Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0015653

Physical Location & Seq

Genomic Coordinates Forward (+)

12231017 .. 12232491

Gene Structure 1475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g09540.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGAGAGGGAAAACCAAGCCACCGAAAACATCCAGCTTCCTGCTGGATTCCGTTTTCACCCATCCGACGAAGAACTCATCGTTCATTATCTAAAAAACAAAGTCACTTCATGTCCTCTACCGGCAACCATCATCACTGAACTGGATCTGTATAAGTACAACCCGTGGGAGCTACCACCAAAAGCCTCCTTCGGGGAAGAAGAGTGGTATTTTTTCACCCCAAGGGATCGGAAGTACCCGAACGGAAGCAGGCCTAATAGAGCAGCTGGTTTGGGTTACTGGAAGGCCACGGGAACTGATAAGCATATTTTTAGTTCTTGTGGAACAAAAAGCATTGGGGTTAAAAAAGCACTTGTGTTCTACACAGGACACCCTCCGAAAGGTGTTAAGACGGAGTGGATCATGAACGAGTACAGATTGCTTGACACAACCATGTGGACTTCAAAGCAAAAAGGGTCGATGAGGGTAAGTTTCATCACTTCATATCCTGACGAATATGCATGTGCCTACACTAAGCAAGTGGATGAGCCCTGCTCGAATGATACAAACCCTAGCATCGAAATGGTCCGGAACTATCTGTACAAAGATTGTCCAATGCTACCCTACATTTTTGCCTCTCCTGAACTTCCTTACGCTAAAACCACTTCAAGCATAAGCTTTCAGGGAACTGGAAACGCGAAATCTTGCAGTACTTCCCTTCACGAGAACAATTCAAACAAAACCAATGAGCTGCTTCTAGTTTCTTCCCGTGATGATTTGATTAACCCTTTGAAGAGAAAACCTACAGAAGGAAATGGGTACAAGAGTTTTGTCACACCAAGCAAGAGGATATGTAGCAGAGATTACAAGGAGGAGGAAGTTAATTCCTCGACCAGCCGGGACTGTCGAGCGATGAACTTGTGGGGTGTAGACCAGTCTGGCTCAGCTGATAATAATTTGAATGCAGACCAATGGAGTTCCATGACCCAGTATCAAGAACTTAGCCAATTAATTGGCTTTCAGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

336

Amino Acids

38.11

Weight (kDa)

