Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0015653

Physical Location & Seq

Genomic Coordinates Forward (+)

23830614 .. 23832830

Gene Structure 2217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G238600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGAGAGGGAACAACAAACCTCTGATAACATTCAGCTTCCTGCTGGGTTCAGATTTCACCCATCTGATGAAGAACTCATCGTCCACTATTTGAAAAACAAAGTCACTTCAAGTCCACTACCTGCAACCATCATCACTGAATTGGATCTCTACAAGTATAATCCATGGGAGCTGCCAGCCAAAGCCTCCTTCGGAGAAGAAGAGTGGTATTTTTTCACCCCGAGAGATCGGAAGTACCCGAATGGGAGCAGGCCTAACAGAGCAGCTGGTTTGGGTTACTGGAAGGCTACAGGAACTGATAAACATATTTTCAGTTCTTGTGGAACAAAAAGCATTGGGGTGAAGAAGGCACTTGTGTTCTACACAGGACACCCTCCAAAGGGTGTCAAGACAGAGTGGATCATGAATGAGTATAGATTGCTTGACACAACCATGTGGTCTTCAAAGCAAAAAGGGTCTATGAGGTTGGATGATTGGGTGCTATGTCGGGTTCGACAAAAATGCAACGGCAGCAGGAGCATTTGGGAAGATCAAAACAGTCCTCCTAGCTATAAACTAGGTGCCTACACCAAGCAAGCGGATGAGAAATGTTCAAAGGACACAAACCCTAGCATCGAAATGGTCAGAAACTATCTGTACAAAGATTGTCCAATGTTGCCCTACATTTTTGCCTCCCCTGAACTTCCATACACTAAAACCACTTCAAGCATAAGCTTTCTGGGTAGTGGAGACACAAAATCTTGCACTACAATTCACGAGAACGATTCATCCAATAAGAACAACGGGCAGCTTTTAGCTTCTTCCCTTGAAAGTTTGATCAACCCTTTCAAGAGAAAGCCTGCAGCAGAAGGAAATGGACACCACCAGAGTTTTGTAACACCAAGCAAGAGGATATGTAGCAGAGAATATCAGGAGGAAGTTAGCACATCGATTGGCCGGGACGGTTGCTCAATGAATTTCTGGGGAGTAGACCACTCTGGATCAGCTGAAAATAATTTCAATGCAGATCAATGGAGCTCCATGATCCAATATCAAGAACTCAGTCAATTAATTGGCTTTCAGTGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

357

Amino Acids

40.46

Weight (kDa)

