Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8391809.1

Orthogroup ID

OG0015653

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 966

Gene Structure 966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8391809.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ttggatgattgggtactatgccgggttcgccaaaaatgcaacaacagcaggaacatctgggaagatcaaaacactactcctagttataaactatctggccactttagacaaggggtggatgaacaggaagcaagccctagcatcgaaatggccaggagttatctatacaaagactgtccaatgttaccctacatttttgcctctcagaaagtgcttcctaccatcaaaaccacttcaagtataagctttcaggacactactgaaaatagaaaatcttgcagccctactcctgtttaccaagaggccgattcgaataaaatcaacaatgatggggaatttttagtttcttccctcgacagtttgatcaacccactgaagagaaagcctgaaggaaatgatcaacgtcggtcttcggttgcacccagcaagaagatatgtaatagagacgatcaaaaggaggaaattagtaatggatctatgatcaatccttggggaatagataaccagtttggagctgacagtttcaatgcagatcaatggagttccatgatccagtatccagaactcagtcagttaattgggtttccctgcaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

198

Amino Acids

22.52

Weight (kDa)

5.12

Isoelectric Point (pI)

50.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015653)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15670
malus_domestica	MD04G1100400.v1.1
prunus_persica	Prupe.6G238600_v2.0.a1
pyrus_communis	pycom04g09540
rosa_chinensis	RchiOBHm_Chr3g0469371
rosa_laevigata	RLG00000024355
rosa_multiflora	Rmu_co8391809.1_g000001 Rmu_sc0013046.1_g000008 Rmu_sc0013047.1_g000009
rosa_roxburghii	Rroxscaffold_6G00411950
rosa_rugosa	Rorug03G0101000
rosa_samantha	Rh3AG150200 Rh3BG173900 Rh3CG164900 Rh3DG201600
rosa_wichuraiana	Rw3G014160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	87
AclWI	GGATC	2 cut(s)	481, 544
AcoI	YGGCCR	2 cut(s)	97, 150
AcsI	RAATTY	1 cut(s)	335
AcuI	CTGAAG	2 cut(s)	395, 408
AfaI	GTAC	1 cut(s)	15
AgsI	TTSAA	2 cut(s)	237, 526
AjnI	CCWGG	1 cut(s)	152
AluBI	AGCT	2 cut(s)	246, 515
AluI	AGCT	2 cut(s)	246, 515
Alw26I	GTCTC	1 cut(s)	438
AlwI	GGATC	2 cut(s)	481, 544
AoxI	GGCC	3 cut(s)	97, 150, 303
ApeKI	GCWGC	1 cut(s)	279
ApoI	RAATTY	1 cut(s)	335
AsuC2I	CCSGG	1 cut(s)	23
AsuII	TTCGAA	1 cut(s)	311
BalI	TGGCCA	2 cut(s)	99, 152
BbsI	GAAGAC	1 cut(s)	402
BbvI	GCAGC	1 cut(s)	291
BccI	CCATC	2 cut(s)	230, 323
BciT130I	CCWGG	1 cut(s)	154
BciVI	GTATCC	1 cut(s)	567
BclI	TGATCA	3 cut(s)	363, 397, 480
BcnI	CCSGG	1 cut(s)	23
BcoDI	GTCTC	1 cut(s)	438
BfaI	CTAG	2 cut(s)	81, 138
BfuI	GTATCC	1 cut(s)	567
BisI	GCNGC	1 cut(s)	280
BlsI	GCNGC	1 cut(s)	281
Bme1390I	CCNGG	2 cut(s)	23, 154
BmrFI	CCNGG	2 cut(s)	23, 154
BmsI	GCATC	1 cut(s)	150
BpiI	GAAGAC	1 cut(s)	402
Bpu14I	TTCGAA	1 cut(s)	311
BpuMI	CCSGG	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	488