6.95

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015653)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15670
malus_domestica	MD04G1100400.v1.1
prunus_persica	Prupe.6G238600_v2.0.a1
pyrus_communis	pycom04g09540
rosa_chinensis	RchiOBHm_Chr3g0469371
rosa_laevigata	RLG00000024355
rosa_multiflora	Rmu_co8391809.1_g000001 Rmu_sc0013046.1_g000008 Rmu_sc0013047.1_g000009
rosa_roxburghii	Rroxscaffold_6G00411950
rosa_rugosa	Rorug03G0101000
rosa_samantha	Rh3AG150200 Rh3BG173900 Rh3CG164900 Rh3DG201600
rosa_wichuraiana	Rw3G014160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	909
AccII	CGCG	1 cut(s)	677
AccIII	TCCGGA	1 cut(s)	567
AclWI	GGATC	3 cut(s)	153, 234, 407
AfaI	GTAC	6 cut(s)	158, 236, 413, 581, 691, 800
AfiI	CCNNNNNNNGG	3 cut(s)	192, 380, 788
AgsI	TTSAA	5 cut(s)	444, 648, 714, 772, 940
AluBI	AGCT	6 cut(s)	37, 172, 266, 657, 730, 926
AluI	AGCT	6 cut(s)	37, 172, 266, 657, 730, 926
AlwI	GGATC	3 cut(s)	153, 234, 407
Aor13HI	TCCGGA	1 cut(s)	567
AoxI	GGCC	2 cut(s)	251, 285
ApeKI	GCWGC	2 cut(s)	263, 730
AseI	ATTAAT	1 cut(s)	989
AspS9I	GGNCC	1 cut(s)	565
AsuC2I	CCSGG	1 cut(s)	878
AsuHPI	GGTGA	2 cut(s)	50, 208
AvaII	GGWCC	1 cut(s)	565
BaeI	ACNNNNGTAYC	2 cut(s)	790, 823
BanII	GRGCYC	1 cut(s)	531
BauI	CACGAG	1 cut(s)	701
BbvI	GCAGC	2 cut(s)	275, 717
BccI	CCATC	2 cut(s)	70, 137
BcnI	CCSGG	1 cut(s)	878
BfaI	CTAG	2 cut(s)	552, 737
BfmI	CTRYAG	1 cut(s)	783
BisI	GCNGC	2 cut(s)	264, 731
BlpI	GCTNAGC	1 cut(s)	922
BlsI	GCNGC	2 cut(s)	265, 732
BmcAI	AGTACT	1 cut(s)	691
Bme1390I	CCNGG	1 cut(s)	878
Bme18I	GGWCC	1 cut(s)	565
BmgT120I	GGNCC	1 cut(s)	565
BmrFI	CCNGG	1 cut(s)	878
BmrI	ACTGGG	1 cut(s)	961
BmsI	GCATC	1 cut(s)	564
BmuI	ACTGGG	1 cut(s)	961
BplI	GAGNNNNNCTC	2 cut(s)	518, 550
Bpu1102I	GCTNAGC	1 cut(s)	922
BpuMI	CCSGG	1 cut(s)	878
BsaJI	CCNNGG	3 cut(s)	164, 221, 288
BsaWI	WCCGGW	1 cut(s)	567
Bsc4I	CCNNNNNNNGG	3 cut(s)	192, 380, 788
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	5 cut(s)	147, 284, 673, 913, 967
BseAI	TCCGGA	1 cut(s)	567
BseDI	CCNNGG	3 cut(s)	164, 221, 288
BseGI	GGATG	3 cut(s)	30, 62, 529
BseLI	CCNNNNNNNGG	3 cut(s)	192, 380, 788
BseMII	CTCAG	1 cut(s)	936
BseNI	ACTGG	5 cut(s)	147, 284, 673, 913, 967
BseRI	GAGGAG	1 cut(s)	866
BseXI	GCAGC	2 cut(s)	275, 717
Bsh1236I	CGCG	1 cut(s)	677
BshFI	GGCC	2 cut(s)	253, 287
BsiSI	CCGG	3 cut(s)	122, 568, 877
BslFI	GGGAC	1 cut(s)	893
BslI	CCNNNNNNNGG	3 cut(s)	192, 380, 788
BsmFI	GGGAC	1 cut(s)	893
BsmI	GAATGC	1 cut(s)	946
BsnI	GGCC	2 cut(s)	253, 287
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp13I	TCCGGA	1 cut(s)	567
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	3 cut(s)	145, 226, 399
Bsp1720I	GCTNAGC	1 cut(s)	922
BspANI	GGCC	2 cut(s)	253, 287
BspCNI	CTCAG	1 cut(s)	935
BspEI	TCCGGA	1 cut(s)	567
