Rh3CG165000

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0009752
Physical Location & Seq
Forward (+)
14001050 .. 14004213
3164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG165000.1

Sequence Viewer

Length: 1215 bp
ATGGCAACGAACAGATTCATCTGCGAGATATGCAACAAGGGTTTCCAAAGGGACCAGAACTTACAGCTTCATCGAAGAGGTCACAATCTTCCATGGAAGCTTAGGCAAAGAACGAACAAGGATGTGATCAAGAAGAAGGTCTACATTTGCCCCGAGAAGACCTGCGTCCACCACGATCCTTCGAGAGCTCTTGGGGACCTTACCGGAATCAAGAAGCATTTCAGCCGGAAACACGGCGAGAAGAAGTGGAAGTGCGAGAAGTGTTCGAAGAAATACGCAGTCCAATCGGATTGGAAAGCTCACTCCAAGACCTGCGGGACTAGGGAGTATAAGTGCGACTGTGGAACTCTATTTTCCAGGAAAGATAGCTTCATCACGCATAGAGCATTTTGTGATGCCCTAACTGAAGAGAGTGCTAGGCTCACTTCAGCTGCAGCAGCTGCTACAAATCTCAACTTCGGAAATGATCCTACAGTAAACAACACCATGATTAATTCTCAAGCTGTTCAAGATGTTTCTCAAATCTCTGATTTCGACAAGCCCAGCAGATTATCGTTTTGGCTGAATCAGCAGCCAAACAATCTCAATGTGATGGACATGGCAGTTGCAAATCCTAATAATCTGTATGAAATGGTGCACATGGGATCTGCCACTAGTCTATTTGGCTCAAATTCTATGTCCAATTTCGGTGCCTCTACTTCAACAAGTTCTGCGAATCTCTCCTTATCATCACCGATAGGAATAAAAGATCAAGAACGCAGAAATATTAAAGCCAACATTATAAGCAAGCCGCCAGCAGCGCCCATGTCCGCCACAGCGCTGCTGCAGAAAGCGGCCCAGTTGGGCTCTACTCGAAGCAGCAACCAACCGCTTTCGGGCAGCAGCGTAGGTGTAATGACCTCGCCTTCTTCCTCAAACACAATGAGCTTCAACAGCAGGTCAAATGAGCTTAACCAACTTTTTCAATCGAGCACTACTACTTCATCGAATCTGGTTAGCTCGTTAAGTTGTTCATCGAATAGTCTCGAACAGGTAATGAAATTCGGTGGCGCAAATTCGAATGCGATTGATCATCAGAATAGTCTAACTAGAGACTTTTTGGGCGTGGGAGATCGTCAAATTCATAATAGGCAGTTCTTGCCACATGAGCTAGCCAAGTTTGGTTCGATGAGTTCAGCTGCTATGGGACTGAGTCCATTCACTGGCAATCACTGA

Protein Analysis

404

Amino Acids

44.36

Weight (kDa)

9.56

Isoelectric Point (pI)

