FvH4_6g15680

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
9783246 .. 9786574
3329 bp
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UTR
Exon/CDS
Intron
FvH4_6g15680.t2

Sequence Viewer

Length: 1395 bp
ATGATGTCCGGTGATGGCTATTCACTTATGCCTTCTGCCATTGAAGGGTTCGATCATCAACTGAACCCAGCAAACCCTAGTCAGAATCAGAAATCCAATCCTGCTGTCAAGAAGAAGAGGAATCTACCAGGAACTCCAGATCCAGATGCGGAGGTTATTGCCTTATCTCCCACCACACTTATGGCAACGAACAGATTCATCTGCGAGATATGCAACAAGGGTTTCCAAAGGGACCAGAACTTACAGCTTCATCGAAGAGGTCACAATCTTCCATGGAAACTGAGGCAAAGAACGAACAAGGATGTGATCAAGAAGAAGGTCTACATTTGCCCGGAGAAGACCTGCGTCCACCACGATCCTTCTAGAGCTCTCGGGGACCTCACCGGAATCAAGAAGCATTTCAGCAGGAAACACGGCGAGAAGAAGTGGAAGTGCGAGAAGTGTTCGAAGAAATACGCAGTTCAATCGGATTGGAAAGCTCACTCCAAGACGTGCGGGACTAGGGAGTACAAGTGTGACTGTGGAACTCTATTTTCCAGGAAAGATAGCTTCATCACACATCGAGCATTTTGTGATGCCCTAACTGAAGAGAGTGCTAGGCTCACTTCAGCTGCAGCAGCTGCTACAAATCTTAACTTCGGAAATGATCCTTCAGCAAACAACACCATGATGAATTCTCAAGCAGTTCAAGATGTTTCTCAAATCTCTGATTTCGAGAAGCCAAGCAGATTGTCGTTTTGGATGAACCAGCAGCCGAATAATCTCAATGTGATCGACATGGCAGCAGCAAATTCTAATAATCTTTATGATATGGTGCAAATGGGATCTGCCACTAGTCTTTTCGGGTCAAATTCCATGTCCAATTTCGGCGCCTCTACTTCAATAAGTTCGGCGAATCTCTCCTTATCATCACCAATGGGACTAAAAGATCAAGAAGGAAGAAATATCAAACCCAACATTATCAGCAAGCCACCGTCAGCGCCCATGTCAGCCACAGCGCTGCTGCAGAAAGCGGCGCAGTTAGGGTCTACTCGAAGCAGCAACCAGTCGCTTCCCGGCAGCAGCGCAGGCGTAATGACCTCGCCGCCTTCCTCGAACACATTGAACTTCAACAGAGGGTCGAATGAGCTTAACCAACTTTTTCAACCGAGGAATACTACTTCATCCAATCTGGTTAGCTCGTTAAGTTGTGCATCGAACAATTCTAGTCTCGAACAGCTAATGAAGTTCGGTGGCGCGAGTTCGAATGCGATTGATCGTCAGAATAGTCTAACCAGAGACTTCTTGGGCGTGGGAGGAGATAATCAAGCTCATAATAGGCAGTTCTTGCCACATGATCTAGCCAAGTTCGGCTCAGCTGCTATGGGATTGAGTCCATTCACTGGCAACCACTGA

Protein Analysis

465

Amino Acids

50.52

Weight (kDa)

