Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0015653

Physical Location & Seq

Genomic Coordinates Forward (+)

18583832 .. 18585692

Gene Structure 1861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1100400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGAGAGGGAAAACCAAGCCACCGAAAACATCCAGCTTCCTGCTGGATTCCGTTTTCACCCATCCGACGAAGAACTCATCGTTCATTATCTGAAAAACAAAGTCACTTCAAGTCCTCTACCGGCAACCATCATCACTGAACTGGATCTGTATAAGTACAACCCGTGGGAGCTACCACCAAAAGCCTCCTTCGGGGAAGAAGAGTGGTATTTTTTCACCCCAAGGGATCGGAAGTACCCGAATGGAAGCAGGCCTAATAGAGCAGCTGGTTTGGGTTACTGGAAGGCCACGGGAACTGATAAGCATATTTTTAGTTCTTGTGGAACAAAAAGCATTGGGGTTAAAAAAGCACTTGTGTTCTACACAGGACACCCTCCGAAAGGTGTTAAGACGGAGTGGATCATGAACGAGTACAGATTGCTTGACACAACCATGTGGACTTCAAAGCAAAAAGGGTCGATGAGGTTGGATGATTGGGTGTTATGTCGGGTTCGACAAAAGTGCAACAACACCAGGAGCATTTGGGAAGATCAAAACAGCCCTCCTAGCTATAAACTAGGTGCCTACACTAAGCAAGTGGATGGGCCCTGCTCGAATGATACAAACCCTAGCATCGAAATGGTCCGGAACTATCTGTACAAAGATTGTCCAATGCTACCCTACATTTTTGCCTCTCCCGAACTTCCTTACGCTAAAACCGCTTCAAGCATAAGCTTTCAGGGAACTGGAAACACGAAATCTTGCAGTACTTCCCTTCACGAGAACAATTCAAACGAAACCAATGAGCTGCTTTTAGTTTATTCCATTGATGATTTGATTAACCCTTTGAAGAGAAAACCTACAGAAGGAAATGGGTACAAGAGTTTTGTCACACCAAGCAAGAGGATATGTAGCAGAGATTACAAGGAGGAGGAAGTTAATTCCTCGACCAGCCGGGACTGTCGAGCGATGAACTTGTGGGGTGTAGACCAGTCTGGCTCAGCTGATAATAATTTGAATGCAGATCAAGGGAGTTCCATGATCGAGTATCAAGAACTTAGCCAATTAATTGGCTTTCAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

355

Amino Acids

40.27

Weight (kDa)

6.95

Isoelectric Point (pI)

