ZINC FINGER protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G03150 |
| fragaria_vesca | FvH4_6g15680 FvH4_6g15680 |
| malus_domestica | MD04G1100300.v1.1 MD12G1120300.v1.1 |
| prunus_persica | Prupe.6G238500_v2.0.a1 |
| pyrus_communis | pycom04g09530 pycom12g11920 pycom13g01050 pycom16g00930 |
| rosa_chinensis | RchiOBHm_Chr3g0469381 |
| rosa_laevigata | RLG00000024354 |
| rosa_multiflora | Rmu_sc0013330.1_g000003 Rmu_sc0013330.1_g000004 |
| rosa_roxburghii | Rroxscaffold_6G00411940 |
| rosa_rugosa | Rorug03G0101300 |
| rosa_samantha | Rh3AG150300 Rh3BG174000 Rh3CG165000 Rh3DG201400 |
| rosa_wichuraiana | Rw3G014170 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 953 |
| Acc36I | ACCTGC | 3 cut(s) | 341, 491, 1098 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1373 |
| AccI | GTMKAC | 1 cut(s) | 312 |
| AciI | CCGC | 6 cut(s) | 109, 486, 962, 981, 1004, 1040 |
| AclWI | GGATC | 4 cut(s) | 125, 341, 632, 823 |
| AcsI | RAATTY | 4 cut(s) | 841, 1211, 1225, 1290 |
| AcuI | CTGAAG | 2 cut(s) | 582, 597 |
| AfeI | AGCGCT | 1 cut(s) | 990 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 42, 1046, 1373 |
| AgsI | TTSAA | 5 cut(s) | 61, 680, 873, 1102, 1136 |
| AhlI | ACTAGT | 1 cut(s) | 824 |
| AjnI | CCWGG | 2 cut(s) | 118, 527 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 115, 147 |
| Alw21I | GWGCWC | 3 cut(s) | 361, 810, 1145 |
| Alw26I | GTCTC | 2 cut(s) | 1199, 1257 |
| Alw44I | GTGCAC | 1 cut(s) | 806 |
| AlwI | GGATC | 4 cut(s) | 125, 341, 632, 823 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 611 |
| Ama87I | CYCGRG | 1 cut(s) | 323 |
| Aor51HI | AGCGCT | 1 cut(s) | 990 |
| AoxI | GGCC | 1 cut(s) | 1005 |
| ApaLI | GTGCAC | 1 cut(s) | 806 |
| ApoI | RAATTY | 4 cut(s) | 841, 1211, 1225, 1290 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 833, 865 |
| AseI | ATTAAT | 1 cut(s) | 663 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 185, 389 |
| AspLEI | GCGC | 3 cut(s) | 973, 991, 1223 |
| AspS9I | GGNCC | 3 cut(s) | 223, 367, 1006 |
| AsuHPI | GGTGA | 2 cut(s) | 20, 894 |
| AsuII | TTCGAA | 2 cut(s) | 437, 1229 |
| AsuNHI | GCTAGC | 1 cut(s) | 1321 |
| AvaI | CYCGRG | 1 cut(s) | 323 |
| AvaII | GGWCC | 2 cut(s) | 223, 367 |
| BaeGI | GKGCMC | 1 cut(s) | 810 |
| BanII | GRGCYC | 2 cut(s) | 361, 1019 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 296, 328 |
