Rmu_sc0013330.1_g000003

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013330.1
Physical Location & Seq
Reverse (-)
12852 .. 14529
1678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013330.1_g000003.1.cds

Sequence Viewer

Length: 1386 bp
atgtccggtgatggctattcacttataccttctgccatggaagggttcgatcatcaattgaacccagcaaaccctagccagaaatccaatcctgtggtcaagaagaagcggaatctaccaggaacgccagatccagatgccgaggttattgccttatctcccaccacacttatggcaacgaacagattcatctgcgagatatgcaacaagggtttccaaagggaccagaacttacagcttcatcgaagaggtcacaatcttccatggaagcttaggcaaagaacgaacaaggatgtgatcaagaagaaggtctacatttgccccgagaagacctgcgtccaccacgatccttcgagagctcttggggaccttaccggaatcaagaagcatttcagccggaaacacggcgagaagaagtggaagtgcgagaagtgttcgaagaaatacgcagtccaatcggattggaaagctcactccaagacctgcgggactagggagtataagtgcgactgtggaactctattttccaggaaagatagcttcatcacgcatagagcattttgtgatgccctaactgaagagagtgctaggctcacttcagctgcagcagctgctacaaatctcaacttcggaaatgatcctacagtaaacaacaccatgattaattctcaagctgttcaagatgtttctcaaatctctgatttcgacaagcccagcagattatcgttttggctgaatcagcagccaaacaatctcaatgtgatggacatggcagctgcaaatcctaataatctgtatgaaatggtgcacatgggatctgccactagtctatttggctcaaattctatgtccaatttcggtgcatctacttcaacaagttctgcgaatctctccttatcatcaccgataggactaaaagatcaagaacgcagaaatattaaagccaacattataagcaagccgccagcagcgcccatgtccgccacagcgctgctgcagaaagcggcccagttgggctctactcgaagcagcaaccaaccgctttcgggcagcagcgtaggtgtaatgacctcgccttcttcctcaaacacaatgagcttcaacagcaggtcaaatgagcttaaccaactttttcaatcgagcactactacttcatcgaatctggttggctcgttaagttgttcatcgaatagtctcgaacaggtaatgaaattcggtggcgcaaattcgaatgcgattgatcatcagaatagtctaactagagactttttgggcgtgggagatcgtcaaattcataataggcagttcttgccacatgagctagccaagtttggttcgatgagttcagctgctatgggattgagtccattcactggcaaccactga

Protein Analysis

461

Amino Acids

50.32

Weight (kDa)