9.45

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2H2-2nd_BIRD-IDD PF22996 44 - 78 6.4e-22 BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD PF22995 82 - 106 9.8e-15 BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD PF22992 109 - 147 2e-23 BIRD-IDD transcription factor, fourth C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 350
AccB1I GGYRCC 1 cut(s) 869
AccB7I CCANNNNNTGG 1 cut(s) 1382
AccI GTMKAC 2 cut(s) 321, 1028
AccII CGCG 1 cut(s) 1238
AciI CCGC 4 cut(s) 149, 495, 1013, 1085
AclWI GGATC 4 cut(s) 134, 350, 641, 832
AcsI RAATTY 3 cut(s) 673, 790, 850
AcuI CTGAAG 3 cut(s) 591, 606, 636
AcyI GRCGYC 1 cut(s) 870
AfaI GTAC 1 cut(s) 509
AfeI AGCGCT 1 cut(s) 999
AfiI CCNNNNNNNGG 2 cut(s) 45, 1382
AgsI TTSAA 7 cut(s) 44, 464, 689, 882, 1105, 1111, 1145
AhlI ACTAGT 1 cut(s) 833
AjiI CACGTC 1 cut(s) 492
AjnI CCWGG 2 cut(s) 127, 536
AloI GAACNNNNNNTCC 2 cut(s) 124, 156
Alw21I GWGCWC 1 cut(s) 370
Alw26I GTCTC 2 cut(s) 1214, 1272
AlwI GGATC 4 cut(s) 134, 350, 641, 832
AlwNI CAGNNNCTG 1 cut(s) 620
Ama87I CYCGRG 1 cut(s) 371
Aor51HI AGCGCT 1 cut(s) 999
ApoI RAATTY 3 cut(s) 673, 790, 850
ArsI GACNNNNNNTTYG 2 cut(s) 842, 874
Asp700I GAANNNNTTC 2 cut(s) 194, 398
AspLEI GCGC 6 cut(s) 872, 982, 1000, 1018, 1067, 1238
AspS9I GGNCC 2 cut(s) 232, 376
AsuC2I CCSGG 2 cut(s) 332, 1056
AsuHPI GGTGA 3 cut(s) 23, 373, 903
AsuII TTCGAA 2 cut(s) 446, 1244
AvaI CYCGRG 1 cut(s) 371
AvaII GGWCC 2 cut(s) 232, 376
BanI GGYRCC 1 cut(s) 869
BanII GRGCYC 1 cut(s) 370
BarI GAAGNNNNNNTAC 2 cut(s) 305, 337
BbsI GAAGAC 1 cut(s) 344
Bbv12I GWGCWC 1 cut(s) 370
BccI CCATC 1 cut(s) 8
BceAI ACGGC 1 cut(s) 430
BcgI CGANNNNNNTGC 2 cut(s) 447, 481
BciT130I CCWGG 2 cut(s) 129, 538
BclI TGATCA 1 cut(s) 306
BcnI CCSGG 2 cut(s) 332, 1056
BcoDI GTCTC 2 cut(s) 1214, 1272
BcuI ACTAGT 1 cut(s) 833
BfaI CTAG 7 cut(s) 78, 363, 501, 597, 834, 1206, 1340
BfmI CTRYAG 2 cut(s) 612, 1004
BfoI RGCGCY 3 cut(s) 873, 983, 1001
BfuAI ACCTGC 1 cut(s) 350
BlpI GCTNAGC 1 cut(s) 1354
Bme1390I CCNGG 4 cut(s) 129, 332, 538, 1056
Bme18I GGWCC 2 cut(s) 232, 376
BmeT110I CYCGRG 1 cut(s) 371
BmgBI CACGTC 1 cut(s) 492
BmgT120I GGNCC 2 cut(s) 232, 376
BmiI GGNNCC 3 cut(s) 233, 377, 871
BmrFI CCNGG 4 cut(s) 129, 332, 538, 1056
BmsI GCATC 3 cut(s) 136, 565, 1202
BoxI GACNNNNGTC 1 cut(s) 344
BpiI GAAGAC 1 cut(s) 344
BpmI CTGGAG 1 cut(s) 120
Bpu1102I GCTNAGC 1 cut(s) 1354
Bpu14I TTCGAA 2 cut(s) 446, 1244
BpuEI CTTGAG 1 cut(s) 663
BpuMI CCSGG 2 cut(s) 332, 1056
BsaHI GRCGYC 1 cut(s) 870
BsaJI CCNNGG 2 cut(s) 272, 1148
BsaWI WCCGGW 2 cut(s) 8, 383