| BbsI | GAAGAC | 1 cut(s) | 335 |
| Bbv12I | GWGCWC | 3 cut(s) | 361, 810, 1145 |
| BccI | CCATC | 2 cut(s) | 5, 757 |
| BceAI | ACGGC | 1 cut(s) | 421 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 131, 165, 438, 472 |
| BciT130I | CCWGG | 2 cut(s) | 120, 529 |
| BclI | TGATCA | 2 cut(s) | 297, 1240 |
| BcoDI | GTCTC | 2 cut(s) | 1199, 1257 |
| BcuI | ACTAGT | 1 cut(s) | 824 |
| BfaI | CTAG | 6 cut(s) | 75, 492, 588, 825, 1260, 1322 |
| BfmI | CTRYAG | 3 cut(s) | 603, 642, 995 |
| BfoI | RGCGCY | 2 cut(s) | 974, 992 |
| BfuAI | ACCTGC | 3 cut(s) | 341, 491, 1098 |
| Bme1390I | CCNGG | 2 cut(s) | 120, 529 |
| Bme18I | GGWCC | 2 cut(s) | 223, 367 |
| BmeT110I | CYCGRG | 1 cut(s) | 323 |
| BmgT120I | GGNCC | 3 cut(s) | 223, 367, 1006 |
| BmiI | GGNNCC | 2 cut(s) | 224, 368 |
| BmrFI | CCNGG | 2 cut(s) | 120, 529 |
| BmrI | ACTGGG | 1 cut(s) | 1003 |
| BmsI | GCATC | 3 cut(s) | 127, 556, 872 |
| BmtI | GCTAGC | 1 cut(s) | 1325 |
| BmuI | ACTGGG | 1 cut(s) | 1003 |
| BoxI | GACNNNNGTC | 1 cut(s) | 335 |
| BpiI | GAAGAC | 1 cut(s) | 335 |
| Bpu10I | CCTNAGC | 1 cut(s) | 272 |
| Bpu14I | TTCGAA | 2 cut(s) | 437, 1229 |
| BpuEI | CTTGAG | 1 cut(s) | 654 |
| BsaJI | CCNNGG | 3 cut(s) | 36, 141, 263 |
| BsaWI | WCCGGW | 2 cut(s) | 5, 374 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 488, 518 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 42, 1046, 1373 |
| Bse1I | ACTGG | 2 cut(s) | 1009, 1378 |
| BseBI | CCWGG | 2 cut(s) | 120, 529 |
| BseDI | CCNNGG | 3 cut(s) | 36, 141, 263 |
| BseGI | GGATG | 1 cut(s) | 298 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 42, 1046, 1373 |
| BseNI | ACTGG | 2 cut(s) | 1009, 1378 |
| BseSI | GKGCMC | 1 cut(s) | 810 |
| BseYI | CCCAGC | 2 cut(s) | 64, 713 |
| BshFI | GGCC | 1 cut(s) | 1007 |
| BsiHKAI | GWGCWC | 3 cut(s) | 361, 810, 1145 |
| BsiHKCI | CYCGRG | 1 cut(s) | 323 |
| BsiSI | CCGG | 3 cut(s) | 6, 375, 397 |
| BslFI | GGGAC | 3 cut(s) | 236, 380, 502 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 42, 1046, 1373 |
| BsmAI | GTCTC | 2 cut(s) | 1199, 1257 |
| BsmFI | GGGAC | 3 cut(s) | 236, 380, 502 |
| BsmI | GAATGC | 1 cut(s) | 1237 |
| BsnI | GGCC | 1 cut(s) | 1007 |
| BsoBI | CYCGRG | 1 cut(s) | 323 |
| Bsp119I | TTCGAA | 2 cut(s) | 437, 1229 |
| Bsp1286I | GDGCHC | 4 cut(s) | 361, 810, 1019, 1145 |
