Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013046.1

Orthogroup ID

OG0015653

Physical Location & Seq

Genomic Coordinates Forward (+)

20423 .. 22068

Gene Structure 1646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013046.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

atggccgagatggaacaaaccattgagaatcacaacattcaacttcctgctgggtttcgatttcacccatccgacgaagagcttatcgtccactacttgaaaaacaaagtcacttcatctcccctaccggcaaccatcataactgaattggacctatacaagtacaatccatgggagctaccaccaaaggccttgttcggagaagaggagtggtatttcttcactccaagggatcggaagtacccgaatggaaccaggcctaatagggcagctggtttgggttactggaaggctacagggactgataagcatattttcagttcttgtggaacgaaaagcattggggtgaagaaagcacttgtattttatacagggcatcctccaaaaggtgttaagactgagtggatcatgaacgagtatagattgcttgacaccacgatttggagtactacttcaaagcaaaaagggtctatgaggttggatgattgggttctatgccgggttcgccaaaaatgcaacaacagcaggaacatctgggaagatcaaaacactactcctagttataaactatctggccactttagacaaggggtggatgaacaggaagcaagccctagcatcgaaatggccaggagttatctatacaaagactgtccaatgttaccctacatttttgcctctcagaaagtgcttcctaccatcaaaaccacttcaagtataagctttcaggacactactgaaaatagaaaatcttgcagccctactcctgtttaccaagaggccgattcgaataaaatcaacaatgatggggaatttttagtttcttccctcgacagtttgatcaacccactgaagagaaagcctgaaggaaatgatcaacgtcggtcttcggttgcacccagcaagaagatatgtaatagagacgatcaaaaggaggaaattagtaatggatctatgatcaatccttggggaatagataaccagtttggagctgacagtttcaatgcagatcaatggagttccatgatccagtatccagaactcagtcagttaattgggtttccctgcaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

357

Amino Acids

40.83

Weight (kDa)

7.0

Isoelectric Point (pI)