9.45

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 953
Acc36I ACCTGC 3 cut(s) 341, 491, 1098
AccB7I CCANNNNNTGG 1 cut(s) 1373
AccI GTMKAC 1 cut(s) 312
AciI CCGC 6 cut(s) 109, 486, 962, 981, 1004, 1040
AclWI GGATC 4 cut(s) 125, 341, 632, 823
AcsI RAATTY 4 cut(s) 841, 1211, 1225, 1290
AcuI CTGAAG 2 cut(s) 582, 597
AfeI AGCGCT 1 cut(s) 990
AfiI CCNNNNNNNGG 3 cut(s) 42, 1046, 1373
AgsI TTSAA 5 cut(s) 61, 680, 873, 1102, 1136
AhlI ACTAGT 1 cut(s) 824
AjnI CCWGG 2 cut(s) 118, 527
AloI GAACNNNNNNTCC 2 cut(s) 115, 147
Alw21I GWGCWC 3 cut(s) 361, 810, 1145
Alw26I GTCTC 2 cut(s) 1199, 1257
Alw44I GTGCAC 1 cut(s) 806
AlwI GGATC 4 cut(s) 125, 341, 632, 823
AlwNI CAGNNNCTG 1 cut(s) 611
Ama87I CYCGRG 1 cut(s) 323
Aor51HI AGCGCT 1 cut(s) 990
AoxI GGCC 1 cut(s) 1005
ApaLI GTGCAC 1 cut(s) 806
ApoI RAATTY 4 cut(s) 841, 1211, 1225, 1290
ArsI GACNNNNNNTTYG 2 cut(s) 833, 865
AseI ATTAAT 1 cut(s) 663
Asp700I GAANNNNTTC 2 cut(s) 185, 389
AspLEI GCGC 3 cut(s) 973, 991, 1223
AspS9I GGNCC 3 cut(s) 223, 367, 1006
AsuHPI GGTGA 2 cut(s) 20, 894
AsuII TTCGAA 2 cut(s) 437, 1229
AsuNHI GCTAGC 1 cut(s) 1321
AvaI CYCGRG 1 cut(s) 323
AvaII GGWCC 2 cut(s) 223, 367
BaeGI GKGCMC 1 cut(s) 810
BanII GRGCYC 2 cut(s) 361, 1019
BarI GAAGNNNNNNTAC 2 cut(s) 296, 328
BbsI GAAGAC 1 cut(s) 335
Bbv12I GWGCWC 3 cut(s) 361, 810, 1145
BccI CCATC 2 cut(s) 5, 757
BceAI ACGGC 1 cut(s) 421
BcgI CGANNNNNNTGC 4 cut(s) 131, 165, 438, 472
BciT130I CCWGG 2 cut(s) 120, 529
BclI TGATCA 2 cut(s) 297, 1240
BcoDI GTCTC 2 cut(s) 1199, 1257
BcuI ACTAGT 1 cut(s) 824
BfaI CTAG 6 cut(s) 75, 492, 588, 825, 1260, 1322
BfmI CTRYAG 3 cut(s) 603, 642, 995
BfoI RGCGCY 2 cut(s) 974, 992
BfuAI ACCTGC 3 cut(s) 341, 491, 1098
Bme1390I CCNGG 2 cut(s) 120, 529
Bme18I GGWCC 2 cut(s) 223, 367
BmeT110I CYCGRG 1 cut(s) 323
BmgT120I GGNCC 3 cut(s) 223, 367, 1006
BmiI GGNNCC 2 cut(s) 224, 368
BmrFI CCNGG 2 cut(s) 120, 529
BmrI ACTGGG 1 cut(s) 1003
BmsI GCATC 3 cut(s) 127, 556, 872
BmtI GCTAGC 1 cut(s) 1325
BmuI ACTGGG 1 cut(s) 1003
BoxI GACNNNNGTC 1 cut(s) 335
BpiI GAAGAC 1 cut(s) 335
Bpu10I CCTNAGC 1 cut(s) 272
Bpu14I TTCGAA 2 cut(s) 437, 1229
BpuEI CTTGAG 1 cut(s) 654
BsaJI CCNNGG 3 cut(s) 36, 141, 263
BsaWI WCCGGW 2 cut(s) 5, 374
BsaXI ACNNNNNCTCC 2 cut(s) 488, 518
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 1046, 1373
Bse1I ACTGG 2 cut(s) 1009, 1378
BseBI CCWGG 2 cut(s) 120, 529
BseDI CCNNGG 3 cut(s) 36, 141, 263
BseGI GGATG 1 cut(s) 298
BseLI CCNNNNNNNGG 3 cut(s) 42, 1046, 1373
BseNI ACTGG 2 cut(s) 1009, 1378
BseSI GKGCMC 1 cut(s) 810
BseYI CCCAGC 2 cut(s) 64, 713
BshFI GGCC 1 cut(s) 1007
