Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013330.1

Orthogroup ID

OG0009752

Physical Location & Seq

Genomic Coordinates Reverse (-)

18045 .. 19495

Gene Structure 1451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013330.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

atgcatctatggcccagtcaacccagccaactagtggtcaaccctaattcaaaattacggtttcctgccgagattttcagaagagctcgtgctgtacttgcagtagctgcagatcccaggtccgccatcatagccgctttagccacttctagctccgctagccctttcgatgcctcatgggcgtctccatccctccgaccgccgtcacagaagtccgcgaactcaggcccgaacgcaactcagcatgaccagaaccattgtggcccgacactaccaaaagcagcgtctccatctccaatctcctacatcttgaatcccacggaccctctaaactgggtcatttcattgcaccgctccttgatcaacccgaacgaaggtccccaacacctgaaagatagcttcatcacgcatagagcattttgtgatgccctaactgaagagagtgctaggctcacttcagctgcagcagctgctacaaatctcaacttcggaaatgatcctacagtaaacaacaccatgattaattctcaagctgttcaggatgtttctcaaatctctgatttcgacaagcccagcagattatcgttttggctgaatcagcagccaaacaatctcaatgtgatggacatggcagctgcaaatcctaataatctgtatgaaatggtgcacatgggatctgccactagtctatttggctcaaattctatgtccaatttcggtgcctctacttcaacaagttctgcgaatctctccttatcatcaccgataggactaaaagatcaagaacgcagaaatattaaagccaacattataagcaagccgccagcagcgcccatgtccgccacagcgctgctgcagaaagcggcccagttgggctctactcgaagcagcaaccaaccgctttcgggcagcagcgtaggtgtaatgacctcgccttcttcctcaaacacaatgagcttcaacagcaggtcaaatgagcttaaccaactttttcaatcgagcactactacttcatcgaatctggttggctcgttaagttgttcatcgaatagtctcgaacaggtaatgaaattcggtggcgcaaattcgaatgcgattgatcatcagaatagtctaactagagactttttgggcgtgggagatcgtcaaattcataataggcagttcttgccacatgagctagccaagtttggttcgatgagttcagctgctatgggattgagtccattcactggcaaccactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008356 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010075 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0030856 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0048364 GO:0048507 GO:0048509 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051301 GO:0051302 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-C2H2_jaz

Protein Analysis

414

Amino Acids

44.05

Weight (kDa)

9.07

Isoelectric Point (pI)