46.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015653)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15670
malus_domestica	MD04G1100400.v1.1
prunus_persica	Prupe.6G238600_v2.0.a1
pyrus_communis	pycom04g09540
rosa_chinensis	RchiOBHm_Chr3g0469371
rosa_laevigata	RLG00000024355
rosa_multiflora	Rmu_co8391809.1_g000001 Rmu_sc0013046.1_g000008 Rmu_sc0013047.1_g000009
rosa_roxburghii	Rroxscaffold_6G00411950
rosa_rugosa	Rorug03G0101000
rosa_samantha	Rh3AG150200 Rh3BG173900 Rh3CG164900 Rh3DG201600
rosa_wichuraiana	Rw3G014160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	564
AccB7I	CCANNNNNTGG	1 cut(s)	441
AclWI	GGATC	4 cut(s)	240, 413, 958, 1021
AcoI	YGGCCR	3 cut(s)	3, 574, 627
AcsI	RAATTY	1 cut(s)	812
AcuI	CTGAAG	2 cut(s)	872, 885
AfaI	GTAC	3 cut(s)	164, 242, 448
AfiI	CCNNNNNNNGG	2 cut(s)	386, 441
AgsI	TTSAA	5 cut(s)	41, 100, 456, 714, 1003
AjnI	CCWGG	2 cut(s)	254, 629
AluBI	AGCT	5 cut(s)	82, 178, 272, 723, 992
AluI	AGCT	5 cut(s)	82, 178, 272, 723, 992
Alw26I	GTCTC	1 cut(s)	915
AlwI	GGATC	4 cut(s)	240, 413, 958, 1021
AlwNI	CAGNNNCTG	1 cut(s)	302
AoxI	GGCC	6 cut(s)	3, 189, 257, 574, 627, 780
ApeKI	GCWGC	2 cut(s)	269, 756
ApoI	RAATTY	1 cut(s)	812
AspS9I	GGNCC	1 cut(s)	151
AsuC2I	CCSGG	1 cut(s)	500
AsuHPI	GGTGA	2 cut(s)	56, 358
AsuII	TTCGAA	1 cut(s)	788
AvaII	GGWCC	1 cut(s)	151
BalI	TGGCCA	2 cut(s)	576, 629
BbsI	GAAGAC	1 cut(s)	879
BbvI	GCAGC	2 cut(s)	281, 768
BccI	CCATC	5 cut(s)	4, 76, 143, 707, 800
BciT130I	CCWGG	2 cut(s)	256, 631
BciVI	GTATCC	1 cut(s)	1044
BclI	TGATCA	3 cut(s)	840, 874, 957
BcnI	CCSGG	1 cut(s)	500
BcoDI	GTCTC	1 cut(s)	915
BfaI	CTAG	2 cut(s)	558, 615
BfmI	CTRYAG	1 cut(s)	294
BfuI	GTATCC	1 cut(s)	1044
BisI	GCNGC	2 cut(s)	270, 757
BlsI	GCNGC	2 cut(s)	271, 758
BmcAI	AGTACT	1 cut(s)	448
Bme1390I	CCNGG	3 cut(s)	256, 500, 631
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	151
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	3 cut(s)	256, 500, 631
BmsI	GCATC	2 cut(s)	385, 627
BpiI	GAAGAC	1 cut(s)	879
Bpu14I	TTCGAA	1 cut(s)	788
BpuMI	CCSGG	1 cut(s)	500
BsaJI	CCNNGG	3 cut(s)	170, 227, 965
BsaXI	ACNNNNNCTCC	2 cut(s)	103, 133
Bsc4I	CCNNNNNNNGG	2 cut(s)	386, 441
Bse118I	RCCGGY	1 cut(s)	127
Bse1I	ACTGG	3 cut(s)	290, 982, 1030
BseBI	CCWGG	2 cut(s)	256, 631
BseDI	CCNNGG	3 cut(s)	170, 227, 965
BseGI	GGATG	4 cut(s)	68, 376, 487, 601
BseLI	CCNNNNNNNGG	2 cut(s)	386, 441
BseMII	CTCAG	3 cut(s)	390, 695, 1057
BseNI	ACTGG	3 cut(s)	290, 982, 1030
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	2 cut(s)	281, 768
BseYI	CCCAGC	2 cut(s)	50, 899
BshFI	GGCC	6 cut(s)	5, 191, 259, 576, 629, 782
BsiSI	CCGG	2 cut(s)	128, 499
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	2 cut(s)	386, 441
BsmAI	GTCTC	1 cut(s)	915
BsmBI	CGTCTC	1 cut(s)	915
BsmFI	GGGAC	1 cut(s)	313
BsnI	GGCC	6 cut(s)	5, 191, 259, 576, 629, 782
Bsp119I	TTCGAA	1 cut(s)	788
Bsp19I	CCATGG	1 cut(s)	170