| Bsp143I | GATC | 9 cut(s) | 49, 130, 297, 346, 637, 815, 919, 1240, 1282 |
| Bsp19I | CCATGG | 2 cut(s) | 36, 263 |
| BspACI | CCGC | 6 cut(s) | 109, 486, 962, 981, 1004, 1040 |
| BspANI | GGCC | 1 cut(s) | 1007 |
| BspLI | GGNNCC | 2 cut(s) | 224, 368 |
| BspMAI | CTGCAG | 2 cut(s) | 607, 999 |
| BspMI | ACCTGC | 3 cut(s) | 341, 491, 1098 |
| BspOI | GCTAGC | 1 cut(s) | 1325 |
| BspPI | GGATC | 4 cut(s) | 125, 341, 632, 823 |
| BspT104I | TTCGAA | 2 cut(s) | 437, 1229 |
| BsrI | ACTGG | 2 cut(s) | 1009, 1378 |
| BssECI | CCNNGG | 3 cut(s) | 36, 141, 263 |
| BssMI | GATC | 9 cut(s) | 49, 130, 297, 346, 637, 815, 919, 1240, 1282 |
| BssT1I | CCWWGG | 2 cut(s) | 36, 263 |
| Bst2UI | CCWGG | 2 cut(s) | 120, 529 |
| Bst4CI | ACNGT | 2 cut(s) | 512, 646 |
| Bst6I | CTCTTC | 2 cut(s) | 241, 573 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 611, 1309 |
| BstBI | TTCGAA | 2 cut(s) | 437, 1229 |
| BstC8I | GCNNGC | 3 cut(s) | 959, 966, 1323 |
| BstDEI | CTNAG | 1 cut(s) | 272 |
| BstDSI | CCRYGG | 2 cut(s) | 36, 263 |
| BstF5I | GGATG | 1 cut(s) | 298 |
| BstH2I | RGCGCY | 2 cut(s) | 974, 992 |
| BstHHI | GCGC | 3 cut(s) | 973, 991, 1223 |
| BstKTI | GATC | 9 cut(s) | 52, 133, 300, 349, 640, 818, 922, 1243, 1285 |
| BstMAI | GTCTC | 2 cut(s) | 1199, 1257 |
| BstMBI | GATC | 9 cut(s) | 49, 130, 297, 346, 637, 815, 919, 1240, 1282 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 201, 608, 611, 739, 970, 1104, 1309, 1318 |
| BstNI | CCWGG | 2 cut(s) | 120, 529 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 335 |
| BstSCI | CCNGG | 2 cut(s) | 118, 527 |
| BstSFI | CTRYAG | 3 cut(s) | 603, 642, 995 |
| BstSLI | GKGCMC | 1 cut(s) | 810 |
| BstV2I | GAAGAC | 1 cut(s) | 335 |
| BstX2I | RGATCY | 2 cut(s) | 130, 815 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 94, 172 |
| BstYI | RGATCY | 2 cut(s) | 130, 815 |
| BsuRI | GGCC | 1 cut(s) | 1007 |
| BtgI | CCRYGG | 2 cut(s) | 36, 263 |
| BtsCI | GGATG | 1 cut(s) | 298 |
| BtsIMutI | CAGTG | 2 cut(s) | 1371, 1381 |
| BveI | ACCTGC | 3 cut(s) | 341, 491, 1098 |
| Cac8I | GCNNGC | 3 cut(s) | 959, 966, 1323 |
| CaiI | CAGNNNCTG | 1 cut(s) | 611 |
| CfoI | GCGC | 3 cut(s) | 973, 991, 1223 |
| Cfr13I | GGNCC | 3 cut(s) | 223, 367, 1006 |
| CseI | GACGC | 1 cut(s) | 325 |
| CviAII | CATG | 7 cut(s) | 37, 264, 658, 769, 811, 976, 1316 |
| DdeI | CTNAG | 1 cut(s) | 272 |