56.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03150
fragaria_vesca	FvH4_6g15680 FvH4_6g15680
malus_domestica	MD04G1100300.v1.1 MD12G1120300.v1.1
prunus_persica	Prupe.6G238500_v2.0.a1
pyrus_communis	pycom04g09530 pycom12g11920 pycom13g01050 pycom16g00930
rosa_chinensis	RchiOBHm_Chr3g0469381
rosa_laevigata	RLG00000024354
rosa_multiflora	Rmu_sc0013330.1_g000003 Rmu_sc0013330.1_g000004
rosa_roxburghii	Rroxscaffold_6G00411940
rosa_rugosa	Rorug03G0101300
rosa_samantha	Rh3AG150300 Rh3BG174000 Rh3CG165000 Rh3DG201400
rosa_wichuraiana	Rw3G014170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	812
Acc36I	ACCTGC	1 cut(s)	957
AccB1I	GGYRCC	1 cut(s)	719
AccB7I	CCANNNNNTGG	2 cut(s)	34, 1232
AccBSI	CCGCTC	1 cut(s)	354
AccII	CGCG	1 cut(s)	218
AclWI	GGATC	3 cut(s)	107, 491, 682
AcsI	RAATTY	4 cut(s)	700, 1070, 1084, 1149
AcuI	CTGAAG	2 cut(s)	441, 456
AcyI	GRCGYC	1 cut(s)	182
AfaI	GTAC	1 cut(s)	96
AfeI	AGCGCT	1 cut(s)	849
AfiI	CCNNNNNNNGG	4 cut(s)	34, 374, 905, 1232
AgsI	TTSAA	5 cut(s)	51, 313, 732, 961, 995
AhlI	ACTAGT	2 cut(s)	31, 683
AjnI	CCWGG	1 cut(s)	116
Alw21I	GWGCWC	3 cut(s)	88, 669, 1004
Alw26I	GTCTC	4 cut(s)	189, 291, 1058, 1116
Alw44I	GTGCAC	1 cut(s)	665
AlwI	GGATC	3 cut(s)	107, 491, 682
AlwNI	CAGNNNCTG	2 cut(s)	107, 470
Aor51HI	AGCGCT	1 cut(s)	849
AoxI	GGCC	4 cut(s)	11, 226, 262, 864
ApaLI	GTGCAC	1 cut(s)	665
ApoI	RAATTY	4 cut(s)	700, 1070, 1084, 1149
ArsI	GACNNNNNNTTYG	4 cut(s)	269, 301, 692, 724
AseI	ATTAAT	1 cut(s)	522
AspLEI	GCGC	3 cut(s)	832, 850, 1082
AspS9I	GGNCC	7 cut(s)	12, 120, 227, 263, 322, 377, 865
AsuHPI	GGTGA	1 cut(s)	753
AsuII	TTCGAA	1 cut(s)	1088
AsuNHI	GCTAGC	2 cut(s)	158, 1180
AvaII	GGWCC	3 cut(s)	120, 322, 377
BaeGI	GKGCMC	1 cut(s)	669
BanI	GGYRCC	1 cut(s)	719
BanII	GRGCYC	2 cut(s)	88, 878
BauI	CACGAG	1 cut(s)	87
Bbv12I	GWGCWC	3 cut(s)	88, 669, 1004
BccI	CCATC	4 cut(s)	134, 196, 298, 616
BceAI	ACGGC	1 cut(s)	187
BciT130I	CCWGG	1 cut(s)	118
BclI	TGATCA	2 cut(s)	360, 1099
BcoDI	GTCTC	4 cut(s)	189, 291, 1058, 1116
BcuI	ACTAGT	2 cut(s)	31, 683
BfaI	CTAG	7 cut(s)	32, 150, 159, 447, 684, 1119, 1181
BfmI	CTRYAG	4 cut(s)	108, 462, 501, 854
BfoI	RGCGCY	2 cut(s)	833, 851
BfuAI	ACCTGC	1 cut(s)	957
BglI	GCCNNNNNGGC	1 cut(s)	179
Bme1390I	CCNGG	1 cut(s)	118
Bme18I	GGWCC	3 cut(s)	120, 322, 377
BmgT120I	GGNCC	7 cut(s)	12, 120, 227, 263, 322, 377, 865
BmiI	GGNNCC	3 cut(s)	324, 379, 721
BmrFI	CCNGG	1 cut(s)	118
BmrI	ACTGGG	3 cut(s)	9, 343, 862
BmsI	GCATC	3 cut(s)	13, 160, 415
BmtI	GCTAGC	2 cut(s)	162, 1184
BmuI	ACTGGG	3 cut(s)	9, 343, 862
BoxI	GACNNNNGTC	1 cut(s)	202
Bpu14I	TTCGAA	1 cut(s)	1088
BpuEI	CTTGAG	1 cut(s)	513
BsaHI	GRCGYC	1 cut(s)	182
BsaJI	CCNNGG	2 cut(s)	116, 318
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 374, 905, 1232