46.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2H2-2nd_BIRD-IDD PF22996 44 - 78 6.4e-22 BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD PF22995 82 - 106 9.8e-15 BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD PF22992 109 - 147 2e-23 BIRD-IDD transcription factor, fourth C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 782
Acc36I ACCTGC 3 cut(s) 170, 320, 927
AccB1I GGYRCC 1 cut(s) 689
AccB7I CCANNNNNTGG 1 cut(s) 1202
AccI GTMKAC 1 cut(s) 141
AciI CCGC 5 cut(s) 315, 791, 810, 833, 869
AclWI GGATC 3 cut(s) 170, 461, 652
AcsI RAATTY 4 cut(s) 670, 1040, 1054, 1119
AcuI CTGAAG 2 cut(s) 411, 426
AfeI AGCGCT 1 cut(s) 819
AfiI CCNNNNNNNGG 2 cut(s) 875, 1202
AgsI TTSAA 4 cut(s) 509, 702, 931, 965
AhlI ACTAGT 1 cut(s) 653
AjnI CCWGG 1 cut(s) 356
Alw21I GWGCWC 3 cut(s) 190, 639, 974
Alw26I GTCTC 2 cut(s) 1028, 1086
Alw44I GTGCAC 1 cut(s) 635
AlwI GGATC 3 cut(s) 170, 461, 652
AlwNI CAGNNNCTG 1 cut(s) 440
Ama87I CYCGRG 1 cut(s) 152
Aor51HI AGCGCT 1 cut(s) 819
AoxI GGCC 1 cut(s) 834
ApaLI GTGCAC 1 cut(s) 635
ApoI RAATTY 4 cut(s) 670, 1040, 1054, 1119
ArsI GACNNNNNNTTYG 2 cut(s) 662, 694
AseI ATTAAT 1 cut(s) 492
Asp700I GAANNNNTTC 2 cut(s) 14, 218
AspLEI GCGC 3 cut(s) 802, 820, 1052
AspS9I GGNCC 3 cut(s) 52, 196, 835
AsuHPI GGTGA 1 cut(s) 723
AsuII TTCGAA 2 cut(s) 266, 1058
AsuNHI GCTAGC 1 cut(s) 1150
AvaI CYCGRG 1 cut(s) 152
AvaII GGWCC 2 cut(s) 52, 196
BaeGI GKGCMC 1 cut(s) 639
BanI GGYRCC 1 cut(s) 689
BanII GRGCYC 2 cut(s) 190, 848
BarI GAAGNNNNNNTAC 2 cut(s) 125, 157
BbsI GAAGAC 1 cut(s) 164
Bbv12I GWGCWC 3 cut(s) 190, 639, 974
BccI CCATC 1 cut(s) 586
BceAI ACGGC 1 cut(s) 250
BcgI CGANNNNNNTGC 2 cut(s) 267, 301
BciT130I CCWGG 1 cut(s) 358
BclI TGATCA 2 cut(s) 126, 1069
BcoDI GTCTC 2 cut(s) 1028, 1086
BcuI ACTAGT 1 cut(s) 653
BfaI CTAG 5 cut(s) 321, 417, 654, 1089, 1151
BfmI CTRYAG 3 cut(s) 432, 471, 824
BfoI RGCGCY 2 cut(s) 803, 821
BfuAI ACCTGC 3 cut(s) 170, 320, 927
Bme1390I CCNGG 1 cut(s) 358
Bme18I GGWCC 2 cut(s) 52, 196
BmeT110I CYCGRG 1 cut(s) 152
BmgT120I GGNCC 3 cut(s) 52, 196, 835
BmiI GGNNCC 3 cut(s) 53, 197, 691
BmrFI CCNGG 1 cut(s) 358
BmrI ACTGGG 1 cut(s) 832
BmsI GCATC 1 cut(s) 385
BmtI GCTAGC 1 cut(s) 1154
BmuI ACTGGG 1 cut(s) 832
BoxI GACNNNNGTC 1 cut(s) 164
BpiI GAAGAC 1 cut(s) 164
Bpu10I CCTNAGC 1 cut(s) 101
Bpu14I TTCGAA 2 cut(s) 266, 1058
BpuEI CTTGAG 1 cut(s) 483
BsaJI CCNNGG 1 cut(s) 92
BsaWI WCCGGW 1 cut(s) 203
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bsc4I CCNNNNNNNGG 2 cut(s) 875, 1202
Bse1I ACTGG 2 cut(s) 838, 1207