| DpnI | GATC | 9 cut(s) | 51, 132, 299, 348, 639, 817, 921, 1242, 1284 |
| DpnII | GATC | 9 cut(s) | 49, 130, 297, 346, 637, 815, 919, 1240, 1282 |
| Eam1104I | CTCTTC | 2 cut(s) | 241, 573 |
| EarI | CTCTTC | 2 cut(s) | 241, 573 |
| EciI | GGCGGA | 1 cut(s) | 970 |
| Ecl136II | GAGCTC | 1 cut(s) | 359 |
| Eco130I | CCWWGG | 2 cut(s) | 36, 263 |
| Eco24I | GRGCYC | 2 cut(s) | 361, 1019 |
| Eco47I | GGWCC | 2 cut(s) | 223, 367 |
| Eco47III | AGCGCT | 1 cut(s) | 990 |
| Eco53kI | GAGCTC | 1 cut(s) | 359 |
| Eco57I | CTGAAG | 2 cut(s) | 582, 597 |
| Eco88I | CYCGRG | 1 cut(s) | 323 |
| EcoICRI | GAGCTC | 1 cut(s) | 359 |
| EcoO109I | RGGNCCY | 1 cut(s) | 367 |
| EcoRII | CCWGG | 2 cut(s) | 118, 527 |
| EcoT14I | CCWWGG | 2 cut(s) | 36, 263 |
| EcoT38I | GRGCYC | 2 cut(s) | 361, 1019 |
| ErhI | CCWWGG | 2 cut(s) | 36, 263 |
| FaeI | CATG | 7 cut(s) | 40, 267, 661, 772, 814, 979, 1319 |
| FaqI | GGGAC | 3 cut(s) | 236, 380, 502 |
| FatI | CATG | 7 cut(s) | 36, 263, 657, 768, 810, 975, 1315 |
| FauI | CCCGC | 1 cut(s) | 479 |
| FbaI | TGATCA | 2 cut(s) | 297, 1240 |
| FblI | GTMKAC | 1 cut(s) | 312 |
| FokI | GGATG | 1 cut(s) | 305 |
| FriOI | GRGCYC | 2 cut(s) | 361, 1019 |
| FspBI | CTAG | 6 cut(s) | 75, 492, 588, 825, 1260, 1322 |
| GlaI | GCGC | 3 cut(s) | 972, 990, 1222 |
| GsaI | CCCAGC | 2 cut(s) | 68, 717 |
| HaeII | RGCGCY | 2 cut(s) | 974, 992 |
| HaeIII | GGCC | 1 cut(s) | 1007 |
| HapII | CCGG | 3 cut(s) | 6, 375, 397 |
| HgaI | GACGC | 1 cut(s) | 325 |
| HhaI | GCGC | 3 cut(s) | 973, 991, 1223 |
| Hin1II | CATG | 7 cut(s) | 40, 267, 661, 772, 814, 979, 1319 |
| Hin6I | GCGC | 3 cut(s) | 971, 989, 1221 |
| HinP1I | GCGC | 3 cut(s) | 971, 989, 1221 |
| HindIII | AAGCTT | 1 cut(s) | 269 |
| HinfI | GANTC | 7 cut(s) | 112, 186, 378, 736, 886, 1159, 1363 |
| HpaII | CCGG | 3 cut(s) | 6, 375, 397 |
| HphI | GGTGA | 2 cut(s) | 20, 894 |
| Hpy166II | GTNNAC | 4 cut(s) | 313, 340, 649, 808 |
| Hpy188I | TCNGA | 4 cut(s) | 460, 632, 700, 1248 |
| Hpy188III | TCNNGA | 8 cut(s) | 100, 134, 301, 354, 382, 680, 923, 1196 |
| Hpy8I | GTNNAC | 4 cut(s) | 313, 340, 649, 808 |
| HpyAV | CCTTC | 5 cut(s) | 35, 39, 301, 360, 1086 |
| HpyCH4III | ACNGT | 2 cut(s) | 512, 646 |
| HpyCH4V | TGCA | 6 cut(s) | 204, 605, 779, 808, 863, 997 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 201, 608, 611, 739, 970, 1104, 1309, 1318 |