Bse1I	ACTGG	2 cut(s)	505, 553
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	1 cut(s)	488
BseGI	GGATG	2 cut(s)	10, 124
BseMII	CTCAG	2 cut(s)	218, 580
BseNI	ACTGG	2 cut(s)	505, 553
BseXI	GCAGC	1 cut(s)	291
BseYI	CCCAGC	1 cut(s)	422
BshFI	GGCC	3 cut(s)	99, 152, 305
BsiSI	CCGG	1 cut(s)	22
BsmAI	GTCTC	1 cut(s)	438
BsmBI	CGTCTC	1 cut(s)	438
BsnI	GGCC	3 cut(s)	99, 152, 305
Bsp119I	TTCGAA	1 cut(s)	311
Bsp143I	GATC	8 cut(s)	64, 363, 397, 448, 473, 480, 532, 549
BspANI	GGCC	3 cut(s)	99, 152, 305
BspCNI	CTCAG	2 cut(s)	217, 579
BspPI	GGATC	2 cut(s)	481, 544
BspT104I	TTCGAA	1 cut(s)	311
BsrI	ACTGG	2 cut(s)	505, 553
BssECI	CCNNGG	1 cut(s)	488
BssMI	GATC	8 cut(s)	64, 363, 397, 448, 473, 480, 532, 549
BssT1I	CCWWGG	1 cut(s)	488
Bst2UI	CCWGG	1 cut(s)	154
Bst4CI	ACNGT	3 cut(s)	176, 359, 521
Bst6I	CTCTTC	1 cut(s)	371
BstBI	TTCGAA	1 cut(s)	311
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	2 cut(s)	204, 566
BstF5I	GGATG	2 cut(s)	10, 124
BstKTI	GATC	8 cut(s)	67, 366, 400, 451, 476, 483, 535, 552
BstMAI	GTCTC	1 cut(s)	438
BstMBI	GATC	8 cut(s)	64, 363, 397, 448, 473, 480, 532, 549
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 36, 45
BstNI	CCWGG	1 cut(s)	154
BstSCI	CCNGG	2 cut(s)	21, 152
BstV1I	GCAGC	1 cut(s)	291
BstV2I	GAAGAC	1 cut(s)	402
BstX2I	RGATCY	1 cut(s)	473
BstYI	RGATCY	1 cut(s)	473
BsuI	GTATCC	1 cut(s)	567
BsuRI	GGCC	3 cut(s)	99, 152, 305
BtsCI	GGATG	2 cut(s)	10, 124
BtsIMutI	CAGTG	1 cut(s)	371
Cac8I	GCNNGC	1 cut(s)	133
Csp6I	GTAC	1 cut(s)	14
CviAII	CATG	1 cut(s)	547
CviJI	RGCY	8 cut(s)	99, 135, 152, 246, 282, 305, 385, 515
CviKI_1	RGCY	8 cut(s)	99, 135, 152, 246, 282, 305, 385, 515
CviQI	GTAC	1 cut(s)	14
DdeI	CTNAG	2 cut(s)	204, 566
DpnI	GATC	8 cut(s)	66, 365, 399, 450, 475, 482, 534, 551
DpnII	GATC	8 cut(s)	64, 363, 397, 448, 473, 480, 532, 549
EaeI	YGGCCR	2 cut(s)	97, 150
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
Eco130I	CCWWGG	1 cut(s)	488
Eco57I	CTGAAG	2 cut(s)	395, 408
EcoRII	CCWGG	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	488
ErhI	CCWWGG	1 cut(s)	488
Esp3I	CGTCTC	1 cut(s)	438
FaeI	CATG	1 cut(s)	550
FaiI	YATR	7 cut(s)	19, 87, 166, 242, 436, 479, 548
FatI	CATG	1 cut(s)	546
FbaI	TGATCA	3 cut(s)	363, 397, 480
Fnu4HI	GCNGC	1 cut(s)	280
FokI	GGATG	2 cut(s)	17, 131
Fsp4HI	GCNGC	1 cut(s)	280
FspBI	CTAG	2 cut(s)	81, 138
GluI	GCNGC	1 cut(s)	280
GsaI	CCCAGC	1 cut(s)	426
HaeIII	GGCC	3 cut(s)	99, 152, 305
HapII	CCGG	1 cut(s)	22
Hin1II	CATG	1 cut(s)	550
HindIII	AAGCTT	1 cut(s)	244
HinfI	GANTC	1 cut(s)	308
HpaII	CCGG	1 cut(s)	22