BsaXI ACNNNNNCTCC 2 cut(s) 497, 527
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 1382
Bse1I ACTGG 2 cut(s) 1045, 1387
BseBI CCWGG 2 cut(s) 129, 538
BseDI CCNNGG 2 cut(s) 272, 1148
BseGI GGATG 3 cut(s) 307, 747, 1163
BseLI CCNNNNNNNGG 2 cut(s) 45, 1382
BseMII CTCAG 2 cut(s) 272, 1368
BseNI ACTGG 2 cut(s) 1045, 1387
BseRI GAGGAG 1 cut(s) 1311
BseYI CCCAGC 1 cut(s) 67
Bsh1236I CGCG 1 cut(s) 1238
BshNI GGYRCC 1 cut(s) 869
BsiHKAI GWGCWC 1 cut(s) 370
BsiHKCI CYCGRG 1 cut(s) 371
BsiSI CCGG 4 cut(s) 9, 332, 384, 1056
BslFI GGGAC 4 cut(s) 245, 389, 511, 933
BslI CCNNNNNNNGG 2 cut(s) 45, 1382
BsmAI GTCTC 2 cut(s) 1214, 1272
BsmFI GGGAC 4 cut(s) 245, 389, 511, 933
BsmI GAATGC 1 cut(s) 1252
BsoBI CYCGRG 1 cut(s) 371
Bsp119I TTCGAA 2 cut(s) 446, 1244
Bsp1286I GDGCHC 1 cut(s) 370
Bsp1720I GCTNAGC 1 cut(s) 1354
Bsp19I CCATGG 1 cut(s) 272
BspACI CCGC 4 cut(s) 149, 495, 1013, 1085
BspCNI CTCAG 2 cut(s) 273, 1367
BspFNI CGCG 1 cut(s) 1238
BspLI GGNNCC 3 cut(s) 233, 377, 871
BspMAI CTGCAG 2 cut(s) 616, 1008
BspMI ACCTGC 1 cut(s) 350
BspPI GGATC 4 cut(s) 134, 350, 641, 832
BspT104I TTCGAA 2 cut(s) 446, 1244
BspT107I GGYRCC 1 cut(s) 869
BsrI ACTGG 2 cut(s) 1045, 1387
BssECI CCNNGG 2 cut(s) 272, 1148
BssNI GRCGYC 1 cut(s) 870
BssT1I CCWWGG 1 cut(s) 272
Bst2UI CCWGG 2 cut(s) 129, 538
Bst4CI ACNGT 2 cut(s) 521, 975
Bst6I CTCTTC 3 cut(s) 110, 250, 582
BstACI GRCGYC 1 cut(s) 870
BstAPI GCANNNNNTGC 2 cut(s) 620, 1327
BstBI TTCGAA 2 cut(s) 446, 1244
BstC8I GCNNGC 2 cut(s) 968, 1069
BstDEI CTNAG 2 cut(s) 281, 1354
BstDSI CCRYGG 1 cut(s) 272
BstF5I GGATG 3 cut(s) 307, 747, 1163
BstFNI CGCG 1 cut(s) 1238
BstH2I RGCGCY 3 cut(s) 873, 983, 1001
BstHHI GCGC 6 cut(s) 872, 982, 1000, 1018, 1067, 1238
BstMAI GTCTC 2 cut(s) 1214, 1272
BstMWI GCNNNNNNNGC 5 cut(s) 210, 617, 620, 1068, 1327
BstNI CCWGG 2 cut(s) 129, 538
BstPAI GACNNNNGTC 1 cut(s) 344
BstSCI CCNGG 4 cut(s) 127, 330, 536, 1054
BstSFI CTRYAG 2 cut(s) 612, 1004
BstUI CGCG 1 cut(s) 1238
BstV2I GAAGAC 1 cut(s) 344
BstX2I RGATCY 2 cut(s) 139, 824
BstXI CCANNNNNNTGG 1 cut(s) 181
BstYI RGATCY 2 cut(s) 139, 824
BtgI CCRYGG 1 cut(s) 272
BtrI CACGTC 1 cut(s) 492
BtsCI GGATG 3 cut(s) 307, 747, 1163
BtsIMutI CAGTG 2 cut(s) 1380, 1390
BveI ACCTGC 1 cut(s) 350
Cac8I GCNNGC 2 cut(s) 968, 1069
CaiI CAGNNNCTG 1 cut(s) 620
CfoI GCGC 6 cut(s) 872, 982, 1000, 1018, 1067, 1238
Cfr13I GGNCC 2 cut(s) 232, 376
CseI GACGC 1 cut(s) 334
Csp6I GTAC 1 cut(s) 508
CviAII CATG 6 cut(s) 273, 667, 778, 856, 985, 1334
CviQI GTAC 1 cut(s) 508
DdeI CTNAG 2 cut(s) 281, 1354
DinI GGCGCC 1 cut(s) 871
Eam1104I CTCTTC 3 cut(s) 110, 250, 582