BseBI CCWGG 1 cut(s) 358
BseDI CCNNGG 1 cut(s) 92
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 2 cut(s) 875, 1202
BseMII CTCAG 1 cut(s) 1181
BseNI ACTGG 2 cut(s) 838, 1207
BseSI GKGCMC 1 cut(s) 639
BseYI CCCAGC 1 cut(s) 542
BshFI GGCC 1 cut(s) 836
BshNI GGYRCC 1 cut(s) 689
BsiHKAI GWGCWC 3 cut(s) 190, 639, 974
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 2 cut(s) 204, 226
BslFI GGGAC 4 cut(s) 65, 209, 331, 1200
BslI CCNNNNNNNGG 2 cut(s) 875, 1202
BsmAI GTCTC 2 cut(s) 1028, 1086
BsmFI GGGAC 4 cut(s) 65, 209, 331, 1200
BsmI GAATGC 1 cut(s) 1066
BsnI GGCC 1 cut(s) 836
BsoBI CYCGRG 1 cut(s) 152
Bsp119I TTCGAA 2 cut(s) 266, 1058
Bsp1286I GDGCHC 4 cut(s) 190, 639, 848, 974
Bsp143I GATC 7 cut(s) 126, 175, 466, 644, 748, 1069, 1111
Bsp19I CCATGG 1 cut(s) 92
BspACI CCGC 5 cut(s) 315, 791, 810, 833, 869
BspANI GGCC 1 cut(s) 836
BspCNI CTCAG 1 cut(s) 1182
BspLI GGNNCC 3 cut(s) 53, 197, 691
BspMAI CTGCAG 2 cut(s) 436, 828
BspMI ACCTGC 3 cut(s) 170, 320, 927
BspOI GCTAGC 1 cut(s) 1154
BspPI GGATC 3 cut(s) 170, 461, 652
BspT104I TTCGAA 2 cut(s) 266, 1058
BspT107I GGYRCC 1 cut(s) 689
BsrI ACTGG 2 cut(s) 838, 1207
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 7 cut(s) 126, 175, 466, 644, 748, 1069, 1111
BssT1I CCWWGG 1 cut(s) 92
Bst2UI CCWGG 1 cut(s) 358
Bst4CI ACNGT 2 cut(s) 341, 475
Bst6I CTCTTC 2 cut(s) 70, 402
BstAPI GCANNNNNTGC 2 cut(s) 440, 1138
BstBI TTCGAA 2 cut(s) 266, 1058
BstC8I GCNNGC 3 cut(s) 788, 795, 1152
BstDEI CTNAG 2 cut(s) 101, 1190
BstDSI CCRYGG 1 cut(s) 92
BstF5I GGATG 1 cut(s) 127
BstH2I RGCGCY 2 cut(s) 803, 821
BstHHI GCGC 3 cut(s) 802, 820, 1052
BstKTI GATC 7 cut(s) 129, 178, 469, 647, 751, 1072, 1114
BstMAI GTCTC 2 cut(s) 1028, 1086
BstMBI GATC 7 cut(s) 126, 175, 466, 644, 748, 1069, 1111
BstMWI GCNNNNNNNGC 8 cut(s) 30, 437, 440, 568, 799, 933, 1138, 1147
BstNI CCWGG 1 cut(s) 358
BstPAI GACNNNNGTC 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 356
BstSFI CTRYAG 3 cut(s) 432, 471, 824
BstSLI GKGCMC 1 cut(s) 639
BstV2I GAAGAC 1 cut(s) 164
BstX2I RGATCY 1 cut(s) 644
BstYI RGATCY 1 cut(s) 644
BsuRI GGCC 1 cut(s) 836
BtgI CCRYGG 1 cut(s) 92
BtsCI GGATG 1 cut(s) 127
BtsIMutI CAGTG 2 cut(s) 1200, 1210
BveI ACCTGC 3 cut(s) 170, 320, 927
Cac8I GCNNGC 3 cut(s) 788, 795, 1152
CaiI CAGNNNCTG 1 cut(s) 440
CfoI GCGC 3 cut(s) 802, 820, 1052
Cfr13I GGNCC 3 cut(s) 52, 196, 835
CseI GACGC 1 cut(s) 154
CviAII CATG 6 cut(s) 93, 487, 598, 640, 805, 1145
DdeI CTNAG 2 cut(s) 101, 1190
DpnI GATC 7 cut(s) 128, 177, 468, 646, 750, 1071, 1113