8.25

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015653)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15670
malus_domestica	MD04G1100400.v1.1
prunus_persica	Prupe.6G238600_v2.0.a1
pyrus_communis	pycom04g09540
rosa_chinensis	RchiOBHm_Chr3g0469371
rosa_laevigata	RLG00000024355
rosa_multiflora	Rmu_co8391809.1_g000001 Rmu_sc0013046.1_g000008 Rmu_sc0013047.1_g000009
rosa_roxburghii	Rroxscaffold_6G00411950
rosa_rugosa	Rorug03G0101000
rosa_samantha	Rh3AG150200 Rh3BG173900 Rh3CG164900 Rh3DG201600
rosa_wichuraiana	Rw3G014160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	130
AccB1I	GGYRCC	1 cut(s)	560
AccI	GTMKAC	1 cut(s)	969
AciI	CCGC	1 cut(s)	578
AclWI	GGATC	4 cut(s)	153, 407, 988, 1018
AcoI	YGGCCR	1 cut(s)	934
AcsI	RAATTY	1 cut(s)	955
AfaI	GTAC	2 cut(s)	236, 638
AfiI	CCNNNNNNNGG	2 cut(s)	379, 380
AgsI	TTSAA	8 cut(s)	94, 111, 444, 594, 705, 809, 829, 1000
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AloI	GAACNNNNNNTCC	4 cut(s)	66, 98, 752, 784
AluBI	AGCT	9 cut(s)	37, 172, 266, 549, 714, 790, 797, 986, 1017
AluI	AGCT	9 cut(s)	37, 172, 266, 549, 714, 790, 797, 986, 1017
Alw21I	GWGCWC	1 cut(s)	1019
Alw26I	GTCTC	1 cut(s)	723
AlwI	GGATC	4 cut(s)	153, 407, 988, 1018
AlwNI	CAGNNNCTG	1 cut(s)	296
Ama87I	CYCGRG	1 cut(s)	220
AoxI	GGCC	2 cut(s)	251, 934
ApeKI	GCWGC	5 cut(s)	172, 263, 510, 787, 842
ApoI	RAATTY	1 cut(s)	955
AseI	ATTAAT	1 cut(s)	1049
AsuC2I	CCSGG	1 cut(s)	938
AsuHPI	GGTGA	3 cut(s)	50, 208, 352
AvaI	CYCGRG	1 cut(s)	220
BanI	GGYRCC	1 cut(s)	560
BanII	GRGCYC	1 cut(s)	1019
BauI	CACGAG	1 cut(s)	755
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	1019
BbvI	GCAGC	5 cut(s)	159, 275, 522, 799, 854
BccI	CCATC	2 cut(s)	70, 137
BceAI	ACGGC	1 cut(s)	523
BcgI	CGANNNNNNTGC	2 cut(s)	483, 517
BclI	TGATCA	1 cut(s)	816
BcnI	CCSGG	1 cut(s)	938
BcoDI	GTCTC	1 cut(s)	723
BfaI	CTAG	3 cut(s)	546, 557, 609
BfmI	CTRYAG	2 cut(s)	288, 840
BfuAI	ACCTGC	1 cut(s)	130
BisI	GCNGC	5 cut(s)	173, 264, 511, 788, 843
BlsI	GCNGC	5 cut(s)	174, 265, 512, 789, 844
Bme1390I	CCNGG	1 cut(s)	938
BmeT110I	CYCGRG	1 cut(s)	220
BmiI	GGNNCC	1 cut(s)	562
BmrFI	CCNGG	1 cut(s)	938
BmsI	GCATC	1 cut(s)	621
BpiI	GAAGAC	1 cut(s)	432
BpuMI	CCSGG	1 cut(s)	938
Bsa29I	ATCGAT	1 cut(s)	929
BsaJI	CCNNGG	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	2 cut(s)	379, 380
Bse1I	ACTGG	1 cut(s)	284
BseCI	ATCGAT	1 cut(s)	929
BseDI	CCNNGG	1 cut(s)	164
BseGI	GGATG	3 cut(s)	475, 586, 767
BseLI	CCNNNNNNNGG	2 cut(s)	379, 380
BseMII	CTCAG	1 cut(s)	1054
BseNI	ACTGG	1 cut(s)	284
BseXI	GCAGC	5 cut(s)	159, 275, 522, 799, 854
BseYI	CCCAGC	1 cut(s)	44
BshFI	GGCC	2 cut(s)	253, 936
BshNI	GGYRCC	1 cut(s)	560
BshVI	ATCGAT	1 cut(s)	929
BsiHKAI	GWGCWC	1 cut(s)	1019
BsiHKCI	CYCGRG	1 cut(s)	220
BsiSI	CCGG	1 cut(s)	937
BslFI	GGGAC	1 cut(s)	953
BslI	CCNNNNNNNGG	2 cut(s)	379, 380
BsmAI	GTCTC	1 cut(s)	723
BsmFI	GGGAC	1 cut(s)	953
BsnI	GGCC	2 cut(s)	253, 936
BsoBI	CYCGRG	1 cut(s)	220
Bsp1286I	GDGCHC	1 cut(s)	1019
Bsp1407I	TGTACA	1 cut(s)	636