BspANI	GGCC	6 cut(s)	5, 191, 259, 576, 629, 782
BspCNI	CTCAG	3 cut(s)	391, 694, 1056
BspHI	TCATGA	1 cut(s)	408
BspLI	GGNNCC	1 cut(s)	253
BspPI	GGATC	4 cut(s)	240, 413, 958, 1021
BspQI	GCTCTTC	1 cut(s)	72
BspT104I	TTCGAA	1 cut(s)	788
BsrFI	RCCGGY	1 cut(s)	127
BsrI	ACTGG	3 cut(s)	290, 982, 1030
BssAI	RCCGGY	1 cut(s)	127
BssECI	CCNNGG	3 cut(s)	170, 227, 965
BssT1I	CCWWGG	3 cut(s)	170, 227, 965
Bst2UI	CCWGG	2 cut(s)	256, 631
Bst4CI	ACNGT	3 cut(s)	653, 836, 998
Bst6I	CTCTTC	3 cut(s)	72, 198, 848
BstBI	TTCGAA	1 cut(s)	788
BstC8I	GCNNGC	1 cut(s)	610
BstDEI	CTNAG	3 cut(s)	399, 681, 1043
BstDSI	CCRYGG	1 cut(s)	170
BstENI	CCTNNNNNAGG	1 cut(s)	384
BstF5I	GGATG	4 cut(s)	68, 376, 487, 601
BstMAI	GTCTC	1 cut(s)	915
BstMWI	GCNNNNNNNGC	3 cut(s)	504, 513, 522
BstNI	CCWGG	2 cut(s)	256, 631
BstSCI	CCNGG	3 cut(s)	254, 498, 629
BstSFI	CTRYAG	1 cut(s)	294
BstV1I	GCAGC	2 cut(s)	281, 768
BstV2I	GAAGAC	1 cut(s)	879
BstX2I	RGATCY	1 cut(s)	950
BstYI	RGATCY	1 cut(s)	950
BsuI	GTATCC	1 cut(s)	1044
BsuRI	GGCC	6 cut(s)	5, 191, 259, 576, 629, 782
BtgI	CCRYGG	1 cut(s)	170
BtsCI	GGATG	4 cut(s)	68, 376, 487, 601
BtsIMutI	CAGTG	1 cut(s)	848
Cac8I	GCNNGC	1 cut(s)	610
CaiI	CAGNNNCTG	1 cut(s)	302
CciI	TCATGA	1 cut(s)	408
Cfr10I	RCCGGY	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	151
Csp6I	GTAC	3 cut(s)	163, 241, 447
CviAII	CATG	3 cut(s)	171, 409, 1024
CviQI	GTAC	3 cut(s)	163, 241, 447
DdeI	CTNAG	3 cut(s)	399, 681, 1043
EaeI	YGGCCR	3 cut(s)	3, 574, 627
Eam1104I	CTCTTC	3 cut(s)	72, 198, 848
EarI	CTCTTC	3 cut(s)	72, 198, 848
Eco130I	CCWWGG	3 cut(s)	170, 227, 965
Eco147I	AGGCCT	2 cut(s)	191, 259
Eco47I	GGWCC	1 cut(s)	151
Eco57I	CTGAAG	2 cut(s)	872, 885
EcoNI	CCTNNNNNAGG	1 cut(s)	384
EcoRII	CCWGG	2 cut(s)	254, 629
EcoT14I	CCWWGG	3 cut(s)	170, 227, 965
ErhI	CCWWGG	3 cut(s)	170, 227, 965
Esp3I	CGTCTC	1 cut(s)	915
FaeI	CATG	3 cut(s)	174, 412, 1027
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	3 cut(s)	170, 408, 1023
FbaI	TGATCA	3 cut(s)	840, 874, 957
Fnu4HI	GCNGC	2 cut(s)	270, 757
FokI	GGATG	4 cut(s)	55, 363, 494, 608
Fsp4HI	GCNGC	2 cut(s)	270, 757
FspBI	CTAG	2 cut(s)	558, 615
GluI	GCNGC	2 cut(s)	270, 757
GsaI	CCCAGC	2 cut(s)	54, 903
HaeIII	GGCC	6 cut(s)	5, 191, 259, 576, 629, 782
HapII	CCGG	2 cut(s)	128, 499
Hin1II	CATG	3 cut(s)	174, 412, 1027
HindIII	AAGCTT	1 cut(s)	721
HinfI	GANTC	2 cut(s)	28, 785
HpaII	CCGG	2 cut(s)	128, 499
HphI	GGTGA	2 cut(s)	56, 358
Hpy166II	GTNNAC	2 cut(s)	91, 772
Hpy188I	TCNGA	4 cut(s)	73, 200, 237, 684
Hpy188III	TCNNGA	3 cut(s)	409, 728, 1037
Hpy8I	GTNNAC	2 cut(s)	91, 772
Hpy99I	CGWCG	2 cut(s)	77, 885
HpyAV	CCTTC	2 cut(s)	283, 860
HpyCH4III	ACNGT	3 cut(s)	653, 836, 998
HpyCH4IV	ACGT	1 cut(s)	880
HpyCH4V	TGCA	5 cut(s)	516, 756, 896, 1007, 1068
HpyF10VI	GCNNNNNNNGC	3 cut(s)	504, 513, 522
HpyF3I	CTNAG	3 cut(s)	399, 681, 1043
HpySE526I	ACGT	1 cut(s)	880
Hsp92II	CATG	3 cut(s)	174, 412, 1027
Ksp22I	TGATCA	3 cut(s)	840, 874, 957
