Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009752

Physical Location & Seq

Genomic Coordinates Forward (+)

694118 .. 694531

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g01050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAACTCTCTTGCAAATGGCAACTCCTCGATTTTCGGAGGCGGGGGACTGGATCATAACAACTTTGGCGGGTTTAGTAGCGGCACTACTGCTACTAGAGTTAGTGCAATGGATCAACAGCATAATAACCCTAATTATGATGAGGCTAAGTTGCACCAAAATTTGAGTGTAAATTTTGGAGGGTCTGATAAACTGACCTTGGATTTTCTTGGTGTTGGAGGCATGGTAAGAAACATGAATGGTGGCCATGGATACTCACAGAGAGATCGATCAACAACAACAACATCATGGCATCAATATGATCAACTCCTTAGACCCAGAGTTGAAGTCAACGCAGGCAAGTCAACTCTTTGGAGGCACTACACTACAGTGAGCCTGCTAGATCGAGGAACTAAAATTACATTCATGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008356 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051301 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-C2H2_6 zf-C2H2_jaz

Protein Analysis

138

Amino Acids

15.0

Weight (kDa)

9.15

Isoelectric Point (pI)

29.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03150
fragaria_vesca	FvH4_6g15680 FvH4_6g15680
malus_domestica	MD04G1100300.v1.1 MD12G1120300.v1.1
prunus_persica	Prupe.6G238500_v2.0.a1
pyrus_communis	pycom04g09530 pycom12g11920 pycom13g01050 pycom16g00930
rosa_chinensis	RchiOBHm_Chr3g0469381
rosa_laevigata	RLG00000024354
rosa_multiflora	Rmu_sc0013330.1_g000003 Rmu_sc0013330.1_g000004
rosa_roxburghii	Rroxscaffold_6G00411940
rosa_rugosa	Rorug03G0101300
rosa_samantha	Rh3AG150300 Rh3BG174000 Rh3CG165000 Rh3DG201400
rosa_wichuraiana	Rw3G014170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	42, 69, 81
AclWI	GGATC	2 cut(s)	60, 120
AcoI	YGGCCR	1 cut(s)	244
AcsI	RAATTY	2 cut(s)	160, 172
AgsI	TTSAA	1 cut(s)	326
AleI	CACNNNNGTG	1 cut(s)	368
AlwI	GGATC	2 cut(s)	60, 120
AoxI	GGCC	1 cut(s)	244
ApoI	RAATTY	2 cut(s)	160, 172
BalI	TGGCCA	1 cut(s)	246
BciVI	GTATCC	1 cut(s)	245
BclI	TGATCA	1 cut(s)	301
BfaI	CTAG	2 cut(s)	96, 380
BfmI	CTRYAG	1 cut(s)	366
BfuI	GTATCC	1 cut(s)	245
BisI	GCNGC	1 cut(s)	82
BlsI	GCNGC	1 cut(s)	83
BmsI	GCATC	1 cut(s)	301
Bsa29I	ATCGAT	1 cut(s)	268
BsaJI	CCNNGG	2 cut(s)	198, 247
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bse1I	ACTGG	1 cut(s)	54
Bse3DI	GCAATG	1 cut(s)	114
BseCI	ATCGAT	1 cut(s)	268
BseDI	CCNNGG	2 cut(s)	198, 247
BseMI	GCAATG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	54
BseRI	GAGGAG	1 cut(s)	16
BshFI	GGCC	1 cut(s)	246
BshVI	ATCGAT	1 cut(s)	268
BslFI	GGGAC	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	246
Bsp143I	GATC	6 cut(s)	52, 112, 265, 269, 301, 382
Bsp19I	CCATGG	1 cut(s)	247
BspACI	CCGC	3 cut(s)	42, 69, 81
BspANI	GGCC	1 cut(s)	246
BspDI	ATCGAT	1 cut(s)	268
BspPI	GGATC	2 cut(s)	60, 120
BsrDI	GCAATG	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	54
BssECI	CCNNGG	2 cut(s)	198, 247
BssMI	GATC	6 cut(s)	52, 112, 265, 269, 301, 382
BssT1I	CCWWGG	2 cut(s)	198, 247
Bst4CI	ACNGT	1 cut(s)	370
BstC8I	GCNNGC	2 cut(s)	337, 377
BstDEI	CTNAG	2 cut(s)	147, 311