Bse1I	ACTGG	4 cut(s)	15, 338, 868, 1237
Bse3DI	GCAATG	1 cut(s)	344
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	2 cut(s)	116, 318
BseGI	GGATG	2 cut(s)	188, 547
BseLI	CCNNNNNNNGG	4 cut(s)	34, 374, 905, 1232
BseMI	GCAATG	1 cut(s)	344
BseMII	CTCAG	2 cut(s)	237, 254
BseNI	ACTGG	4 cut(s)	15, 338, 868, 1237
BseSI	GKGCMC	1 cut(s)	669
BseYI	CCCAGC	2 cut(s)	23, 572
Bsh1236I	CGCG	1 cut(s)	218
Bsh1285I	CGRYCG	1 cut(s)	200
BshFI	GGCC	4 cut(s)	13, 228, 264, 866
BshNI	GGYRCC	1 cut(s)	719
BsiEI	CGRYCG	1 cut(s)	200
BsiHKAI	GWGCWC	3 cut(s)	88, 669, 1004
BslFI	GGGAC	1 cut(s)	363
BslI	CCNNNNNNNGG	4 cut(s)	34, 374, 905, 1232
BsmAI	GTCTC	4 cut(s)	189, 291, 1058, 1116
BsmBI	CGTCTC	2 cut(s)	189, 291
BsmFI	GGGAC	1 cut(s)	363
BsmI	GAATGC	1 cut(s)	1096
BsnI	GGCC	4 cut(s)	13, 228, 264, 866
Bsp119I	TTCGAA	1 cut(s)	1088
Bsp1286I	GDGCHC	4 cut(s)	88, 669, 878, 1004
Bsp143I	GATC	7 cut(s)	112, 360, 496, 674, 778, 1099, 1141
BspANI	GGCC	4 cut(s)	13, 228, 264, 866
BspCNI	CTCAG	2 cut(s)	236, 253
BspFNI	CGCG	1 cut(s)	218
BspLI	GGNNCC	3 cut(s)	324, 379, 721
BspMAI	CTGCAG	3 cut(s)	112, 466, 858
BspMI	ACCTGC	1 cut(s)	957
BspOI	GCTAGC	2 cut(s)	162, 1184
BspPI	GGATC	3 cut(s)	107, 491, 682
BspQI	GCTCTTC	1 cut(s)	76
BspT104I	TTCGAA	1 cut(s)	1088
BspT107I	GGYRCC	1 cut(s)	719
BsrBI	CCGCTC	1 cut(s)	354
BsrDI	GCAATG	1 cut(s)	344
BsrI	ACTGG	4 cut(s)	15, 338, 868, 1237
BssECI	CCNNGG	2 cut(s)	116, 318
BssMI	GATC	7 cut(s)	112, 360, 496, 674, 778, 1099, 1141
BssNI	GRCGYC	1 cut(s)	182
BssSI	CACGAG	1 cut(s)	87
Bst2BI	CACGAG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	2 cut(s)	60, 505
Bst6I	CTCTTC	2 cut(s)	76, 432
BstACI	GRCGYC	1 cut(s)	182
BstAPI	GCANNNNNTGC	3 cut(s)	107, 470, 1168
BstBI	TTCGAA	1 cut(s)	1088
BstC8I	GCNNGC	4 cut(s)	160, 818, 825, 1182
BstDEI	CTNAG	2 cut(s)	223, 240
BstDSI	CCRYGG	1 cut(s)	318
BstF5I	GGATG	2 cut(s)	188, 547
BstFNI	CGCG	1 cut(s)	218
BstH2I	RGCGCY	2 cut(s)	833, 851
BstHHI	GCGC	3 cut(s)	832, 850, 1082
BstKTI	GATC	7 cut(s)	115, 363, 499, 677, 781, 1102, 1144
BstMAI	GTCTC	4 cut(s)	189, 291, 1058, 1116
BstMBI	GATC	7 cut(s)	112, 360, 496, 674, 778, 1099, 1141
BstMCI	CGRYCG	1 cut(s)	200
BstNI	CCWGG	1 cut(s)	118
BstPAI	GACNNNNGTC	1 cut(s)	202
BstSCI	CCNGG	1 cut(s)	116
BstSFI	CTRYAG	4 cut(s)	108, 462, 501, 854
BstSLI	GKGCMC	1 cut(s)	669
BstUI	CGCG	1 cut(s)	218
BstX2I	RGATCY	2 cut(s)	112, 674
BstYI	RGATCY	2 cut(s)	112, 674
BsuRI	GGCC	4 cut(s)	13, 228, 264, 866
BtgI	CCRYGG	1 cut(s)	318
BtsCI	GGATG	2 cut(s)	188, 547
BtsIMutI	CAGTG	2 cut(s)	1230, 1240
BveI	ACCTGC	1 cut(s)	957
Cac8I	GCNNGC	4 cut(s)	160, 818, 825, 1182
CaiI	CAGNNNCTG	2 cut(s)	107, 470
CfoI	GCGC	3 cut(s)	832, 850, 1082
Cfr13I	GGNCC	7 cut(s)	12, 120, 227, 263, 322, 377, 865
CseI	GACGC	2 cut(s)	171, 273
Csp6I	GTAC	1 cut(s)	95