Bsp143I	GATC	8 cut(s)	145, 226, 399, 529, 816, 980, 1006, 1023
Bsp19I	CCATGG	1 cut(s)	164
BspACI	CCGC	1 cut(s)	578
BspANI	GGCC	2 cut(s)	253, 936
BspCNI	CTCAG	1 cut(s)	1053
BspDI	ATCGAT	1 cut(s)	929
BspHI	TCATGA	1 cut(s)	402
BspLI	GGNNCC	1 cut(s)	562
BspMAI	CTGCAG	1 cut(s)	844
BspMI	ACCTGC	1 cut(s)	130
BspPI	GGATC	4 cut(s)	153, 407, 988, 1018
BspT107I	GGYRCC	1 cut(s)	560
BsrGI	TGTACA	1 cut(s)	636
BsrI	ACTGG	1 cut(s)	284
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	8 cut(s)	145, 226, 399, 529, 816, 980, 1006, 1023
BssSI	CACGAG	1 cut(s)	755
BssT1I	CCWWGG	1 cut(s)	164
Bst2BI	CACGAG	1 cut(s)	755
Bst4CI	ACNGT	2 cut(s)	539, 944
Bst6I	CTCTTC	1 cut(s)	195
BstAUI	TGTACA	1 cut(s)	636
BstC8I	GCNNGC	4 cut(s)	177, 251, 576, 840
BstDEI	CTNAG	1 cut(s)	1040
BstDSI	CCRYGG	1 cut(s)	164
BstF5I	GGATG	3 cut(s)	475, 586, 767
BstKTI	GATC	8 cut(s)	148, 229, 402, 532, 819, 983, 1009, 1026
BstMAI	GTCTC	1 cut(s)	723
BstMBI	GATC	8 cut(s)	145, 226, 399, 529, 816, 980, 1006, 1023
BstMWI	GCNNNNNNNGC	3 cut(s)	510, 516, 1062
BstSCI	CCNGG	1 cut(s)	936
BstSFI	CTRYAG	2 cut(s)	288, 840
BstV1I	GCAGC	5 cut(s)	159, 275, 522, 799, 854
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
Bsu15I	ATCGAT	1 cut(s)	929
BsuRI	GGCC	2 cut(s)	253, 936
BsuTUI	ATCGAT	1 cut(s)	929
BtgI	CCRYGG	1 cut(s)	164
BtsCI	GGATG	3 cut(s)	475, 586, 767
BtsIMutI	CAGTG	2 cut(s)	135, 1067
BveI	ACCTGC	1 cut(s)	130
Cac8I	GCNNGC	4 cut(s)	177, 251, 576, 840
CaiI	CAGNNNCTG	1 cut(s)	296
CciI	TCATGA	1 cut(s)	402
ClaI	ATCGAT	1 cut(s)	929
Csp6I	GTAC	2 cut(s)	235, 637
CviAII	CATG	4 cut(s)	165, 403, 433, 1021
CviQI	GTAC	2 cut(s)	235, 637
DdeI	CTNAG	1 cut(s)	1040
DpnI	GATC	8 cut(s)	147, 228, 401, 531, 818, 982, 1008, 1025
DpnII	GATC	8 cut(s)	145, 226, 399, 529, 816, 980, 1006, 1023
EaeI	YGGCCR	1 cut(s)	934
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Ecl136II	GAGCTC	1 cut(s)	1017
Eco130I	CCWWGG	1 cut(s)	164
Eco147I	AGGCCT	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	1019
Eco53kI	GAGCTC	1 cut(s)	1017
Eco88I	CYCGRG	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	1017
EcoT14I	CCWWGG	1 cut(s)	164
EcoT38I	GRGCYC	1 cut(s)	1019
ErhI	CCWWGG	1 cut(s)	164
FaeI	CATG	4 cut(s)	168, 406, 436, 1024
FaqI	GGGAC	1 cut(s)	953
FatI	CATG	4 cut(s)	164, 402, 432, 1020
FbaI	TGATCA	1 cut(s)	816
FblI	GTMKAC	1 cut(s)	969
Fnu4HI	GCNGC	5 cut(s)	173, 264, 511, 788, 843
FokI	GGATG	3 cut(s)	482, 593, 754
FriOI	GRGCYC	1 cut(s)	1019
Fsp4HI	GCNGC	5 cut(s)	173, 264, 511, 788, 843
FspBI	CTAG	3 cut(s)	546, 557, 609
GluI	GCNGC	5 cut(s)	173, 264, 511, 788, 843
GsaI	CCCAGC	1 cut(s)	48
HaeIII	GGCC	2 cut(s)	253, 936
HapII	CCGG	1 cut(s)	937
Hin1II	CATG	4 cut(s)	168, 406, 436, 1024
HindIII	AAGCTT	1 cut(s)	712
HinfI	GANTC	1 cut(s)	764
HpaII	CCGG	1 cut(s)	937
HphI	GGTGA	3 cut(s)	50, 208, 352
Hpy166II	GTNNAC	3 cut(s)	85, 116, 970
Hpy188I	TCNGA	6 cut(s)	25, 53, 67, 194, 231, 626
Hpy188III	TCNNGA	7 cut(s)	388, 403, 755, 829, 911, 978, 1034
Hpy8I	GTNNAC	3 cut(s)	85, 116, 970