BsiHKAI GWGCWC 3 cut(s) 361, 810, 1145
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 3 cut(s) 6, 375, 397
BslFI GGGAC 3 cut(s) 236, 380, 502
BslI CCNNNNNNNGG 3 cut(s) 42, 1046, 1373
BsmAI GTCTC 2 cut(s) 1199, 1257
BsmFI GGGAC 3 cut(s) 236, 380, 502
BsmI GAATGC 1 cut(s) 1237
BsnI GGCC 1 cut(s) 1007
BsoBI CYCGRG 1 cut(s) 323
Bsp119I TTCGAA 2 cut(s) 437, 1229
Bsp1286I GDGCHC 4 cut(s) 361, 810, 1019, 1145
Bsp143I GATC 9 cut(s) 49, 130, 297, 346, 637, 815, 919, 1240, 1282
Bsp19I CCATGG 2 cut(s) 36, 263
BspACI CCGC 6 cut(s) 109, 486, 962, 981, 1004, 1040
BspANI GGCC 1 cut(s) 1007
BspLI GGNNCC 2 cut(s) 224, 368
BspMAI CTGCAG 2 cut(s) 607, 999
BspMI ACCTGC 3 cut(s) 341, 491, 1098
BspOI GCTAGC 1 cut(s) 1325
BspPI GGATC 4 cut(s) 125, 341, 632, 823
BspT104I TTCGAA 2 cut(s) 437, 1229
BsrI ACTGG 2 cut(s) 1009, 1378
BssECI CCNNGG 3 cut(s) 36, 141, 263
BssMI GATC 9 cut(s) 49, 130, 297, 346, 637, 815, 919, 1240, 1282
BssT1I CCWWGG 2 cut(s) 36, 263
Bst2UI CCWGG 2 cut(s) 120, 529
Bst4CI ACNGT 2 cut(s) 512, 646
Bst6I CTCTTC 2 cut(s) 241, 573
BstAPI GCANNNNNTGC 2 cut(s) 611, 1309
BstBI TTCGAA 2 cut(s) 437, 1229
BstC8I GCNNGC 3 cut(s) 959, 966, 1323
BstDEI CTNAG 1 cut(s) 272
BstDSI CCRYGG 2 cut(s) 36, 263
BstF5I GGATG 1 cut(s) 298
BstH2I RGCGCY 2 cut(s) 974, 992
BstHHI GCGC 3 cut(s) 973, 991, 1223
BstKTI GATC 9 cut(s) 52, 133, 300, 349, 640, 818, 922, 1243, 1285
BstMAI GTCTC 2 cut(s) 1199, 1257
BstMBI GATC 9 cut(s) 49, 130, 297, 346, 637, 815, 919, 1240, 1282
BstMWI GCNNNNNNNGC 8 cut(s) 201, 608, 611, 739, 970, 1104, 1309, 1318
BstNI CCWGG 2 cut(s) 120, 529
BstPAI GACNNNNGTC 1 cut(s) 335
BstSCI CCNGG 2 cut(s) 118, 527
BstSFI CTRYAG 3 cut(s) 603, 642, 995
BstSLI GKGCMC 1 cut(s) 810
BstV2I GAAGAC 1 cut(s) 335
BstX2I RGATCY 2 cut(s) 130, 815
BstXI CCANNNNNNTGG 2 cut(s) 94, 172
BstYI RGATCY 2 cut(s) 130, 815
BsuRI GGCC 1 cut(s) 1007
BtgI CCRYGG 2 cut(s) 36, 263
BtsCI GGATG 1 cut(s) 298
BtsIMutI CAGTG 2 cut(s) 1371, 1381
BveI ACCTGC 3 cut(s) 341, 491, 1098
Cac8I GCNNGC 3 cut(s) 959, 966, 1323
CaiI CAGNNNCTG 1 cut(s) 611
CfoI GCGC 3 cut(s) 973, 991, 1223
Cfr13I GGNCC 3 cut(s) 223, 367, 1006
CseI GACGC 1 cut(s) 325
CviAII CATG 7 cut(s) 37, 264, 658, 769, 811, 976, 1316
DdeI CTNAG 1 cut(s) 272
DpnI GATC 9 cut(s) 51, 132, 299, 348, 639, 817, 921, 1242, 1284
DpnII GATC 9 cut(s) 49, 130, 297, 346, 637, 815, 919, 1240, 1282
Eam1104I CTCTTC 2 cut(s) 241, 573
EarI CTCTTC 2 cut(s) 241, 573
EciI GGCGGA 1 cut(s) 970
Ecl136II GAGCTC 1 cut(s) 359
Eco130I CCWWGG 2 cut(s) 36, 263
Eco24I GRGCYC 2 cut(s) 361, 1019
Eco47I GGWCC 2 cut(s) 223, 367
Eco47III AGCGCT 1 cut(s) 990