DpnII GATC 7 cut(s) 126, 175, 466, 644, 748, 1069, 1111
Eam1104I CTCTTC 2 cut(s) 70, 402
EarI CTCTTC 2 cut(s) 70, 402
EciI GGCGGA 1 cut(s) 799
Ecl136II GAGCTC 1 cut(s) 188
Eco130I CCWWGG 1 cut(s) 92
Eco24I GRGCYC 2 cut(s) 190, 848
Eco47I GGWCC 2 cut(s) 52, 196
Eco47III AGCGCT 1 cut(s) 819
Eco53kI GAGCTC 1 cut(s) 188
Eco57I CTGAAG 2 cut(s) 411, 426
Eco88I CYCGRG 1 cut(s) 152
EcoICRI GAGCTC 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 356
EcoT14I CCWWGG 1 cut(s) 92
EcoT38I GRGCYC 2 cut(s) 190, 848
ErhI CCWWGG 1 cut(s) 92
FaeI CATG 6 cut(s) 96, 490, 601, 643, 808, 1148
FaqI GGGAC 4 cut(s) 65, 209, 331, 1200
FatI CATG 6 cut(s) 92, 486, 597, 639, 804, 1144
FauI CCCGC 1 cut(s) 308
FbaI TGATCA 2 cut(s) 126, 1069
FblI GTMKAC 1 cut(s) 141
FokI GGATG 1 cut(s) 134
FriOI GRGCYC 2 cut(s) 190, 848
FspBI CTAG 5 cut(s) 321, 417, 654, 1089, 1151
GlaI GCGC 3 cut(s) 801, 819, 1051
GsaI CCCAGC 1 cut(s) 546
HaeII RGCGCY 2 cut(s) 803, 821
HaeIII GGCC 1 cut(s) 836
HapII CCGG 2 cut(s) 204, 226
HgaI GACGC 1 cut(s) 154
HhaI GCGC 3 cut(s) 802, 820, 1052
Hin1II CATG 6 cut(s) 96, 490, 601, 643, 808, 1148
Hin6I GCGC 3 cut(s) 800, 818, 1050
HinP1I GCGC 3 cut(s) 800, 818, 1050
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 6 cut(s) 15, 207, 565, 715, 988, 1192
HpaII CCGG 2 cut(s) 204, 226
HphI GGTGA 1 cut(s) 723
Hpy166II GTNNAC 4 cut(s) 142, 169, 478, 637
Hpy188I TCNGA 4 cut(s) 289, 461, 529, 1077
Hpy188III TCNNGA 6 cut(s) 130, 183, 211, 509, 752, 1025
Hpy8I GTNNAC 4 cut(s) 142, 169, 478, 637
HpyAV CCTTC 3 cut(s) 130, 189, 915
HpyCH4III ACNGT 2 cut(s) 341, 475
HpyCH4V TGCA 5 cut(s) 33, 434, 608, 637, 826
HpyF10VI GCNNNNNNNGC 8 cut(s) 30, 437, 440, 568, 799, 933, 1138, 1147
HpyF3I CTNAG 2 cut(s) 101, 1190
Hsp92II CATG 6 cut(s) 96, 490, 601, 643, 808, 1148
HspAI GCGC 3 cut(s) 800, 818, 1050
Ksp22I TGATCA 2 cut(s) 126, 1069
Kzo9I GATC 7 cut(s) 126, 175, 466, 644, 748, 1069, 1111
LweI GCATC 1 cut(s) 385
MaeI CTAG 5 cut(s) 321, 417, 654, 1089, 1151
MaeIII GTNAC 1 cut(s) 80
MalI GATC 7 cut(s) 128, 177, 468, 646, 750, 1071, 1113
MboI GATC 7 cut(s) 126, 175, 466, 644, 748, 1069, 1111
MboII GAAGA 8 cut(s) 80, 87, 145, 169, 253, 280, 419, 900
MflI RGATCY 1 cut(s) 644
MhlI GDGCHC 4 cut(s) 190, 639, 848, 974
MluCI AATT 6 cut(s) 493, 670, 682, 1040, 1054, 1119
MlyI GAGTC 1 cut(s) 1201
MnlI CCTC 4 cut(s) 71, 703, 910, 922
MroXI GAANNNNTTC 2 cut(s) 14, 218
MseI TTAA 4 cut(s) 492, 768, 951, 1004
MspA1I CMGCKG 3 cut(s) 431, 440, 1178
MspI CCGG 2 cut(s) 204, 226
MspR9I CCNGG 1 cut(s) 358