CviAII	CATG	7 cut(s)	177, 245, 517, 628, 670, 835, 1175
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	2 cut(s)	223, 240
DpnI	GATC	7 cut(s)	114, 362, 498, 676, 780, 1101, 1143
DpnII	GATC	7 cut(s)	112, 360, 496, 674, 778, 1099, 1141
Eam1104I	CTCTTC	2 cut(s)	76, 432
EarI	CTCTTC	2 cut(s)	76, 432
EciI	GGCGGA	2 cut(s)	112, 829
Ecl136II	GAGCTC	1 cut(s)	86
Eco24I	GRGCYC	2 cut(s)	88, 878
Eco47I	GGWCC	3 cut(s)	120, 322, 377
Eco47III	AGCGCT	1 cut(s)	849
Eco53kI	GAGCTC	1 cut(s)	86
Eco57I	CTGAAG	2 cut(s)	441, 456
EcoICRI	GAGCTC	1 cut(s)	86
EcoO109I	RGGNCCY	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	116
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	88, 878
Esp3I	CGTCTC	2 cut(s)	189, 291
FaeI	CATG	7 cut(s)	180, 248, 520, 631, 673, 838, 1178
FaqI	GGGAC	1 cut(s)	363
FatI	CATG	7 cut(s)	176, 244, 516, 627, 669, 834, 1174
FbaI	TGATCA	2 cut(s)	360, 1099
FokI	GGATG	2 cut(s)	175, 554
FriOI	GRGCYC	2 cut(s)	88, 878
FspBI	CTAG	7 cut(s)	32, 150, 159, 447, 684, 1119, 1181
GlaI	GCGC	3 cut(s)	831, 849, 1081
GsaI	CCCAGC	2 cut(s)	27, 576
HaeII	RGCGCY	2 cut(s)	833, 851
HaeIII	GGCC	4 cut(s)	13, 228, 264, 866
HgaI	GACGC	2 cut(s)	171, 273
HhaI	GCGC	3 cut(s)	832, 850, 1082
Hin1I	GRCGYC	1 cut(s)	182
Hin1II	CATG	7 cut(s)	180, 248, 520, 631, 673, 838, 1178
Hin6I	GCGC	3 cut(s)	830, 848, 1080
HinP1I	GCGC	3 cut(s)	830, 848, 1080
HincII	GTYRAC	2 cut(s)	20, 40
HindII	GTYRAC	2 cut(s)	20, 40
HinfI	GANTC	5 cut(s)	313, 595, 745, 1018, 1222
HphI	GGTGA	1 cut(s)	753
Hpy166II	GTNNAC	4 cut(s)	20, 40, 508, 667
Hpy188I	TCNGA	5 cut(s)	80, 197, 491, 559, 1107
Hpy188III	TCNNGA	4 cut(s)	310, 539, 782, 1055
Hpy8I	GTNNAC	4 cut(s)	20, 40, 508, 667
HpyAV	CCTTC	2 cut(s)	368, 945
HpyCH4III	ACNGT	2 cut(s)	60, 505
HpyCH4V	TGCA	8 cut(s)	4, 101, 110, 349, 464, 638, 667, 856
HpyF3I	CTNAG	2 cut(s)	223, 240
Hsp92I	GRCGYC	1 cut(s)	182
Hsp92II	CATG	7 cut(s)	180, 248, 520, 631, 673, 838, 1178
HspAI	GCGC	3 cut(s)	830, 848, 1080
Ksp22I	TGATCA	2 cut(s)	360, 1099
Kzo9I	GATC	7 cut(s)	112, 360, 496, 674, 778, 1099, 1141
LguI	GCTCTTC	1 cut(s)	76
LmnI	GCTCC	2 cut(s)	158, 359
LweI	GCATC	3 cut(s)	13, 160, 415
MaeI	CTAG	7 cut(s)	32, 150, 159, 447, 684, 1119, 1181
MaeIII	GTNAC	1 cut(s)	204
MalI	GATC	7 cut(s)	114, 362, 498, 676, 780, 1101, 1143
MbiI	CCGCTC	1 cut(s)	354
MboI	GATC	7 cut(s)	112, 360, 496, 674, 778, 1099, 1141
MboII	GAAGA	3 cut(s)	93, 449, 930
MflI	RGATCY	2 cut(s)	112, 674
MhlI	GDGCHC	4 cut(s)	88, 669, 878, 1004
MluCI	AATT	8 cut(s)	46, 53, 523, 700, 712, 1070, 1084, 1149
MlyI	GAGTC	1 cut(s)	1231
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	6 cut(s)	184, 203, 336, 733, 940, 952
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	4 cut(s)	522, 798, 981, 1034
MspA1I	CMGCKG	4 cut(s)	461, 470, 635, 1208