Eco53kI GAGCTC 1 cut(s) 359
Eco57I CTGAAG 2 cut(s) 582, 597
Eco88I CYCGRG 1 cut(s) 323
EcoICRI GAGCTC 1 cut(s) 359
EcoO109I RGGNCCY 1 cut(s) 367
EcoRII CCWGG 2 cut(s) 118, 527
EcoT14I CCWWGG 2 cut(s) 36, 263
EcoT38I GRGCYC 2 cut(s) 361, 1019
ErhI CCWWGG 2 cut(s) 36, 263
FaeI CATG 7 cut(s) 40, 267, 661, 772, 814, 979, 1319
FaqI GGGAC 3 cut(s) 236, 380, 502
FatI CATG 7 cut(s) 36, 263, 657, 768, 810, 975, 1315
FauI CCCGC 1 cut(s) 479
FbaI TGATCA 2 cut(s) 297, 1240
FblI GTMKAC 1 cut(s) 312
FokI GGATG 1 cut(s) 305
FriOI GRGCYC 2 cut(s) 361, 1019
FspBI CTAG 6 cut(s) 75, 492, 588, 825, 1260, 1322
GlaI GCGC 3 cut(s) 972, 990, 1222
GsaI CCCAGC 2 cut(s) 68, 717
HaeII RGCGCY 2 cut(s) 974, 992
HaeIII GGCC 1 cut(s) 1007
HapII CCGG 3 cut(s) 6, 375, 397
HgaI GACGC 1 cut(s) 325
HhaI GCGC 3 cut(s) 973, 991, 1223
Hin1II CATG 7 cut(s) 40, 267, 661, 772, 814, 979, 1319
Hin6I GCGC 3 cut(s) 971, 989, 1221
HinP1I GCGC 3 cut(s) 971, 989, 1221
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 7 cut(s) 112, 186, 378, 736, 886, 1159, 1363
HpaII CCGG 3 cut(s) 6, 375, 397
HphI GGTGA 2 cut(s) 20, 894
Hpy166II GTNNAC 4 cut(s) 313, 340, 649, 808
Hpy188I TCNGA 4 cut(s) 460, 632, 700, 1248
Hpy188III TCNNGA 8 cut(s) 100, 134, 301, 354, 382, 680, 923, 1196
Hpy8I GTNNAC 4 cut(s) 313, 340, 649, 808
HpyAV CCTTC 5 cut(s) 35, 39, 301, 360, 1086
HpyCH4III ACNGT 2 cut(s) 512, 646
HpyCH4V TGCA 6 cut(s) 204, 605, 779, 808, 863, 997
HpyF10VI GCNNNNNNNGC 8 cut(s) 201, 608, 611, 739, 970, 1104, 1309, 1318
HpyF3I CTNAG 1 cut(s) 272
Hsp92II CATG 7 cut(s) 40, 267, 661, 772, 814, 979, 1319
HspAI GCGC 3 cut(s) 971, 989, 1221
Ksp22I TGATCA 2 cut(s) 297, 1240
Kzo9I GATC 9 cut(s) 49, 130, 297, 346, 637, 815, 919, 1240, 1282
LweI GCATC 3 cut(s) 127, 556, 872
MaeI CTAG 6 cut(s) 75, 492, 588, 825, 1260, 1322
MaeIII GTNAC 1 cut(s) 251
MalI GATC 9 cut(s) 51, 132, 299, 348, 639, 817, 921, 1242, 1284
MboI GATC 9 cut(s) 49, 130, 297, 346, 637, 815, 919, 1240, 1282
MboII GAAGA 9 cut(s) 115, 251, 258, 316, 340, 424, 451, 590, 1071
MfeI CAATTG 1 cut(s) 56
MflI RGATCY 2 cut(s) 130, 815
MhlI GDGCHC 4 cut(s) 361, 810, 1019, 1145
MluCI AATT 7 cut(s) 56, 664, 841, 853, 1211, 1225, 1290
MlyI GAGTC 1 cut(s) 1372
MnlI CCTC 4 cut(s) 136, 242, 1081, 1093
MroXI GAANNNNTTC 2 cut(s) 185, 389
MseI TTAA 4 cut(s) 663, 939, 1122, 1175
MslI CAYNNNNRTG 1 cut(s) 170
MspA1I CMGCKG 4 cut(s) 602, 611, 776, 1349
MspI CCGG 3 cut(s) 6, 375, 397
MspR9I CCNGG 2 cut(s) 120, 529
MunI CAATTG 1 cut(s) 56
Mva1269I GAATGC 1 cut(s) 1237
MvaI CCWGG 2 cut(s) 120, 529
MwoI GCNNNNNNNGC 8 cut(s) 201, 608, 611, 739, 970, 1104, 1309, 1318
