) 151
Eco57I CTGAAG 2 cut(s) 773, 786
EcoNI CCTNNNNNAGG 1 cut(s) 384
EcoRII CCWGG 1 cut(s) 254
EcoT14I CCWWGG 3 cut(s) 170, 227, 866
ErhI CCWWGG 3 cut(s) 170, 227, 866
Esp3I CGTCTC 1 cut(s) 816
FaeI CATG 3 cut(s) 174, 412, 928
FaqI GGGAC 1 cut(s) 313
FatI CATG 3 cut(s) 170, 408, 924
FbaI TGATCA 3 cut(s) 741, 775, 858
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 4 cut(s) 55, 363, 494, 608
Fsp4HI GCNGC 1 cut(s) 270
FspBI CTAG 2 cut(s) 558, 615
GluI GCNGC 1 cut(s) 270
GsaI CCCAGC 2 cut(s) 54, 804
HaeIII GGCC 5 cut(s) 5, 191, 259, 576, 683
HapII CCGG 2 cut(s) 128, 499
Hin1II CATG 3 cut(s) 174, 412, 928
HincII GTYRAC 1 cut(s) 673
HindII GTYRAC 1 cut(s) 673
HinfI GANTC 2 cut(s) 28, 686
HpaI GTTAAC 1 cut(s) 673
HpaII CCGG 2 cut(s) 128, 499
HphI GGTGA 2 cut(s) 56, 358
Hpy166II GTNNAC 2 cut(s) 91, 673
Hpy188I TCNGA 3 cut(s) 73, 200, 237
Hpy188III TCNNGA 3 cut(s) 409, 631, 938
Hpy8I GTNNAC 2 cut(s) 91, 673
Hpy99I CGWCG 2 cut(s) 77, 786
HpyAV CCTTC 2 cut(s) 283, 761
HpyCH4III ACNGT 3 cut(s) 653, 737, 899
HpyCH4IV ACGT 1 cut(s) 781
HpyCH4V TGCA 4 cut(s) 516, 797, 908, 969
HpyF10VI GCNNNNNNNGC 3 cut(s) 504, 513, 522
HpyF3I CTNAG 2 cut(s) 399, 944
HpySE526I ACGT 1 cut(s) 781
Hsp92II CATG 3 cut(s) 174, 412, 928
Ksp22I TGATCA 3 cut(s) 741, 775, 858
KspAI GTTAAC 1 cut(s) 673
LguI GCTCTTC 1 cut(s) 72
LmnI GCTCC 2 cut(s) 175, 890
Lsp1109I GCAGC 1 cut(s) 281
LweI GCATC 2 cut(s) 385, 627
MaeI CTAG 2 cut(s) 558, 615
MaeII ACGT 1 cut(s) 781
MaeIII GTNAC 3 cut(s) 109, 281, 815
MboII GAAGA 8 cut(s) 89, 211, 215, 361, 551, 766, 780, 820
MflI RGATCY 1 cut(s) 851
MlsI TGGCCA 1 cut(s) 576
MluCI AATT 4 cut(s) 146, 713, 840, 954
MluNI TGGCCA 1 cut(s) 576
MmeI TCCRAC 2 cut(s) 96, 459
MnlI CCTC 8 cut(s) 132, 199, 390, 468, 673, 736, 740, 829
Mox20I TGGCCA 1 cut(s) 576
MscI TGGCCA 1 cut(s) 576
MseI TTAA 3 cut(s) 393, 672, 953
MslI CAYNNNNRTG 2 cut(s) 344, 623
Msp20I TGGCCA 1 cut(s) 576
MspA1I CMGCKG 1 cut(s) 272
MspI CCGG 2 cut(s) 128, 499
MspR9I CCNGG 2 cut(s) 256, 500
MvaI CCWGG 1 cut(s) 256
MwoI GCNNNNNNNGC 3 cut(s) 504, 513, 522
NciI CCSGG 1 cut(s) 500
NcoI CCATGG 1 cut(s) 170
NlaIII CATG 3 cut(s) 174, 412, 928
NlaIV GGNNCC 1 cut(s) 253
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 109
NspV TTCGAA 1 cut(s) 689
PagI TCATGA 1 cut(s) 408
PceI AGGCCT 2 cut(s) 191, 259
PciSI GCTCTTC 1 cut(s) 72
PfeI GAWTC 2 cut(s) 28, 686
PflMI CCANNNNNTGG 1 cut(s) 441
PkrI GCNGC 1 cut(s) 271
PsiI TTATAA 1 cut(s) 564
Psp6I CCWGG 1 cut(s) 254
PspFI CCCAGC 2 cut(s) 50, 800
PspGI CCWGG 1 cut(s) 254
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 1 cut(s) 151
PstNI CAGNNNCTG 1 cut(s) 302
PsuI RGATCY 1 cut(s) 851
PvuII CAGCTG 1 cut(s) 272
RsaI GTAC 3 cut(s) 164, 242, 448
RsaNI GTAC 3 cut(s) 163, 241, 447
RseI CAYNNNNRTG 2 cut(s) 344, 623
SapI GCTCTTC 1 cut(s) 72
SaqAI TTAA 3 cut(s) 393, 672, 953
SatI GCNGC 1 cut(s) 270
Sau96I GGNCC 1 cut(s) 151
ScaI AGTACT 1 cut(s) 448
ScrFI CCNGG 2 cut(s) 256, 500
SetI ASST 9 cut(s) 84, 156, 180, 274, 391, 479, 570, 784, 895
SfaNI GCATC 2 cut(s) 385, 627
SfcI CTRYAG 1 cut(s) 294
SfuI TTCGAA 1 cut(s) 689
SinI GGWCC 1 cut(s) 151
SmiMI CAYNNNNRTG 2 cut(s) 344, 623
Sse9I AATT 4 cut(s) 146, 713, 840, 954
SseBI AGGCCT 2 cut(s) 191, 259
SspMI CTAG 2 cut(s) 558, 615
StuI AGGCCT 2 cut(s) 191, 259
StyD4I CCNGG 2 cut(s) 254, 498
StyI CCWWGG 3 cut(s) 170, 227, 866
TaaI ACNGT 3 cut(s) 653, 737, 899
TaiI ACGT 1 cut(s) 784
TaqI TCGA 4 cut(s) 58, 621, 689, 732
TaqII GACCGA 1 cut(s) 774
TasI AATT 4 cut(s) 146, 713, 840, 954
TatI WGTACW 2 cut(s) 162, 446
TfiI GAWTC 2 cut(s) 28, 686
Tru1I TTAA 3 cut(s) 393, 672, 953
Tru9I TTAA 3 cut(s) 393, 672, 953
TscAI CASTG 2 cut(s) 148, 756
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 1 cut(s) 269
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 3 cut(s) 105, 425, 612
TspRI CASTG 2 cut(s) 148, 756
Van91I CCANNNNNTGG 1 cut(s) 441
VpaK11BI GGWCC 1 cut(s) 151
XagI CCTNNNNNAGG 1 cut(s) 384
XspI CTAG 2 cut(s) 558, 615
ZrmI AGTACT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.