MspR9I	CCNGG	1 cut(s)	118
Mva1269I	GAATGC	1 cut(s)	1096
MvaI	CCWGG	1 cut(s)	118
MvnI	CGCG	1 cut(s)	218
NdeII	GATC	7 cut(s)	112, 360, 496, 674, 778, 1099, 1141
NheI	GCTAGC	2 cut(s)	158, 1180
NlaIII	CATG	7 cut(s)	180, 248, 520, 631, 673, 838, 1178
NlaIV	GGNNCC	3 cut(s)	324, 379, 721
NmeAIII	GCCGAG	1 cut(s)	94
NmuCI	GTSAC	1 cut(s)	204
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	1088
PciSI	GCTCTTC	1 cut(s)	76
PctI	GAATGC	1 cut(s)	1096
PfeI	GAWTC	4 cut(s)	313, 595, 745, 1018
PflMI	CCANNNNNTGG	2 cut(s)	34, 1232
PleI	GAGTC	1 cut(s)	1230
PpsI	GAGTC	1 cut(s)	1230
PpuMI	RGGWCCY	1 cut(s)	377
PshAI	GACNNNNGTC	1 cut(s)	202
PshBI	ATTAAT	1 cut(s)	522
PsiI	TTATAA	1 cut(s)	812
Psp124BI	GAGCTC	1 cut(s)	88
Psp5II	RGGWCCY	1 cut(s)	377
Psp6I	CCWGG	1 cut(s)	116
PspFI	CCCAGC	2 cut(s)	23, 572
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	3 cut(s)	324, 379, 721
PspPI	GGNCC	7 cut(s)	12, 120, 227, 263, 322, 377, 865
PspPPI	RGGWCCY	1 cut(s)	377
PstI	CTGCAG	3 cut(s)	112, 466, 858
PstNI	CAGNNNCTG	2 cut(s)	107, 470
PsuI	RGATCY	2 cut(s)	112, 674
PvuII	CAGCTG	4 cut(s)	461, 470, 635, 1208
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
SacI	GAGCTC	1 cut(s)	88
SapI	GCTCTTC	1 cut(s)	76
SaqAI	TTAA	4 cut(s)	522, 798, 981, 1034
Sau3AI	GATC	7 cut(s)	112, 360, 496, 674, 778, 1099, 1141
Sau96I	GGNCC	7 cut(s)	12, 120, 227, 263, 322, 377, 865
SchI	GAGTC	1 cut(s)	1231
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	4 cut(s)	88, 669, 878, 1004
SfaNI	GCATC	3 cut(s)	13, 160, 415
SfcI	CTRYAG	4 cut(s)	108, 462, 501, 854
SfuI	TTCGAA	1 cut(s)	1088
SinI	GGWCC	3 cut(s)	120, 322, 377
SmlI	CTYRAG	1 cut(s)	528
SmoI	CTYRAG	1 cut(s)	528
SpeI	ACTAGT	2 cut(s)	31, 683
Sse9I	AATT	8 cut(s)	46, 53, 523, 700, 712, 1070, 1084, 1149
SspI	AATATT	1 cut(s)	796
SspMI	CTAG	7 cut(s)	32, 150, 159, 447, 684, 1119, 1181
SstI	GAGCTC	1 cut(s)	88
StyD4I	CCNGG	1 cut(s)	116
TaaI	ACNGT	2 cut(s)	60, 505
TaqI	TCGA	9 cut(s)	168, 564, 883, 998, 1016, 1046, 1056, 1088, 1196
TasI	AATT	8 cut(s)	46, 53, 523, 700, 712, 1070, 1084, 1149
TatI	WGTACW	1 cut(s)	94
TauI	GCSGC	3 cut(s)	137, 823, 866
TfiI	GAWTC	4 cut(s)	313, 595, 745, 1018
Tru1I	TTAA	4 cut(s)	522, 798, 981, 1034
Tru9I	TTAA	4 cut(s)	522, 798, 981, 1034
TscAI	CASTG	1 cut(s)	1237
TseFI	GTSAC	1 cut(s)	204
Tsp45I	GTSAC	1 cut(s)	204
TspDTI	ATGAA	7 cut(s)	333, 391, 672, 1002, 1032, 1082, 1142
TspGWI	ACGGA	1 cut(s)	335
TspRI	CASTG	1 cut(s)	1237
Van91I	CCANNNNNTGG	2 cut(s)	34, 1232
VneI	GTGCAC	1 cut(s)	665
VpaK11BI	GGWCC	3 cut(s)	120, 322, 377
VspI	ATTAAT	1 cut(s)	522
XapI	RAATTY	4 cut(s)	700, 1070, 1084, 1149
XcmI	CCANNNNNNNNNTGG	2 cut(s)	31, 257
XspI	CTAG	7 cut(s)	32, 150, 159, 447, 684, 1119, 1181
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.