NcoI CCATGG 2 cut(s) 36, 263
NdeII GATC 9 cut(s) 49, 130, 297, 346, 637, 815, 919, 1240, 1282
NheI GCTAGC 1 cut(s) 1321
NlaIII CATG 7 cut(s) 40, 267, 661, 772, 814, 979, 1319
NlaIV GGNNCC 2 cut(s) 224, 368
NmeAIII GCCGAG 1 cut(s) 166
NmuCI GTSAC 1 cut(s) 251
NspV TTCGAA 2 cut(s) 437, 1229
PctI GAATGC 1 cut(s) 1237
PdmI GAANNNNTTC 2 cut(s) 185, 389
PfeI GAWTC 6 cut(s) 112, 186, 378, 736, 886, 1159
PflMI CCANNNNNTGG 1 cut(s) 1373
PfoI TCCNGGA 1 cut(s) 527
PleI GAGTC 1 cut(s) 1371
PpsI GAGTC 1 cut(s) 1371
PpuMI RGGWCCY 1 cut(s) 367
PshAI GACNNNNGTC 1 cut(s) 335
PshBI ATTAAT 1 cut(s) 663
PsiI TTATAA 1 cut(s) 953
Psp124BI GAGCTC 1 cut(s) 361
Psp5II RGGWCCY 1 cut(s) 367
Psp6I CCWGG 2 cut(s) 118, 527
PspFI CCCAGC 2 cut(s) 64, 713
PspGI CCWGG 2 cut(s) 118, 527
PspN4I GGNNCC 2 cut(s) 224, 368
PspPI GGNCC 3 cut(s) 223, 367, 1006
PspPPI RGGWCCY 1 cut(s) 367
PstI CTGCAG 2 cut(s) 607, 999
PstNI CAGNNNCTG 1 cut(s) 611
PsuI RGATCY 2 cut(s) 130, 815
PvuII CAGCTG 4 cut(s) 602, 611, 776, 1349
RseI CAYNNNNRTG 1 cut(s) 170
SacI GAGCTC 1 cut(s) 361
SaqAI TTAA 4 cut(s) 663, 939, 1122, 1175
Sau3AI GATC 9 cut(s) 49, 130, 297, 346, 637, 815, 919, 1240, 1282
Sau96I GGNCC 3 cut(s) 223, 367, 1006
SchI GAGTC 1 cut(s) 1372
ScrFI CCNGG 2 cut(s) 120, 529
SduI GDGCHC 4 cut(s) 361, 810, 1019, 1145
SfaNI GCATC 3 cut(s) 127, 556, 872
SfcI CTRYAG 3 cut(s) 603, 642, 995
SfuI TTCGAA 2 cut(s) 437, 1229
SinI GGWCC 2 cut(s) 223, 367
SmiMI CAYNNNNRTG 1 cut(s) 170
SmlI CTYRAG 1 cut(s) 669
SmoI CTYRAG 1 cut(s) 669
SpeI ACTAGT 1 cut(s) 824
Sse9I AATT 7 cut(s) 56, 664, 841, 853, 1211, 1225, 1290
SsiI CCGC 6 cut(s) 109, 486, 962, 981, 1004, 1040
SspI AATATT 1 cut(s) 937
SspMI CTAG 6 cut(s) 75, 492, 588, 825, 1260, 1322
SstI GAGCTC 1 cut(s) 361
StyD4I CCNGG 2 cut(s) 118, 527
StyI CCWWGG 2 cut(s) 36, 263
TaaI ACNGT 2 cut(s) 512, 646
TasI AATT 7 cut(s) 56, 664, 841, 853, 1211, 1225, 1290
TauI GCSGC 2 cut(s) 964, 1007
TfiI GAWTC 6 cut(s) 112, 186, 378, 736, 886, 1159
Tru1I TTAA 4 cut(s) 663, 939, 1122, 1175
Tru9I TTAA 4 cut(s) 663, 939, 1122, 1175
TscAI CASTG 1 cut(s) 1378
TseFI GTSAC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 251
TspDTI ATGAA 8 cut(s) 178, 230, 532, 813, 1143, 1173, 1223, 1283
TspRI CASTG 1 cut(s) 1378
Van91I CCANNNNNTGG 1 cut(s) 1373
VneI GTGCAC 1 cut(s) 806
VpaK11BI GGWCC 2 cut(s) 223, 367
VspI ATTAAT 1 cut(s) 663
XapI RAATTY 4 cut(s) 841, 1211, 1225, 1290
XcmI CCANNNNNNNNNTGG 1 cut(s) 169
XmiI GTMKAC 1 cut(s) 312
XmnI GAANNNNTTC 2 cut(s) 185, 389
XspI CTAG 6 cut(s) 75, 492, 588, 825, 1260, 1322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.