LguI	GCTCTTC	1 cut(s)	72
LmnI	GCTCC	2 cut(s)	175, 989
Lsp1109I	GCAGC	2 cut(s)	281, 768
LweI	GCATC	2 cut(s)	385, 627
MaeI	CTAG	2 cut(s)	558, 615
MaeII	ACGT	1 cut(s)	880
MaeIII	GTNAC	3 cut(s)	109, 281, 660
MboII	GAAGA	9 cut(s)	89, 211, 215, 361, 551, 816, 865, 879, 919
MflI	RGATCY	1 cut(s)	950
MlsI	TGGCCA	2 cut(s)	576, 629
MluCI	AATT	4 cut(s)	146, 812, 939, 1053
MluNI	TGGCCA	2 cut(s)	576, 629
MmeI	TCCRAC	2 cut(s)	96, 459
MnlI	CCTC	7 cut(s)	199, 390, 468, 688, 772, 839, 928
Mox20I	TGGCCA	2 cut(s)	576, 629
MscI	TGGCCA	2 cut(s)	576, 629
MseI	TTAA	2 cut(s)	393, 1052
MslI	CAYNNNNRTG	2 cut(s)	344, 623
Msp20I	TGGCCA	2 cut(s)	576, 629
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	2 cut(s)	128, 499
MspR9I	CCNGG	3 cut(s)	256, 500, 631
MvaI	CCWGG	2 cut(s)	256, 631
MwoI	GCNNNNNNNGC	3 cut(s)	504, 513, 522
NciI	CCSGG	1 cut(s)	500
NcoI	CCATGG	1 cut(s)	170
NlaIII	CATG	3 cut(s)	174, 412, 1027
NlaIV	GGNNCC	1 cut(s)	253
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	109
NspV	TTCGAA	1 cut(s)	788
PagI	TCATGA	1 cut(s)	408
PceI	AGGCCT	2 cut(s)	191, 259
PciSI	GCTCTTC	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	28, 785
PflMI	CCANNNNNTGG	1 cut(s)	441
PkrI	GCNGC	2 cut(s)	271, 758
PsiI	TTATAA	1 cut(s)	564
Psp6I	CCWGG	2 cut(s)	254, 629
PspFI	CCCAGC	2 cut(s)	50, 899
PspGI	CCWGG	2 cut(s)	254, 629
PspN4I	GGNNCC	1 cut(s)	253
PspPI	GGNCC	1 cut(s)	151
PstNI	CAGNNNCTG	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	950
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	3 cut(s)	164, 242, 448
RsaNI	GTAC	3 cut(s)	163, 241, 447
RseI	CAYNNNNRTG	2 cut(s)	344, 623
SapI	GCTCTTC	1 cut(s)	72
SaqAI	TTAA	2 cut(s)	393, 1052
SatI	GCNGC	2 cut(s)	270, 757
Sau96I	GGNCC	1 cut(s)	151
ScaI	AGTACT	1 cut(s)	448
ScrFI	CCNGG	3 cut(s)	256, 500, 631
SetI	ASST	9 cut(s)	84, 156, 180, 274, 391, 479, 725, 883, 994
SfaNI	GCATC	2 cut(s)	385, 627
SfcI	CTRYAG	1 cut(s)	294
SfuI	TTCGAA	1 cut(s)	788
SinI	GGWCC	1 cut(s)	151
SmiMI	CAYNNNNRTG	2 cut(s)	344, 623
Sse9I	AATT	4 cut(s)	146, 812, 939, 1053
SseBI	AGGCCT	2 cut(s)	191, 259
SspMI	CTAG	2 cut(s)	558, 615
StuI	AGGCCT	2 cut(s)	191, 259
StyD4I	CCNGG	3 cut(s)	254, 498, 629
StyI	CCWWGG	3 cut(s)	170, 227, 965
TaaI	ACNGT	3 cut(s)	653, 836, 998
TaiI	ACGT	1 cut(s)	883
TaqI	TCGA	4 cut(s)	58, 621, 788, 831
TaqII	GACCGA	1 cut(s)	873
TasI	AATT	4 cut(s)	146, 812, 939, 1053
TatI	WGTACW	2 cut(s)	162, 446
TfiI	GAWTC	2 cut(s)	28, 785
Tru1I	TTAA	2 cut(s)	393, 1052
Tru9I	TTAA	2 cut(s)	393, 1052
TscAI	CASTG	1 cut(s)	855
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	2 cut(s)	269, 756
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	3 cut(s)	105, 425, 612
TspRI	CASTG	1 cut(s)	855
Van91I	CCANNNNNTGG	1 cut(s)	441
VpaK11BI	GGWCC	1 cut(s)	151
XagI	CCTNNNNNAGG	1 cut(s)	384
XapI	RAATTY	1 cut(s)	812
XspI	CTAG	2 cut(s)	558, 615
ZrmI	AGTACT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.