EarI CTCTTC 3 cut(s) 110, 250, 582
Ecl136II GAGCTC 1 cut(s) 368
Eco130I CCWWGG 1 cut(s) 272
Eco24I GRGCYC 1 cut(s) 370
Eco47I GGWCC 2 cut(s) 232, 376
Eco47III AGCGCT 1 cut(s) 999
Eco53kI GAGCTC 1 cut(s) 368
Eco57I CTGAAG 3 cut(s) 591, 606, 636
Eco88I CYCGRG 1 cut(s) 371
EcoICRI GAGCTC 1 cut(s) 368
EcoO109I RGGNCCY 1 cut(s) 376
EcoRI GAATTC 1 cut(s) 673
EcoRII CCWGG 2 cut(s) 127, 536
EcoT14I CCWWGG 1 cut(s) 272
EcoT38I GRGCYC 1 cut(s) 370
EgeI GGCGCC 1 cut(s) 871
EheI GGCGCC 1 cut(s) 871
ErhI CCWWGG 1 cut(s) 272
FaeI CATG 6 cut(s) 276, 670, 781, 859, 988, 1337
FaqI GGGAC 4 cut(s) 245, 389, 511, 933
FatI CATG 6 cut(s) 272, 666, 777, 855, 984, 1333
FauI CCCGC 1 cut(s) 488
FbaI TGATCA 1 cut(s) 306
FblI GTMKAC 2 cut(s) 321, 1028
FokI GGATG 3 cut(s) 314, 754, 1150
FriOI GRGCYC 1 cut(s) 370
FspBI CTAG 7 cut(s) 78, 363, 501, 597, 834, 1206, 1340
GlaI GCGC 6 cut(s) 871, 981, 999, 1017, 1066, 1237
GsaI CCCAGC 1 cut(s) 71
GsuI CTGGAG 1 cut(s) 120
HaeII RGCGCY 3 cut(s) 873, 983, 1001
HapII CCGG 4 cut(s) 9, 332, 384, 1056
HgaI GACGC 1 cut(s) 334
HhaI GCGC 6 cut(s) 872, 982, 1000, 1018, 1067, 1238
Hin1I GRCGYC 1 cut(s) 870
Hin1II CATG 6 cut(s) 276, 670, 781, 859, 988, 1337
Hin6I GCGC 6 cut(s) 870, 980, 998, 1016, 1065, 1236
HinP1I GCGC 6 cut(s) 870, 980, 998, 1016, 1065, 1236
HinfI GANTC 6 cut(s) 85, 121, 195, 387, 895, 1372
HpaII CCGG 4 cut(s) 9, 332, 384, 1056
HphI GGTGA 3 cut(s) 23, 373, 903
Hpy166II GTNNAC 3 cut(s) 322, 349, 1029
Hpy188I TCNGA 6 cut(s) 84, 90, 469, 641, 709, 1263
Hpy8I GTNNAC 3 cut(s) 322, 349, 1029
HpyAV CCTTC 7 cut(s) 38, 42, 310, 369, 660, 929, 1098
HpyCH4III ACNGT 2 cut(s) 521, 975
HpyCH4IV ACGT 1 cut(s) 491
HpyCH4V TGCA 5 cut(s) 213, 614, 817, 1006, 1193
HpyF10VI GCNNNNNNNGC 5 cut(s) 210, 617, 620, 1068, 1327
HpyF3I CTNAG 2 cut(s) 281, 1354
HpySE526I ACGT 1 cut(s) 491
Hsp92I GRCGYC 1 cut(s) 870
Hsp92II CATG 6 cut(s) 276, 670, 781, 859, 988, 1337
HspAI GCGC 6 cut(s) 870, 980, 998, 1016, 1065, 1236
KasI GGCGCC 1 cut(s) 869
Ksp22I TGATCA 1 cut(s) 306
LweI GCATC 3 cut(s) 136, 565, 1202
MaeI CTAG 7 cut(s) 78, 363, 501, 597, 834, 1206, 1340
MaeII ACGT 1 cut(s) 491
MaeIII GTNAC 2 cut(s) 260, 515
MflI RGATCY 2 cut(s) 139, 824
MhlI GDGCHC 1 cut(s) 370
MluCI AATT 5 cut(s) 673, 790, 850, 862, 1201
Mly113I GGCGCC 1 cut(s) 870
MlyI GAGTC 1 cut(s) 1381
MroXI GAANNNNTTC 2 cut(s) 194, 398
MseI TTAA 3 cut(s) 633, 1131, 1184
MslI CAYNNNNRTG 2 cut(s) 179, 668
MspA1I CMGCKG 3 cut(s) 611, 620, 1358
MspI CCGG 4 cut(s) 9, 332, 384, 1056
MspR9I CCNGG 4 cut(s) 129, 332, 538, 1056
Mva1269I GAATGC 1 cut(s) 1252