| HpyF3I | CTNAG | 1 cut(s) | 272 |
| Hsp92II | CATG | 7 cut(s) | 40, 267, 661, 772, 814, 979, 1319 |
| HspAI | GCGC | 3 cut(s) | 971, 989, 1221 |
| Ksp22I | TGATCA | 2 cut(s) | 297, 1240 |
| Kzo9I | GATC | 9 cut(s) | 49, 130, 297, 346, 637, 815, 919, 1240, 1282 |
| LweI | GCATC | 3 cut(s) | 127, 556, 872 |
| MaeI | CTAG | 6 cut(s) | 75, 492, 588, 825, 1260, 1322 |
| MaeIII | GTNAC | 1 cut(s) | 251 |
| MalI | GATC | 9 cut(s) | 51, 132, 299, 348, 639, 817, 921, 1242, 1284 |
| MboI | GATC | 9 cut(s) | 49, 130, 297, 346, 637, 815, 919, 1240, 1282 |
| MboII | GAAGA | 9 cut(s) | 115, 251, 258, 316, 340, 424, 451, 590, 1071 |
| MfeI | CAATTG | 1 cut(s) | 56 |
| MflI | RGATCY | 2 cut(s) | 130, 815 |
| MhlI | GDGCHC | 4 cut(s) | 361, 810, 1019, 1145 |
| MluCI | AATT | 7 cut(s) | 56, 664, 841, 853, 1211, 1225, 1290 |
| MlyI | GAGTC | 1 cut(s) | 1372 |
| MnlI | CCTC | 4 cut(s) | 136, 242, 1081, 1093 |
| MroXI | GAANNNNTTC | 2 cut(s) | 185, 389 |
| MseI | TTAA | 4 cut(s) | 663, 939, 1122, 1175 |
| MslI | CAYNNNNRTG | 1 cut(s) | 170 |
| MspA1I | CMGCKG | 4 cut(s) | 602, 611, 776, 1349 |
| MspI | CCGG | 3 cut(s) | 6, 375, 397 |
| MspR9I | CCNGG | 2 cut(s) | 120, 529 |
| MunI | CAATTG | 1 cut(s) | 56 |
| Mva1269I | GAATGC | 1 cut(s) | 1237 |
| MvaI | CCWGG | 2 cut(s) | 120, 529 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 201, 608, 611, 739, 970, 1104, 1309, 1318 |
| NcoI | CCATGG | 2 cut(s) | 36, 263 |
| NdeII | GATC | 9 cut(s) | 49, 130, 297, 346, 637, 815, 919, 1240, 1282 |
| NheI | GCTAGC | 1 cut(s) | 1321 |
| NlaIII | CATG | 7 cut(s) | 40, 267, 661, 772, 814, 979, 1319 |
| NlaIV | GGNNCC | 2 cut(s) | 224, 368 |
| NmeAIII | GCCGAG | 1 cut(s) | 166 |
| NmuCI | GTSAC | 1 cut(s) | 251 |
| NspV | TTCGAA | 2 cut(s) | 437, 1229 |
| PctI | GAATGC | 1 cut(s) | 1237 |
| PdmI | GAANNNNTTC | 2 cut(s) | 185, 389 |
| PfeI | GAWTC | 6 cut(s) | 112, 186, 378, 736, 886, 1159 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1373 |
| PfoI | TCCNGGA | 1 cut(s) | 527 |
| PleI | GAGTC | 1 cut(s) | 1371 |
| PpsI | GAGTC | 1 cut(s) | 1371 |
| PpuMI | RGGWCCY | 1 cut(s) | 367 |
| PshAI | GACNNNNGTC | 1 cut(s) | 335 |
| PshBI | ATTAAT | 1 cut(s) | 663 |
| PsiI | TTATAA | 1 cut(s) | 953 |
| Psp124BI | GAGCTC | 1 cut(s) | 361 |
| Psp5II | RGGWCCY | 1 cut(s) | 367 |
| Psp6I | CCWGG | 2 cut(s) | 118, 527 |