38.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	14 - 140	4.7e-48	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015653)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15670
malus_domestica	MD04G1100400.v1.1
prunus_persica	Prupe.6G238600_v2.0.a1
pyrus_communis	pycom04g09540
rosa_chinensis	RchiOBHm_Chr3g0469371
rosa_laevigata	RLG00000024355
rosa_multiflora	Rmu_co8391809.1_g000001 Rmu_sc0013046.1_g000008 Rmu_sc0013047.1_g000009
rosa_roxburghii	Rroxscaffold_6G00411950
rosa_rugosa	Rorug03G0101000
rosa_samantha	Rh3AG150200 Rh3BG173900 Rh3CG164900 Rh3DG201600
rosa_wichuraiana	Rw3G014160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	560
AccI	GTMKAC	1 cut(s)	966
AccIII	TCCGGA	1 cut(s)	624
AciI	CCGC	1 cut(s)	699
AclWI	GGATC	3 cut(s)	153, 234, 407
AfaI	GTAC	6 cut(s)	158, 236, 413, 638, 748, 857
AfiI	CCNNNNNNNGG	3 cut(s)	192, 380, 845
AgsI	TTSAA	6 cut(s)	111, 444, 705, 771, 829, 997
AjnI	CCWGG	1 cut(s)	512
AluBI	AGCT	7 cut(s)	37, 172, 266, 549, 714, 787, 983
AluI	AGCT	7 cut(s)	37, 172, 266, 549, 714, 787, 983
AlwI	GGATC	3 cut(s)	153, 234, 407
Aor13HI	TCCGGA	1 cut(s)	624
AoxI	GGCC	3 cut(s)	251, 285, 584
ApaI	GGGCCC	1 cut(s)	588
ApeKI	GCWGC	2 cut(s)	263, 787
AseI	ATTAAT	1 cut(s)	1046
AspS9I	GGNCC	3 cut(s)	584, 585, 622
AsuC2I	CCSGG	1 cut(s)	935
AsuHPI	GGTGA	2 cut(s)	50, 208
AvaII	GGWCC	1 cut(s)	622
BaeGI	GKGCMC	1 cut(s)	588
BaeI	ACNNNNGTAYC	2 cut(s)	847, 880
BanI	GGYRCC	1 cut(s)	560
BanII	GRGCYC	1 cut(s)	588
BauI	CACGAG	1 cut(s)	758
BbvI	GCAGC	2 cut(s)	275, 774
BccI	CCATC	3 cut(s)	70, 137, 575
BcgI	CGANNNNNNTGC	2 cut(s)	483, 517
BciT130I	CCWGG	1 cut(s)	514
BcnI	CCSGG	1 cut(s)	935
BfaI	CTAG	3 cut(s)	546, 557, 609
BfmI	CTRYAG	1 cut(s)	840
BisI	GCNGC	2 cut(s)	264, 788
BlpI	GCTNAGC	1 cut(s)	979
BlsI	GCNGC	2 cut(s)	265, 789
BmcAI	AGTACT	1 cut(s)	748
Bme1390I	CCNGG	2 cut(s)	514, 935
Bme18I	GGWCC	1 cut(s)	622
BmgT120I	GGNCC	3 cut(s)	584, 585, 622
BmiI	GGNNCC	2 cut(s)	562, 586
BmrFI	CCNGG	2 cut(s)	514, 935
BmsI	GCATC	1 cut(s)	621
Bpu1102I	GCTNAGC	1 cut(s)	979
BpuMI	CCSGG	1 cut(s)	935
BsaJI	CCNNGG	3 cut(s)	164, 221, 288
BsaWI	WCCGGW	1 cut(s)	624
Bsc4I	CCNNNNNNNGG	3 cut(s)	192, 380, 845
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	4 cut(s)	147, 284, 730, 970
BseAI	TCCGGA	1 cut(s)	624
BseBI	CCWGG	1 cut(s)	514
BseDI	CCNNGG	3 cut(s)	164, 221, 288
BseGI	GGATG	4 cut(s)	30, 62, 475, 586
BseLI	CCNNNNNNNGG	3 cut(s)	192, 380, 845
BseMII	CTCAG	1 cut(s)	993
BseNI	ACTGG	4 cut(s)	147, 284, 730, 970
BseRI	GAGGAG	1 cut(s)	923
BseSI	GKGCMC	1 cut(s)	588
BseXI	GCAGC	2 cut(s)	275, 774
BshFI	GGCC	3 cut(s)	253, 287, 586
BshNI	GGYRCC	1 cut(s)	560
BsiSI	CCGG	3 cut(s)	122, 625, 934
BslFI	GGGAC	1 cut(s)	950
BslI	CCNNNNNNNGG	3 cut(s)	192, 380, 845
BsmFI	GGGAC	1 cut(s)	950
BsmI	GAATGC	1 cut(s)	1003
BsnI	GGCC	3 cut(s)	253, 287, 586
Bsp120I	GGGCCC	1 cut(s)	584
Bsp1286I	GDGCHC	1 cut(s)	588
Bsp13I	TCCGGA	1 cut(s)	624
Bsp1407I	TGTACA	1 cut(s)	636
Bsp143I	GATC	6 cut(s)	145, 226, 399, 529, 1003, 1020
Bsp1720I	GCTNAGC	1 cut(s)	979
