RchiOBHm_Chr3g0469371
NAC Family

NAC transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0015653
Physical Location & Seq
Reverse (-)
15116309 .. 15116797
489 bp
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UTR
Exon/CDS
Intron
PRQ43521

Sequence Viewer

Length: 489 bp
ATGGCCGAGATGGAACAAACCATTGAGAATCACAACATTCAACTTCCTGCTGGGTTTCGATTTCACCCATCCGACGAAGAGCTTATCGTCCACTACTTGAAAAACAAAGTCACTTCATCTCCCCTACCGGCAACCATCATCACTGAATTGGACCTATACAAGTACAATCCATGGGAGCTACCACCAAAGGCCTTGTTCGGAGAAGAGGAGTGGTATTTCTTCACTCCAAGGGATCGGAAGTACCCGAATGGAACCAGGCCTAATAGGGCAGCTGGTTTGGGTTACTGGAAGGCTACAGGGACTGATAAGCATATTTTCAGTTCTTGTGGAACGAAAAGCATTGGGGTGAAGAAAGCACTTGTATTTTATACAGGGCATCCTCCAAAAGGTGTTAAGACTGAGTGGATCATGAACGAGTATAGATTGCTTGACACCACGATTTGGAGTACTACTTCAAAGCAAAAAGGGTCTATGAGGGTAAGTATATAA

Protein Analysis

162

Amino Acids

18.63

Weight (kDa)