Mva1269I GAATGC 1 cut(s) 1066
MvaI CCWGG 1 cut(s) 358
MwoI GCNNNNNNNGC 8 cut(s) 30, 437, 440, 568, 799, 933, 1138, 1147
NcoI CCATGG 1 cut(s) 92
NdeII GATC 7 cut(s) 126, 175, 466, 644, 748, 1069, 1111
NheI GCTAGC 1 cut(s) 1150
NlaIII CATG 6 cut(s) 96, 490, 601, 643, 808, 1148
NlaIV GGNNCC 3 cut(s) 53, 197, 691
NmuCI GTSAC 1 cut(s) 80
NspV TTCGAA 2 cut(s) 266, 1058
PctI GAATGC 1 cut(s) 1066
PdmI GAANNNNTTC 2 cut(s) 14, 218
PfeI GAWTC 5 cut(s) 15, 207, 565, 715, 988
PflFI GACNNNGTC 1 cut(s) 1191
PflMI CCANNNNNTGG 1 cut(s) 1202
PfoI TCCNGGA 1 cut(s) 356
PleI GAGTC 1 cut(s) 1200
PpsI GAGTC 1 cut(s) 1200
PpuMI RGGWCCY 1 cut(s) 196
PshAI GACNNNNGTC 1 cut(s) 164
PshBI ATTAAT 1 cut(s) 492
PsiI TTATAA 1 cut(s) 782
Psp124BI GAGCTC 1 cut(s) 190
Psp5II RGGWCCY 1 cut(s) 196
Psp6I CCWGG 1 cut(s) 356
PspFI CCCAGC 1 cut(s) 542
PspGI CCWGG 1 cut(s) 356
PspN4I GGNNCC 3 cut(s) 53, 197, 691
PspPI GGNCC 3 cut(s) 52, 196, 835
PspPPI RGGWCCY 1 cut(s) 196
PstI CTGCAG 2 cut(s) 436, 828
PstNI CAGNNNCTG 1 cut(s) 440
PsuI RGATCY 1 cut(s) 644
PsyI GACNNNGTC 1 cut(s) 1191
PvuII CAGCTG 3 cut(s) 431, 440, 1178
SacI GAGCTC 1 cut(s) 190
SaqAI TTAA 4 cut(s) 492, 768, 951, 1004
Sau3AI GATC 7 cut(s) 126, 175, 466, 644, 748, 1069, 1111
Sau96I GGNCC 3 cut(s) 52, 196, 835
SchI GAGTC 1 cut(s) 1201
ScrFI CCNGG 1 cut(s) 358
SduI GDGCHC 4 cut(s) 190, 639, 848, 974
SfaNI GCATC 1 cut(s) 385
SfcI CTRYAG 3 cut(s) 432, 471, 824
SfuI TTCGAA 2 cut(s) 266, 1058
SinI GGWCC 2 cut(s) 52, 196
SmlI CTYRAG 1 cut(s) 498
SmoI CTYRAG 1 cut(s) 498
SpeI ACTAGT 1 cut(s) 653
Sse9I AATT 6 cut(s) 493, 670, 682, 1040, 1054, 1119
SsiI CCGC 5 cut(s) 315, 791, 810, 833, 869
SspI AATATT 1 cut(s) 766
SspMI CTAG 5 cut(s) 321, 417, 654, 1089, 1151
SstI GAGCTC 1 cut(s) 190
StyD4I CCNGG 1 cut(s) 356
StyI CCWWGG 1 cut(s) 92
TaaI ACNGT 2 cut(s) 341, 475
TasI AATT 6 cut(s) 493, 670, 682, 1040, 1054, 1119
TauI GCSGC 2 cut(s) 793, 836
TfiI GAWTC 5 cut(s) 15, 207, 565, 715, 988
Tru1I TTAA 4 cut(s) 492, 768, 951, 1004
Tru9I TTAA 4 cut(s) 492, 768, 951, 1004
TscAI CASTG 1 cut(s) 1207
TseFI GTSAC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 8 cut(s) 7, 59, 361, 642, 972, 1002, 1052, 1112
TspRI CASTG 1 cut(s) 1207
Tth111I GACNNNGTC 1 cut(s) 1191
Van91I CCANNNNNTGG 1 cut(s) 1202
VneI GTGCAC 1 cut(s) 635
VpaK11BI GGWCC 2 cut(s) 52, 196
VspI ATTAAT 1 cut(s) 492
XapI RAATTY 4 cut(s) 670, 1040, 1054, 1119
XmiI GTMKAC 1 cut(s) 141
XmnI GAANNNNTTC 2 cut(s) 14, 218
XspI CTAG 5 cut(s) 321, 417, 654, 1089, 1151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.