BspACI	CCGC	1 cut(s)	699
BspANI	GGCC	3 cut(s)	253, 287, 586
BspCNI	CTCAG	1 cut(s)	992
BspEI	TCCGGA	1 cut(s)	624
BspHI	TCATGA	1 cut(s)	402
BspLI	GGNNCC	2 cut(s)	562, 586
BspPI	GGATC	3 cut(s)	153, 234, 407
BspT107I	GGYRCC	1 cut(s)	560
BsrFI	RCCGGY	1 cut(s)	121
BsrGI	TGTACA	1 cut(s)	636
BsrI	ACTGG	4 cut(s)	147, 284, 730, 970
BssAI	RCCGGY	1 cut(s)	121
BssECI	CCNNGG	3 cut(s)	164, 221, 288
BssMI	GATC	6 cut(s)	145, 226, 399, 529, 1003, 1020
BssSI	CACGAG	1 cut(s)	758
BssT1I	CCWWGG	1 cut(s)	221
Bst2BI	CACGAG	1 cut(s)	758
Bst2UI	CCWGG	1 cut(s)	514
Bst4CI	ACNGT	1 cut(s)	941
Bst6I	CTCTTC	2 cut(s)	195, 824
BstAUI	TGTACA	1 cut(s)	636
BstC8I	GCNNGC	1 cut(s)	251
BstDEI	CTNAG	3 cut(s)	570, 979, 1037
BstDSI	CCRYGG	2 cut(s)	164, 288
BstENI	CCTNNNNNAGG	2 cut(s)	378, 843
BstF5I	GGATG	4 cut(s)	30, 62, 475, 586
BstKTI	GATC	6 cut(s)	148, 229, 402, 532, 1006, 1023
BstMBI	GATC	6 cut(s)	145, 226, 399, 529, 1003, 1020
BstMWI	GCNNNNNNNGC	2 cut(s)	546, 698
BstNI	CCWGG	1 cut(s)	514
BstSCI	CCNGG	2 cut(s)	512, 933
BstSFI	CTRYAG	1 cut(s)	840
BstSLI	GKGCMC	1 cut(s)	588
BstV1I	GCAGC	2 cut(s)	275, 774
BstX2I	RGATCY	1 cut(s)	145
BstXI	CCANNNNNNTGG	1 cut(s)	1049
BstYI	RGATCY	1 cut(s)	145
BsuRI	GGCC	3 cut(s)	253, 287, 586
BtgI	CCRYGG	2 cut(s)	164, 288
BtgZI	GCGATG	1 cut(s)	962
BtsCI	GGATG	4 cut(s)	30, 62, 475, 586
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	251
CciI	TCATGA	1 cut(s)	402
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	3 cut(s)	584, 585, 622
Csp6I	GTAC	6 cut(s)	157, 235, 412, 637, 747, 856
CviAII	CATG	3 cut(s)	403, 433, 1018
CviQI	GTAC	6 cut(s)	157, 235, 412, 637, 747, 856
DdeI	CTNAG	3 cut(s)	570, 979, 1037
DpnI	GATC	6 cut(s)	147, 228, 401, 531, 1005, 1022
DpnII	GATC	6 cut(s)	145, 226, 399, 529, 1003, 1020
Eam1104I	CTCTTC	2 cut(s)	195, 824
EarI	CTCTTC	2 cut(s)	195, 824
Eco130I	CCWWGG	1 cut(s)	221
Eco147I	AGGCCT	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	588
Eco47I	GGWCC	1 cut(s)	622
EcoNI	CCTNNNNNAGG	2 cut(s)	378, 843
EcoO109I	RGGNCCY	1 cut(s)	585
EcoRII	CCWGG	1 cut(s)	512
EcoT14I	CCWWGG	1 cut(s)	221
EcoT38I	GRGCYC	1 cut(s)	588
ErhI	CCWWGG	1 cut(s)	221
FaeI	CATG	3 cut(s)	406, 436, 1021
FaiI	YATR	9 cut(s)	153, 306, 404, 434, 484, 552, 710, 889, 1019
FaqI	GGGAC	1 cut(s)	950
FatI	CATG	3 cut(s)	402, 432, 1017
FblI	GTMKAC	1 cut(s)	966
Fnu4HI	GCNGC	2 cut(s)	264, 788
FokI	GGATG	4 cut(s)	17, 49, 482, 593
FriOI	GRGCYC	1 cut(s)	588
Fsp4HI	GCNGC	2 cut(s)	264, 788
FspBI	CTAG	3 cut(s)	546, 557, 609
GluI	GCNGC	2 cut(s)	264, 788
HaeIII	GGCC	3 cut(s)	253, 287, 586
HapII	CCGG	3 cut(s)	122, 625, 934
Hin1II	CATG	3 cut(s)	406, 436, 1021
HindIII	AAGCTT	1 cut(s)	712
HinfI	GANTC	1 cut(s)	48
HpaII	CCGG	3 cut(s)	122, 625, 934
HphI	GGTGA	2 cut(s)	50, 208
Hpy166II	GTNNAC	2 cut(s)	438, 967
Hpy188I	TCNGA	4 cut(s)	67, 93, 231, 378
Hpy188III	TCNNGA	5 cut(s)	403, 625, 677, 758, 1031
Hpy8I	GTNNAC	2 cut(s)	438, 967
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	4 cut(s)	199, 277, 764, 839
HpyCH4III	ACNGT	1 cut(s)	941