| PspFI | CCCAGC | 2 cut(s) | 64, 713 |
| PspGI | CCWGG | 2 cut(s) | 118, 527 |
| PspN4I | GGNNCC | 2 cut(s) | 224, 368 |
| PspPI | GGNCC | 3 cut(s) | 223, 367, 1006 |
| PspPPI | RGGWCCY | 1 cut(s) | 367 |
| PstI | CTGCAG | 2 cut(s) | 607, 999 |
| PstNI | CAGNNNCTG | 1 cut(s) | 611 |
| PsuI | RGATCY | 2 cut(s) | 130, 815 |
| PvuII | CAGCTG | 4 cut(s) | 602, 611, 776, 1349 |
| RseI | CAYNNNNRTG | 1 cut(s) | 170 |
| SacI | GAGCTC | 1 cut(s) | 361 |
| SaqAI | TTAA | 4 cut(s) | 663, 939, 1122, 1175 |
| Sau3AI | GATC | 9 cut(s) | 49, 130, 297, 346, 637, 815, 919, 1240, 1282 |
| Sau96I | GGNCC | 3 cut(s) | 223, 367, 1006 |
| SchI | GAGTC | 1 cut(s) | 1372 |
| ScrFI | CCNGG | 2 cut(s) | 120, 529 |
| SduI | GDGCHC | 4 cut(s) | 361, 810, 1019, 1145 |
| SfaNI | GCATC | 3 cut(s) | 127, 556, 872 |
| SfcI | CTRYAG | 3 cut(s) | 603, 642, 995 |
| SfuI | TTCGAA | 2 cut(s) | 437, 1229 |
| SinI | GGWCC | 2 cut(s) | 223, 367 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 170 |
| SmlI | CTYRAG | 1 cut(s) | 669 |
| SmoI | CTYRAG | 1 cut(s) | 669 |
| SpeI | ACTAGT | 1 cut(s) | 824 |
| Sse9I | AATT | 7 cut(s) | 56, 664, 841, 853, 1211, 1225, 1290 |
| SsiI | CCGC | 6 cut(s) | 109, 486, 962, 981, 1004, 1040 |
| SspI | AATATT | 1 cut(s) | 937 |
| SspMI | CTAG | 6 cut(s) | 75, 492, 588, 825, 1260, 1322 |
| SstI | GAGCTC | 1 cut(s) | 361 |
| StyD4I | CCNGG | 2 cut(s) | 118, 527 |
| StyI | CCWWGG | 2 cut(s) | 36, 263 |
| TaaI | ACNGT | 2 cut(s) | 512, 646 |
| TasI | AATT | 7 cut(s) | 56, 664, 841, 853, 1211, 1225, 1290 |
| TauI | GCSGC | 2 cut(s) | 964, 1007 |
| TfiI | GAWTC | 6 cut(s) | 112, 186, 378, 736, 886, 1159 |
| Tru1I | TTAA | 4 cut(s) | 663, 939, 1122, 1175 |
| Tru9I | TTAA | 4 cut(s) | 663, 939, 1122, 1175 |
| TscAI | CASTG | 1 cut(s) | 1378 |
| TseFI | GTSAC | 1 cut(s) | 251 |
| Tsp45I | GTSAC | 1 cut(s) | 251 |
| TspDTI | ATGAA | 8 cut(s) | 178, 230, 532, 813, 1143, 1173, 1223, 1283 |
| TspRI | CASTG | 1 cut(s) | 1378 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1373 |
| VneI | GTGCAC | 1 cut(s) | 806 |
| VpaK11BI | GGWCC | 2 cut(s) | 223, 367 |
| VspI | ATTAAT | 1 cut(s) | 663 |
| XapI | RAATTY | 4 cut(s) | 841, 1211, 1225, 1290 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 169 |
| XmiI | GTMKAC | 1 cut(s) | 312 |
| XmnI | GAANNNNTTC | 2 cut(s) | 185, 389 |
| XspI | CTAG | 6 cut(s) | 75, 492, 588, 825, 1260, 1322 |