HpyAV	CCTTC	4 cut(s)	199, 277, 340, 842
HpyCH4III	ACNGT	2 cut(s)	539, 944
HpyCH4V	TGCA	6 cut(s)	125, 504, 744, 842, 1004, 1065
HpyF10VI	GCNNNNNNNGC	3 cut(s)	510, 516, 1062
HpyF3I	CTNAG	1 cut(s)	1040
Hsp92II	CATG	4 cut(s)	168, 406, 436, 1024
Ksp22I	TGATCA	1 cut(s)	816
Kzo9I	GATC	8 cut(s)	145, 226, 399, 529, 816, 980, 1006, 1023
LmnI	GCTCC	5 cut(s)	169, 246, 516, 1014, 1022
Lsp1109I	GCAGC	5 cut(s)	159, 275, 522, 799, 854
LweI	GCATC	1 cut(s)	621
MaeI	CTAG	3 cut(s)	546, 557, 609
MaeIII	GTNAC	3 cut(s)	103, 275, 874
MalI	GATC	8 cut(s)	147, 228, 401, 531, 818, 982, 1008, 1025
MboI	GATC	8 cut(s)	145, 226, 399, 529, 816, 980, 1006, 1023
MboII	GAAGA	7 cut(s)	83, 209, 212, 355, 432, 539, 792
MflI	RGATCY	1 cut(s)	145
MhlI	GDGCHC	1 cut(s)	1019
MluCI	AATT	6 cut(s)	140, 750, 955, 994, 1046, 1050
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	8 cut(s)	31, 196, 384, 456, 552, 682, 882, 907
MseI	TTAA	1 cut(s)	1049
MslI	CAYNNNNRTG	3 cut(s)	338, 431, 617
MspA1I	CMGCKG	2 cut(s)	266, 986
MspI	CCGG	1 cut(s)	937
MspR9I	CCNGG	1 cut(s)	938
MwoI	GCNNNNNNNGC	3 cut(s)	510, 516, 1062
NciI	CCSGG	1 cut(s)	938
NcoI	CCATGG	1 cut(s)	164
NdeII	GATC	8 cut(s)	145, 226, 399, 529, 816, 980, 1006, 1023
NlaIII	CATG	4 cut(s)	168, 406, 436, 1024
NlaIV	GGNNCC	1 cut(s)	562
NmuCI	GTSAC	1 cut(s)	103
PagI	TCATGA	1 cut(s)	402
PceI	AGGCCT	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	764
PkrI	GCNGC	5 cut(s)	174, 265, 512, 789, 844
PshBI	ATTAAT	1 cut(s)	1049
Psp124BI	GAGCTC	1 cut(s)	1019
PspFI	CCCAGC	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	562
PstI	CTGCAG	1 cut(s)	844
PstNI	CAGNNNCTG	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	145
PvuII	CAGCTG	2 cut(s)	266, 986
RsaI	GTAC	2 cut(s)	236, 638
RsaNI	GTAC	2 cut(s)	235, 637
RseI	CAYNNNNRTG	3 cut(s)	338, 431, 617
SacI	GAGCTC	1 cut(s)	1019
SaqAI	TTAA	1 cut(s)	1049
SatI	GCNGC	5 cut(s)	173, 264, 511, 788, 843
Sau3AI	GATC	8 cut(s)	145, 226, 399, 529, 816, 980, 1006, 1023
ScrFI	CCNGG	1 cut(s)	938
SduI	GDGCHC	1 cut(s)	1019
SfaNI	GCATC	1 cut(s)	621
SfcI	CTRYAG	2 cut(s)	288, 840
SmiMI	CAYNNNNRTG	3 cut(s)	338, 431, 617
Sse9I	AATT	6 cut(s)	140, 750, 955, 994, 1046, 1050
SseBI	AGGCCT	1 cut(s)	253
SsiI	CCGC	1 cut(s)	578
SspMI	CTAG	3 cut(s)	546, 557, 609
SstI	GAGCTC	1 cut(s)	1019
StuI	AGGCCT	1 cut(s)	253
StyD4I	CCNGG	1 cut(s)	936
StyI	CCWWGG	1 cut(s)	164
TaaI	ACNGT	2 cut(s)	539, 944
TaqI	TCGA	3 cut(s)	493, 615, 929
TasI	AATT	6 cut(s)	140, 750, 955, 994, 1046, 1050
TatI	WGTACW	1 cut(s)	636
TfiI	GAWTC	1 cut(s)	764
Tru1I	TTAA	1 cut(s)	1049
Tru9I	TTAA	1 cut(s)	1049
TscAI	CASTG	2 cut(s)	142, 1067
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	5 cut(s)	172, 263, 510, 787, 842
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	4 cut(s)	84, 419, 756, 968
TspRI	CASTG	2 cut(s)	142, 1067
VspI	ATTAAT	1 cut(s)	1049
XapI	RAATTY	1 cut(s)	955
XmiI	GTMKAC	1 cut(s)	969
XspI	CTAG	3 cut(s)	546, 557, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.