BstDSI	CCRYGG	1 cut(s)	247
BstKTI	GATC	6 cut(s)	55, 115, 268, 272, 304, 385
BstMBI	GATC	6 cut(s)	52, 112, 265, 269, 301, 382
BstSFI	CTRYAG	1 cut(s)	366
Bsu15I	ATCGAT	1 cut(s)	268
BsuI	GTATCC	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	246
BsuTUI	ATCGAT	1 cut(s)	268
BtgI	CCRYGG	1 cut(s)	247
BtsIMutI	CAGTG	1 cut(s)	375
Cac8I	GCNNGC	2 cut(s)	337, 377
ClaI	ATCGAT	1 cut(s)	268
CviAII	CATG	5 cut(s)	223, 235, 248, 288, 406
CviJI	RGCY	3 cut(s)	146, 246, 375
CviKI_1	RGCY	3 cut(s)	146, 246, 375
DdeI	CTNAG	2 cut(s)	147, 311
DpnI	GATC	6 cut(s)	54, 114, 267, 271, 303, 384
DpnII	GATC	6 cut(s)	52, 112, 265, 269, 301, 382
EaeI	YGGCCR	1 cut(s)	244
Eco130I	CCWWGG	2 cut(s)	198, 247
EcoT14I	CCWWGG	2 cut(s)	198, 247
ErhI	CCWWGG	2 cut(s)	198, 247
FaeI	CATG	5 cut(s)	226, 238, 251, 291, 409
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	5 cut(s)	222, 234, 247, 287, 405
FauI	CCCGC	2 cut(s)	35, 62
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	1 cut(s)	82
Fsp4HI	GCNGC	1 cut(s)	82
FspBI	CTAG	2 cut(s)	96, 380
GluI	GCNGC	1 cut(s)	82
HaeIII	GGCC	1 cut(s)	246
Hin1II	CATG	5 cut(s)	226, 238, 251, 291, 409
HincII	GTYRAC	2 cut(s)	331, 345
HindII	GTYRAC	2 cut(s)	331, 345
Hpy166II	GTNNAC	2 cut(s)	331, 345
Hpy188I	TCNGA	2 cut(s)	38, 187
Hpy8I	GTNNAC	2 cut(s)	331, 345
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4V	TGCA	3 cut(s)	14, 107, 154
HpyF3I	CTNAG	2 cut(s)	147, 311
Hsp92II	CATG	5 cut(s)	226, 238, 251, 291, 409
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	6 cut(s)	52, 112, 265, 269, 301, 382
LpnPI	CCDG	4 cut(s)	35, 321, 331, 389
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	2 cut(s)	96, 380
MalI	GATC	6 cut(s)	54, 114, 267, 271, 303, 384
MboI	GATC	6 cut(s)	52, 112, 265, 269, 301, 382
MlsI	TGGCCA	1 cut(s)	246
MluCI	AATT	4 cut(s)	133, 160, 172, 396
MluNI	TGGCCA	1 cut(s)	246
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	7 cut(s)	32, 37, 136, 173, 212, 348, 380
Mox20I	TGGCCA	1 cut(s)	246
MscI	TGGCCA	1 cut(s)	246
MslI	CAYNNNNRTG	2 cut(s)	297, 368
Msp20I	TGGCCA	1 cut(s)	246
NcoI	CCATGG	1 cut(s)	247
NdeII	GATC	6 cut(s)	52, 112, 265, 269, 301, 382
NlaIII	CATG	5 cut(s)	226, 238, 251, 291, 409
OliI	CACNNNNGTG	1 cut(s)	368
PkrI	GCNGC	1 cut(s)	83
PsrI	GAACNNNNNNTAC	2 cut(s)	382, 414
RseI	CAYNNNNRTG	2 cut(s)	297, 368
SatI	GCNGC	1 cut(s)	82
Sau3AI	GATC	6 cut(s)	52, 112, 265, 269, 301, 382
SetI	ASST	1 cut(s)	200
SfaNI	GCATC	1 cut(s)	301
SfcI	CTRYAG	1 cut(s)	366
SmiMI	CAYNNNNRTG	2 cut(s)	297, 368
Sse9I	AATT	4 cut(s)	133, 160, 172, 396
SsiI	CCGC	3 cut(s)	42, 69, 81
SspMI	CTAG	2 cut(s)	96, 380
StyI	CCWWGG	2 cut(s)	198, 247
TaaI	ACNGT	1 cut(s)	370
TaqI	TCGA	3 cut(s)	29, 268, 385
TasI	AATT	4 cut(s)	133, 160, 172, 396
TauI	GCSGC	1 cut(s)	84
TscAI	CASTG	1 cut(s)	375
TspDTI	ATGAA	3 cut(s)	17, 251, 394
TspRI	CASTG	1 cut(s)	375
XapI	RAATTY	2 cut(s)	160, 172
XspI	CTAG	2 cut(s)	96, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.