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	2 cut(s)	251, 560
Hpy8I	GTNNAC	1 cut(s)	295
Hpy99I	CGWCG	1 cut(s)	408
HpyAV	CCTTC	1 cut(s)	383
HpyCH4III	ACNGT	3 cut(s)	176, 359, 521
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	5 cut(s)	39, 279, 419, 530, 591
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 36, 45
HpyF3I	CTNAG	2 cut(s)	204, 566
HpySE526I	ACGT	1 cut(s)	403
Hsp92II	CATG	1 cut(s)	550
Ksp22I	TGATCA	3 cut(s)	363, 397, 480
Kzo9I	GATC	8 cut(s)	64, 363, 397, 448, 473, 480, 532, 549
LmnI	GCTCC	1 cut(s)	512
Lsp1109I	GCAGC	1 cut(s)	291
LweI	GCATC	1 cut(s)	150
MaeI	CTAG	2 cut(s)	81, 138
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	1 cut(s)	183
MalI	GATC	8 cut(s)	66, 365, 399, 450, 475, 482, 534, 551
MboI	GATC	8 cut(s)	64, 363, 397, 448, 473, 480, 532, 549
MboII	GAAGA	5 cut(s)	74, 339, 388, 402, 442
MflI	RGATCY	1 cut(s)	473
MlsI	TGGCCA	2 cut(s)	99, 152
MluCI	AATT	3 cut(s)	335, 462, 576
MluNI	TGGCCA	2 cut(s)	99, 152
MnlI	CCTC	4 cut(s)	211, 295, 362, 451
Mox20I	TGGCCA	2 cut(s)	99, 152
MscI	TGGCCA	2 cut(s)	99, 152
MseI	TTAA	1 cut(s)	575
MslI	CAYNNNNRTG	1 cut(s)	146
Msp20I	TGGCCA	2 cut(s)	99, 152
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	2 cut(s)	23, 154
MvaI	CCWGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	3 cut(s)	27, 36, 45
NciI	CCSGG	1 cut(s)	23
NdeII	GATC	8 cut(s)	64, 363, 397, 448, 473, 480, 532, 549
NlaIII	CATG	1 cut(s)	550
NspV	TTCGAA	1 cut(s)	311
PfeI	GAWTC	1 cut(s)	308
PkrI	GCNGC	1 cut(s)	281
PsiI	TTATAA	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	152
PspFI	CCCAGC	1 cut(s)	422
PspGI	CCWGG	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	473
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
RseI	CAYNNNNRTG	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	575
SatI	GCNGC	1 cut(s)	280
Sau3AI	GATC	8 cut(s)	64, 363, 397, 448, 473, 480, 532, 549
ScrFI	CCNGG	2 cut(s)	23, 154
SetI	ASST	3 cut(s)	248, 406, 517
SfaNI	GCATC	1 cut(s)	150
SfuI	TTCGAA	1 cut(s)	311
SmiMI	CAYNNNNRTG	1 cut(s)	146
Sse9I	AATT	3 cut(s)	335, 462, 576
SspMI	CTAG	2 cut(s)	81, 138
StyD4I	CCNGG	2 cut(s)	21, 152
StyI	CCWWGG	1 cut(s)	488
TaaI	ACNGT	3 cut(s)	176, 359, 521
TaiI	ACGT	1 cut(s)	406
TaqI	TCGA	3 cut(s)	144, 311, 354
TaqII	GACCGA	1 cut(s)	396
TasI	AATT	3 cut(s)	335, 462, 576
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	1 cut(s)	575
Tru9I	TTAA	1 cut(s)	575
TscAI	CASTG	1 cut(s)	378
TseI	GCWGC	1 cut(s)	279
TspDTI	ATGAA	1 cut(s)	135
TspRI	CASTG	1 cut(s)	378
XapI	RAATTY	1 cut(s)	335
XspI	CTAG	2 cut(s)	81, 138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.