9.1

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 16 - 142 1.2e-48 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015653)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15670
malus_domestica MD04G1100400.v1.1
prunus_persica Prupe.6G238600_v2.0.a1
pyrus_communis pycom04g09540
rosa_chinensis RchiOBHm_Chr3g0469371
rosa_laevigata RLG00000024355
rosa_multiflora Rmu_co8391809.1_g000001 Rmu_sc0013046.1_g000008 Rmu_sc0013047.1_g000009
rosa_roxburghii Rroxscaffold_6G00411950
rosa_rugosa Rorug03G0101000
rosa_samantha Rh3AG150200 Rh3BG173900 Rh3CG164900 Rh3DG201600
rosa_wichuraiana Rw3G014160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 441
AclWI GGATC 2 cut(s) 240, 413
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 3 cut(s) 164, 242, 448
AfiI CCNNNNNNNGG 2 cut(s) 386, 441
AgsI TTSAA 3 cut(s) 41, 100, 456
AjnI CCWGG 1 cut(s) 254
AluBI AGCT 3 cut(s) 82, 178, 272
AluI AGCT 3 cut(s) 82, 178, 272
AlwI GGATC 2 cut(s) 240, 413
AlwNI CAGNNNCTG 1 cut(s) 302
AoxI GGCC 3 cut(s) 3, 189, 257
ApeKI GCWGC 1 cut(s) 269
AspS9I GGNCC 1 cut(s) 151
AsuHPI GGTGA 2 cut(s) 56, 358
AvaII GGWCC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 281
BccI CCATC 3 cut(s) 4, 76, 143
BciT130I CCWGG 1 cut(s) 256
BfmI CTRYAG 1 cut(s) 294
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
BmcAI AGTACT 1 cut(s) 448
Bme1390I CCNGG 1 cut(s) 256
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 256
BmsI GCATC 1 cut(s) 385
BsaJI CCNNGG 2 cut(s) 170, 227
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bsc4I CCNNNNNNNGG 2 cut(s) 386, 441
Bse118I RCCGGY 1 cut(s) 127
Bse1I ACTGG 1 cut(s) 290
BseBI CCWGG 1 cut(s) 256
BseDI CCNNGG 2 cut(s) 170, 227
BseGI GGATG 2 cut(s) 68, 376
BseLI CCNNNNNNNGG 2 cut(s) 386, 441
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 1 cut(s) 290
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 281
BseYI CCCAGC 1 cut(s) 50
BshFI GGCC 3 cut(s) 5, 191, 259
BsiSI CCGG 1 cut(s) 128
BslFI GGGAC 1 cut(s) 313
BslI CCNNNNNNNGG 2 cut(s) 386, 441
BsmFI GGGAC 1 cut(s) 313
BsnI GGCC 3 cut(s) 5, 191, 259
Bsp143I GATC 2 cut(s) 232, 405
Bsp19I CCATGG 1 cut(s) 170
BspANI GGCC 3 cut(s) 5, 191, 259
BspCNI CTCAG 1 cut(s) 391
BspHI TCATGA 1 cut(s) 408
BspLI GGNNCC 1 cut(s) 253
BspPI GGATC 2 cut(s) 240, 413
BspQI GCTCTTC 1 cut(s) 72
BsrFI RCCGGY 1 cut(s) 127
BsrI ACTGG 1 cut(s) 290
BssAI RCCGGY 1 cut(s) 127
BssECI CCNNGG 2 cut(s) 170, 227
BssMI GATC 2 cut(s) 232, 405
BssT1I CCWWGG 2 cut(s) 170, 227
Bst2UI CCWGG 1 cut(s) 256
Bst6I CTCTTC 2 cut(s) 72, 198
BstDEI CTNAG 1 cut(s) 399
BstDSI CCRYGG 1 cut(s) 170
BstENI CCTNNNNNAGG 1 cut(s) 384
BstF5I GGATG 2 cut(s) 68, 376
BstKTI GATC 2 cut(s) 235, 408
BstMBI GATC 2 cut(s) 232, 405
BstNI CCWGG 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 254
BstSFI CTRYAG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 281
BsuRI GGCC 3 cut(s) 5, 191, 259
BtgI CCRYGG 1 cut(s) 170
BtsCI GGATG 2 cut(s) 68, 376
BtsIMutI CAGTG 1 cut(s) 141
CaiI CAGNNNCTG 1 cut(s) 302
CciI TCATGA 1 cut(s) 408
Cfr10I RCCGGY 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 151
Csp6I GTAC 3 cut(s) 163, 241, 447
CviAII CATG 2 cut(s) 171, 409
CviJI RGCY 7 cut(s) 5, 82, 178, 191, 259, 272, 293
CviKI_1 RGCY 7 cut(s) 5, 82, 178, 191, 259, 272, 293
CviQI GTAC 3 cut(s) 163, 241, 447
DdeI CTNAG 1 cut(s) 399
DpnI GATC 2 cut(s) 234, 407
DpnII GATC 2 cut(s) 232, 405
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 72, 198
EarI CTCTTC 2 cut(s) 72, 198
Eco130I CCWWGG 2 cut(s) 170, 227
Eco147I AGGCCT 2 cut(s) 191, 259
Eco47I GGWCC 1 cut(s) 151
EcoNI CCTNNNNNAGG 1 cut(s) 384
EcoRII CCWGG 1 cut(s) 254
EcoT14I CCWWGG 2 cut(s) 170, 227
ErhI CCWWGG 2 cut(s) 170, 227
FaeI CATG 2 cut(s) 174, 412
FaiI YATR 9 cut(s) 157, 172, 312, 369, 410, 420, 473, 485, 487
FaqI GGGAC 1 cut(s) 313
FatI CATG 2 cut(s) 170, 408
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 2 cut(s) 55, 363
Fsp4HI GCNGC 1 cut(s) 270
GluI GCNGC 1 cut(s) 270
GsaI CCCAGC 1 cut(s) 54
HaeIII GGCC 3 cut(s) 5, 191, 259
HapII CCGG 1 cut(s) 128
Hin1II CATG 2 cut(s) 174, 412
HinfI GANTC 1 cut(s) 28
HpaII CCGG 1 cut(s) 128
HphI GGTGA 2 cut(s) 56, 358
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 3 cut(s) 73, 200, 237
Hpy188III TCNNGA 1 cut(s) 409
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 1 cut(s) 283
HpyF3I CTNAG 1 cut(s) 399
Hsp92II CATG 2 cut(s) 174, 412
Kzo9I GATC 2 cut(s) 232, 405
LguI GCTCTTC 1 cut(s) 72
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 9 cut(s) 36, 60, 141, 241, 258, 268, 271, 282, 357
Lsp1109I GCAGC 1 cut(s) 281
LweI GCATC 1 cut(s) 385
MaeIII GTNAC 2 cut(s) 109, 281
MalI GATC 2 cut(s) 234, 407
MboI GATC 2 cut(s) 232, 405
MboII GAAGA 4 cut(s) 89, 211, 215, 361
MluCI AATT 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 3 cut(s) 199, 390, 468
MseI TTAA 1 cut(s) 393
MslI CAYNNNNRTG 1 cut(s) 344
MspA1I CMGCKG 1 cut(s) 272
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 256
MvaI CCWGG 1 cut(s) 256
NcoI CCATGG 1 cut(s) 170
NdeII GATC 2 cut(s) 232, 405
NlaIII CATG 2 cut(s) 174, 412
NlaIV GGNNCC 1 cut(s) 253
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 109
PagI TCATGA 1 cut(s) 408
PceI AGGCCT 2 cut(s) 191, 259
PciSI GCTCTTC 1 cut(s) 72
PfeI GAWTC 1 cut(s) 28
PflMI CCANNNNNTGG 1 cut(s) 441
PkrI GCNGC 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 254
PspFI CCCAGC 1 cut(s) 50
PspGI CCWGG 1 cut(s) 254
PspN4I GGNNCC 1 cut(s) 253
PspPI GGNCC 1 cut(s) 151
PstNI CAGNNNCTG 1 cut(s) 302
PvuII CAGCTG 1 cut(s) 272
RsaI GTAC 3 cut(s) 164, 242, 448
RsaNI GTAC 3 cut(s) 163, 241, 447
RseI CAYNNNNRTG 1 cut(s) 344
SapI GCTCTTC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 2 cut(s) 232, 405
Sau96I GGNCC 1 cut(s) 151
ScaI AGTACT 1 cut(s) 448
ScrFI CCNGG 1 cut(s) 256
SetI ASST 5 cut(s) 84, 156, 180, 274, 391
SfaNI GCATC 1 cut(s) 385
SfcI CTRYAG 1 cut(s) 294
SinI GGWCC 1 cut(s) 151
SmiMI CAYNNNNRTG 1 cut(s) 344
Sse9I AATT 1 cut(s) 146
SseBI AGGCCT 2 cut(s) 191, 259
StuI AGGCCT 2 cut(s) 191, 259
StyD4I CCNGG 1 cut(s) 254
StyI CCWWGG 2 cut(s) 170, 227
TaqI TCGA 1 cut(s) 58
TasI AATT 1 cut(s) 146
TatI WGTACW 2 cut(s) 162, 446
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 1 cut(s) 269
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 2 cut(s) 105, 425
TspRI CASTG 1 cut(s) 148
Van91I CCANNNNNTGG 1 cut(s) 441
VpaK11BI GGWCC 1 cut(s) 151
XagI CCTNNNNNAGG 1 cut(s) 384
ZrmI AGTACT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.