MvaI CCWGG 2 cut(s) 129, 538
MvnI CGCG 1 cut(s) 1238
MwoI GCNNNNNNNGC 5 cut(s) 210, 617, 620, 1068, 1327
NarI GGCGCC 1 cut(s) 870
NciI CCSGG 2 cut(s) 332, 1056
NcoI CCATGG 1 cut(s) 272
NlaIII CATG 6 cut(s) 276, 670, 781, 859, 988, 1337
NlaIV GGNNCC 3 cut(s) 233, 377, 871
NmuCI GTSAC 2 cut(s) 260, 515
NspV TTCGAA 2 cut(s) 446, 1244
PctI GAATGC 1 cut(s) 1252
PdmI GAANNNNTTC 2 cut(s) 194, 398
PfeI GAWTC 5 cut(s) 85, 121, 195, 387, 895
PflMI CCANNNNNTGG 1 cut(s) 1382
PfoI TCCNGGA 1 cut(s) 536
PleI GAGTC 1 cut(s) 1380
PluTI GGCGCC 1 cut(s) 873
PpsI GAGTC 1 cut(s) 1380
PpuMI RGGWCCY 1 cut(s) 376
PshAI GACNNNNGTC 1 cut(s) 344
Psp124BI GAGCTC 1 cut(s) 370
Psp5II RGGWCCY 1 cut(s) 376
Psp6I CCWGG 2 cut(s) 127, 536
PspFI CCCAGC 1 cut(s) 67
PspGI CCWGG 2 cut(s) 127, 536
PspN4I GGNNCC 3 cut(s) 233, 377, 871
PspPI GGNCC 2 cut(s) 232, 376
PspPPI RGGWCCY 1 cut(s) 376
PstI CTGCAG 2 cut(s) 616, 1008
PstNI CAGNNNCTG 1 cut(s) 620
PsuI RGATCY 2 cut(s) 139, 824
PvuII CAGCTG 3 cut(s) 611, 620, 1358
RsaI GTAC 1 cut(s) 509
RsaNI GTAC 1 cut(s) 508
RseI CAYNNNNRTG 2 cut(s) 179, 668
SacI GAGCTC 1 cut(s) 370
SaqAI TTAA 3 cut(s) 633, 1131, 1184
Sau96I GGNCC 2 cut(s) 232, 376
SchI GAGTC 1 cut(s) 1381
ScrFI CCNGG 4 cut(s) 129, 332, 538, 1056
SduI GDGCHC 1 cut(s) 370
SfaNI GCATC 3 cut(s) 136, 565, 1202
SfcI CTRYAG 2 cut(s) 612, 1004
SfoI GGCGCC 1 cut(s) 871
SfuI TTCGAA 2 cut(s) 446, 1244
SinI GGWCC 2 cut(s) 232, 376
SmiMI CAYNNNNRTG 2 cut(s) 179, 668
SmlI CTYRAG 1 cut(s) 678
SmoI CTYRAG 1 cut(s) 678
SpeI ACTAGT 1 cut(s) 833
Sse9I AATT 5 cut(s) 673, 790, 850, 862, 1201
SsiI CCGC 4 cut(s) 149, 495, 1013, 1085
SspDI GGCGCC 1 cut(s) 869
SspMI CTAG 7 cut(s) 78, 363, 501, 597, 834, 1206, 1340
SstI GAGCTC 1 cut(s) 370
StyD4I CCNGG 4 cut(s) 127, 330, 536, 1054
StyI CCWWGG 1 cut(s) 272
TaaI ACNGT 2 cut(s) 521, 975
TaiI ACGT 1 cut(s) 494
TasI AATT 5 cut(s) 673, 790, 850, 862, 1201
TatI WGTACW 1 cut(s) 507
TauI GCSGC 2 cut(s) 1016, 1087
TfiI GAWTC 5 cut(s) 85, 121, 195, 387, 895
Tru1I TTAA 3 cut(s) 633, 1131, 1184
Tru9I TTAA 3 cut(s) 633, 1131, 1184
TscAI CASTG 1 cut(s) 1387
TseFI GTSAC 2 cut(s) 260, 515
Tsp45I GTSAC 2 cut(s) 260, 515
TspDTI ATGAA 7 cut(s) 187, 239, 541, 686, 758, 1152, 1238
TspRI CASTG 1 cut(s) 1387
Van91I CCANNNNNTGG 1 cut(s) 1382
VpaK11BI GGWCC 2 cut(s) 232, 376
XapI RAATTY 3 cut(s) 673, 790, 850
XbaI TCTAGA 1 cut(s) 362
XcmI CCANNNNNNNNNTGG 2 cut(s) 178, 1282
XmiI GTMKAC 2 cut(s) 321, 1028
XmnI GAANNNNTTC 2 cut(s) 194, 398
XspI CTAG 7 cut(s) 78, 363, 501, 597, 834, 1206, 1340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.