HpyCH4V	TGCA	3 cut(s)	504, 744, 1001
HpyF10VI	GCNNNNNNNGC	2 cut(s)	546, 698
HpyF3I	CTNAG	3 cut(s)	570, 979, 1037
Hsp92II	CATG	3 cut(s)	406, 436, 1021
Kpn2I	TCCGGA	1 cut(s)	624
Kzo9I	GATC	6 cut(s)	145, 226, 399, 529, 1003, 1020
LmnI	GCTCC	2 cut(s)	169, 516
Lsp1109I	GCAGC	2 cut(s)	275, 774
LweI	GCATC	1 cut(s)	621
MaeI	CTAG	3 cut(s)	546, 557, 609
MaeIII	GTNAC	3 cut(s)	103, 275, 868
MalI	GATC	6 cut(s)	147, 228, 401, 531, 1005, 1022
MboI	GATC	6 cut(s)	145, 226, 399, 529, 1003, 1020
MboII	GAAGA	5 cut(s)	83, 209, 212, 539, 841
MflI	RGATCY	1 cut(s)	145
MhlI	GDGCHC	1 cut(s)	588
MluCI	AATT	5 cut(s)	766, 919, 991, 1043, 1047
MmeI	TCCRAC	2 cut(s)	90, 447
MroI	TCCGGA	1 cut(s)	624
MseI	TTAA	5 cut(s)	342, 387, 819, 918, 1046
MslI	CAYNNNNRTG	2 cut(s)	431, 617
MspA1I	CMGCKG	2 cut(s)	266, 983
MspI	CCGG	3 cut(s)	122, 625, 934
MspR9I	CCNGG	2 cut(s)	514, 935
Mva1269I	GAATGC	1 cut(s)	1003
MvaI	CCWGG	1 cut(s)	514
MwoI	GCNNNNNNNGC	2 cut(s)	546, 698
NciI	CCSGG	1 cut(s)	935
NdeII	GATC	6 cut(s)	145, 226, 399, 529, 1003, 1020
NlaIII	CATG	3 cut(s)	406, 436, 1021
NlaIV	GGNNCC	2 cut(s)	562, 586
NmuCI	GTSAC	2 cut(s)	103, 868
PagI	TCATGA	1 cut(s)	402
PceI	AGGCCT	1 cut(s)	253
PctI	GAATGC	1 cut(s)	1003
PfeI	GAWTC	1 cut(s)	48
PkrI	GCNGC	2 cut(s)	265, 789
PshBI	ATTAAT	1 cut(s)	1046
Psp6I	CCWGG	1 cut(s)	512
PspGI	CCWGG	1 cut(s)	512
PspN4I	GGNNCC	2 cut(s)	562, 586
PspOMI	GGGCCC	1 cut(s)	584
PspPI	GGNCC	3 cut(s)	584, 585, 622
PsrI	GAACNNNNNNTAC	2 cut(s)	620, 652
PsuI	RGATCY	1 cut(s)	145
PvuII	CAGCTG	2 cut(s)	266, 983
RsaI	GTAC	6 cut(s)	158, 236, 413, 638, 748, 857
RsaNI	GTAC	6 cut(s)	157, 235, 412, 637, 747, 856
RseI	CAYNNNNRTG	2 cut(s)	431, 617
SaqAI	TTAA	5 cut(s)	342, 387, 819, 918, 1046
SatI	GCNGC	2 cut(s)	264, 788
Sau3AI	GATC	6 cut(s)	145, 226, 399, 529, 1003, 1020
Sau96I	GGNCC	3 cut(s)	584, 585, 622
ScaI	AGTACT	1 cut(s)	748
ScrFI	CCNGG	2 cut(s)	514, 935
SduI	GDGCHC	1 cut(s)	588
SfaNI	GCATC	1 cut(s)	621
SfcI	CTRYAG	1 cut(s)	840
SinI	GGWCC	1 cut(s)	622
SmiMI	CAYNNNNRTG	2 cut(s)	431, 617
Sse9I	AATT	5 cut(s)	766, 919, 991, 1043, 1047
SseBI	AGGCCT	1 cut(s)	253
SsiI	CCGC	1 cut(s)	699
SspMI	CTAG	3 cut(s)	546, 557, 609
StuI	AGGCCT	1 cut(s)	253
StyD4I	CCNGG	2 cut(s)	512, 933
StyI	CCWWGG	1 cut(s)	221
TaaI	ACNGT	1 cut(s)	941
TaqI	TCGA	7 cut(s)	458, 493, 593, 615, 926, 943, 1023
TasI	AATT	5 cut(s)	766, 919, 991, 1043, 1047
TatI	WGTACW	4 cut(s)	156, 411, 636, 746
TfiI	GAWTC	1 cut(s)	48
Tru1I	TTAA	5 cut(s)	342, 387, 819, 918, 1046
Tru9I	TTAA	5 cut(s)	342, 387, 819, 918, 1046
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	2 cut(s)	103, 868
TseI	GCWGC	2 cut(s)	263, 787
Tsp45I	GTSAC	2 cut(s)	103, 868
TspDTI	ATGAA	3 cut(s)	74, 419, 965
TspGWI	ACGGA	2 cut(s)	41, 407
TspRI	CASTG	1 cut(s)	142
VpaK11BI	GGWCC	1 cut(s)	622
VspI	ATTAAT	1 cut(s)	1046
XagI	CCTNNNNNAGG	2 cut(s)	378, 843
XcmI	CCANNNNNNNNNTGG	1 cut(s)	41
XmiI	GTMKAC	1 cut(s)	966
XspI	CTAG	3 cut(s)	546, 557, 609
ZrmI	AGTACT	1 cut(s)	748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.