Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009752

Physical Location & Seq

Genomic Coordinates Reverse (-)

7929281 .. 7929565

Gene Structure 285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0101300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGTATTTAAAAGTTAATGTAGACGGAGCTTGGGATAGCAATAATCACAAAAGCGGGATTGGGGTGATTATCAAGAACCACAGGGGCCAATCAATTGCTGGAGCTAACATTCTTGGCTGCCACAATACAGCTGTTGAAGTCGAAGCCGAGGGAGTGGTTAAAGGTCTCCAGCTTGCTGCATTCTTAAAGCACCAAAATATTATTCTAGAAGGTGACTGTCAAGAGGTCTTCAACTGTGATGCCCCGGAAATTTGTATTTATTTTCGAGGATTTTCCAGAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008356 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010075 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0030856 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0048364 GO:0048507 GO:0048509 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051301 GO:0051302 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-C2H2_jaz

Protein Analysis

94

Amino Acids

10.27

Weight (kDa)

6.02

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	6 - 78	3.2e-15	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03150
fragaria_vesca	FvH4_6g15680 FvH4_6g15680
malus_domestica	MD04G1100300.v1.1 MD12G1120300.v1.1
prunus_persica	Prupe.6G238500_v2.0.a1
pyrus_communis	pycom04g09530 pycom12g11920 pycom13g01050 pycom16g00930
rosa_chinensis	RchiOBHm_Chr3g0469381
rosa_laevigata	RLG00000024354
rosa_multiflora	Rmu_sc0013330.1_g000003 Rmu_sc0013330.1_g000004
rosa_roxburghii	Rroxscaffold_6G00411940
rosa_rugosa	Rorug03G0101300
rosa_samantha	Rh3AG150300 Rh3BG174000 Rh3CG165000 Rh3DG201400
rosa_wichuraiana	Rw3G014170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	21
AciI	CCGC	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	249
AgsI	TTSAA	2 cut(s)	137, 232
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	4 cut(s)	29, 104, 131, 172
AluI	AGCT	4 cut(s)	29, 104, 131, 172
Alw26I	GTCTC	1 cut(s)	170
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	2 cut(s)	117, 176
ApoI	RAATTY	1 cut(s)	249
AspS9I	GGNCC	1 cut(s)	85
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	2 cut(s)	76, 224
BbsI	GAAGAC	1 cut(s)	220
BbvI	GCAGC	2 cut(s)	104, 163
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	1 cut(s)	206
BisI	GCNGC	2 cut(s)	118, 177
BlsI	GCNGC	2 cut(s)	119, 178
Bme1390I	CCNGG	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	86
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	1 cut(s)	229
BpiI	GAAGAC	1 cut(s)	220
BpmI	CTGGAG	2 cut(s)	120, 152
BpuMI	CCSGG	1 cut(s)	245
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	147, 243
BseDI	CCNNGG	2 cut(s)	147, 243
BseXI	GCAGC	2 cut(s)	104, 163
BshFI	GGCC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	245
BsmAI	GTCTC	1 cut(s)	170
BsmI	GAATGC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	87
Bso31I	GGTCTC	1 cut(s)	170
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	86
BspTNI	GGTCTC	1 cut(s)	170
BssECI	CCNNGG	2 cut(s)	147, 243
Bst4CI	ACNGT	2 cut(s)	218, 236
BstC8I	GCNNGC	1 cut(s)	174
BstMAI	GTCTC	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	243
BstV1I	GCAGC	2 cut(s)	104, 163
BstV2I	GAAGAC	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	85
CviJI	RGCY	7 cut(s)	29, 87, 104, 117, 131, 146, 172
CviKI_1	RGCY	7 cut(s)	29, 87, 104, 117, 131, 146, 172
DraI	TTTAAA	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	170
FauI	CCCGC	1 cut(s)	47
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	2 cut(s)	118, 177
Fsp4HI	GCNGC	2 cut(s)	118, 177
FspBI	CTAG	1 cut(s)	206
GluI	GCNGC	2 cut(s)	118, 177
GsuI	CTGGAG	2 cut(s)	120, 152
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	1 cut(s)	245
HinfI	GANTC	1 cut(s)	279
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	2 cut(s)	76, 224
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188III	TCNNGA	4 cut(s)	73, 206, 221, 276
Hpy8I	GTNNAC	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	2 cut(s)	218, 236
HpyCH4V	TGCA	1 cut(s)	179
LmnI	GCTCC	2 cut(s)	26, 101
LpnPI	CCDG	4 cut(s)	67, 84, 182, 258
Lsp1109I	GCAGC	2 cut(s)	104, 163
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	206
MaeIII	GTNAC	1 cut(s)	212
MboII	GAAGA	1 cut(s)	220
MfeI	CAATTG	1 cut(s)	93
MluCI	AATT	2 cut(s)	93, 249
MnlI	CCTC	3 cut(s)	142, 217, 260
MseI	TTAA	4 cut(s)	8, 15, 159, 185
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	245
MunI	CAATTG	1 cut(s)	93
Mva1269I	GAATGC	1 cut(s)	179
NciI	CCSGG	1 cut(s)	245
NlaIV	GGNNCC	1 cut(s)	86
NmeAIII	GCCGAG	1 cut(s)	172
NmuCI	GTSAC	1 cut(s)	212
PctI	GAATGC	1 cut(s)	179
PfeI	GAWTC	1 cut(s)	279
PkrI	GCNGC	2 cut(s)	119, 178
PspN4I	GGNNCC	1 cut(s)	86
PspPI	GGNCC	1 cut(s)	85
PvuII	CAGCTG	1 cut(s)	131
SaqAI	TTAA	4 cut(s)	8, 15, 159, 185
SatI	GCNGC	2 cut(s)	118, 177
Sau96I	GGNCC	1 cut(s)	85
ScrFI	CCNGG	1 cut(s)	245
SetI	ASST	7 cut(s)	31, 106, 133, 166, 174, 214, 228
SfaNI	GCATC	1 cut(s)	229
Sse9I	AATT	2 cut(s)	93, 249
SsiI	CCGC	1 cut(s)	54
SspI	AATATT	1 cut(s)	199
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	218, 236
TaqI	TCGA	2 cut(s)	141, 265
TasI	AATT	2 cut(s)	93, 249
TfiI	GAWTC	1 cut(s)	279
Tru1I	TTAA	4 cut(s)	8, 15, 159, 185
Tru9I	TTAA	4 cut(s)	8, 15, 159, 185
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	2 cut(s)	117, 176
Tsp45I	GTSAC	1 cut(s)	212
TspGWI	ACGGA	1 cut(s)	39
XapI	RAATTY	1 cut(s)	249
XbaI	TCTAGA	1 cut(s)	205
XcmI	CCANNNNNNNNNTGG	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	21
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.