BspFNI	CGCG	1 cut(s)	677
BspHI	TCATGA	1 cut(s)	402
BspPI	GGATC	3 cut(s)	153, 234, 407
BsrFI	RCCGGY	1 cut(s)	121
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	5 cut(s)	147, 284, 673, 913, 967
BssAI	RCCGGY	1 cut(s)	121
BssECI	CCNNGG	3 cut(s)	164, 221, 288
BssMI	GATC	3 cut(s)	145, 226, 399
BssSI	CACGAG	1 cut(s)	701
BssT1I	CCWWGG	1 cut(s)	221
Bst2BI	CACGAG	1 cut(s)	701
Bst4CI	ACNGT	1 cut(s)	884
Bst6I	CTCTTC	2 cut(s)	195, 767
BstAUI	TGTACA	1 cut(s)	579
BstC8I	GCNNGC	1 cut(s)	251
BstDEI	CTNAG	3 cut(s)	513, 922, 980
BstDSI	CCRYGG	2 cut(s)	164, 288
BstENI	CCTNNNNNAGG	2 cut(s)	378, 786
BstF5I	GGATG	3 cut(s)	30, 62, 529
BstFNI	CGCG	1 cut(s)	677
BstKTI	GATC	3 cut(s)	148, 229, 402
BstMBI	GATC	3 cut(s)	145, 226, 399
BstNSI	RCATGY	1 cut(s)	504
BstSCI	CCNGG	1 cut(s)	876
BstSFI	CTRYAG	1 cut(s)	783
BstUI	CGCG	1 cut(s)	677
BstV1I	GCAGC	2 cut(s)	275, 717
BstX2I	RGATCY	1 cut(s)	145
BstXI	CCANNNNNNTGG	1 cut(s)	992
BstYI	RGATCY	1 cut(s)	145
BsuRI	GGCC	2 cut(s)	253, 287
BtgI	CCRYGG	2 cut(s)	164, 288
BtgZI	GCGATG	1 cut(s)	905
BtsCI	GGATG	3 cut(s)	30, 62, 529
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	251
CciI	TCATGA	1 cut(s)	402
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	565
Csp6I	GTAC	6 cut(s)	157, 235, 412, 580, 690, 799
CviAII	CATG	5 cut(s)	111, 403, 433, 501, 961
CviQI	GTAC	6 cut(s)	157, 235, 412, 580, 690, 799
DdeI	CTNAG	3 cut(s)	513, 922, 980
DpnI	GATC	3 cut(s)	147, 228, 401
DpnII	GATC	3 cut(s)	145, 226, 399
Eam1104I	CTCTTC	2 cut(s)	195, 767
EarI	CTCTTC	2 cut(s)	195, 767
Eco130I	CCWWGG	1 cut(s)	221
Eco147I	AGGCCT	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	531
Eco47I	GGWCC	1 cut(s)	565
EcoNI	CCTNNNNNAGG	2 cut(s)	378, 786
EcoT14I	CCWWGG	1 cut(s)	221
EcoT22I	ATGCAT	1 cut(s)	502
EcoT38I	GRGCYC	1 cut(s)	531
ErhI	CCWWGG	1 cut(s)	221
FaeI	CATG	5 cut(s)	114, 406, 436, 504, 964
FaqI	GGGAC	1 cut(s)	893
FatI	CATG	5 cut(s)	110, 402, 432, 500, 960
FblI	GTMKAC	1 cut(s)	909
Fnu4HI	GCNGC	2 cut(s)	264, 731
FokI	GGATG	3 cut(s)	17, 49, 536
FriOI	GRGCYC	1 cut(s)	531
Fsp4HI	GCNGC	2 cut(s)	264, 731
FspBI	CTAG	2 cut(s)	552, 737
GluI	GCNGC	2 cut(s)	264, 731
HaeIII	GGCC	2 cut(s)	253, 287
HapII	CCGG	3 cut(s)	122, 568, 877
Hin1II	CATG	5 cut(s)	114, 406, 436, 504, 964
HindIII	AAGCTT	1 cut(s)	655
HinfI	GANTC	1 cut(s)	48
HpaII	CCGG	3 cut(s)	122, 568, 877
HphI	GGTGA	2 cut(s)	50, 208
Hpy166II	GTNNAC	2 cut(s)	438, 910
Hpy188I	TCNGA	3 cut(s)	67, 231, 378
Hpy188III	TCNNGA	6 cut(s)	403, 488, 568, 620, 701, 974
Hpy8I	GTNNAC	2 cut(s)	438, 910
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	4 cut(s)	199, 277, 707, 782
HpyCH4III	ACNGT	1 cut(s)	884
HpyCH4V	TGCA	3 cut(s)	500, 687, 944
HpyF3I	CTNAG	3 cut(s)	513, 922, 980
Hsp92II	CATG	5 cut(s)	114, 406, 436, 504, 964
Kpn2I	TCCGGA	1 cut(s)	567
Kzo9I	GATC	3 cut(s)	145, 226, 399
LmnI	GCTCC	1 cut(s)	169
Lsp1109I	GCAGC	2 cut(s)	275, 717
LweI	GCATC	1 cut(s)	564
MaeI	CTAG	2 cut(s)	552, 737
MaeIII	GTNAC	3 cut(s)	103, 275, 811
MalI	GATC	3 cut(s)	147, 228, 401
MboI	GATC	3 cut(s)	145, 226, 399
MboII	GAAGA	5 cut(s)	83, 209, 212, 735, 784
MflI	RGATCY	1 cut(s)	145
MhlI	GDGCHC	1 cut(s)	531
MluCI	AATT	5 cut(s)	709, 862, 934, 986, 990
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	9 cut(s)	126, 196, 384, 456, 625, 819, 844, 847, 877
Mph1103I	ATGCAT	1 cut(s)	502
MroI	TCCGGA	1 cut(s)	567
MseI	TTAA	5 cut(s)	342, 387, 762, 861, 989
MslI	CAYNNNNRTG	2 cut(s)	431, 560
MspA1I	CMGCKG	2 cut(s)	266, 926
MspI	CCGG	3 cut(s)	122, 568, 877
MspR9I	CCNGG	1 cut(s)	878
Mva1269I	GAATGC	1 cut(s)	946
MvnI	CGCG	1 cut(s)	677
NciI	CCSGG	1 cut(s)	878
NdeII	GATC	3 cut(s)	145, 226, 399
NlaIII	CATG	5 cut(s)	114, 406, 436, 504, 964
NmuCI	GTSAC	2 cut(s)	103, 811
NsiI	ATGCAT	1 cut(s)	502
NspI	RCATGY	1 cut(s)	504
PagI	TCATGA	1 cut(s)	402
PceI	AGGCCT	1 cut(s)	253
PctI	GAATGC	1 cut(s)	946
PfeI	GAWTC	1 cut(s)	48
PkrI	GCNGC	2 cut(s)	265, 732
PshBI	ATTAAT	1 cut(s)	989
PspPI	GGNCC	1 cut(s)	565
PsrI	GAACNNNNNNTAC	2 cut(s)	563, 595
PsuI	RGATCY	1 cut(s)	145
PvuII	CAGCTG	2 cut(s)	266, 926
RsaI	GTAC	6 cut(s)	158, 236, 413, 581, 691, 800
RsaNI	GTAC	6 cut(s)	157, 235, 412, 580, 690, 799
RseI	CAYNNNNRTG	2 cut(s)	431, 560
SaqAI	TTAA	5 cut(s)	342, 387, 762, 861, 989
SatI	GCNGC	2 cut(s)	264, 731
Sau3AI	GATC	3 cut(s)	145, 226, 399
Sau96I	GGNCC	1 cut(s)	565
ScaI	AGTACT	1 cut(s)	691
ScrFI	CCNGG	1 cut(s)	878
SduI	GDGCHC	1 cut(s)	531
SetI	ASST	9 cut(s)	39, 174, 268, 385, 659, 732, 784, 928, 1005
SfaNI	GCATC	1 cut(s)	564
SfcI	CTRYAG	1 cut(s)	783
SinI	GGWCC	1 cut(s)	565
SmiMI	CAYNNNNRTG	2 cut(s)	431, 560
Sse9I	AATT	5 cut(s)	709, 862, 934, 986, 990
SseBI	AGGCCT	1 cut(s)	253
SspMI	CTAG	2 cut(s)	552, 737
StuI	AGGCCT	1 cut(s)	253
StyD4I	CCNGG	1 cut(s)	876
StyI	CCWWGG	1 cut(s)	221
TaaI	ACNGT	1 cut(s)	884
TaqI	TCGA	5 cut(s)	458, 536, 558, 869, 886
TasI	AATT	5 cut(s)	709, 862, 934, 986, 990
TatI	WGTACW	4 cut(s)	156, 411, 579, 689
TfiI	GAWTC	1 cut(s)	48
Tru1I	TTAA	5 cut(s)	342, 387, 762, 861, 989
Tru9I	TTAA	5 cut(s)	342, 387, 762, 861, 989
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	2 cut(s)	103, 811
TseI	GCWGC	2 cut(s)	263, 730
Tsp45I	GTSAC	2 cut(s)	103, 811
TspDTI	ATGAA	6 cut(s)	74, 99, 419, 463, 471, 908
TspGWI	ACGGA	3 cut(s)	41, 258, 407
TspRI	CASTG	1 cut(s)	142
VpaK11BI	GGWCC	1 cut(s)	565
VspI	ATTAAT	1 cut(s)	989
XagI	CCTNNNNNAGG	2 cut(s)	378, 786
XceI	RCATGY	1 cut(s)	504
XcmI	CCANNNNNNNNNTGG	1 cut(s)	41
XmiI	GTMKAC	1 cut(s)	909
XspI	CTAG	2 cut(s)	552, 737
ZrmI	AGTACT	1 cut(s)	691
Zsp2I	ATGCAT	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.