Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009752

Physical Location & Seq

Genomic Coordinates Reverse (-)

23821247 .. 23824163

Gene Structure 2917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G238500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1641 bp

ATGCAAATGATGTCCGGTGATGGGTTTTCGATTATCCCTTCTGCCATTGATGGGTTTGCTCAAGAACATCAGCTGAATGCAAACCCTAGCAGCCAGAAACCCAATCCCAATAACCCTGTGGCCAAGAAGAAGAGAAATCTACCAGGAACACCAGATCCAGATGCTGAGGTTGTTGCTTTGTCTCCGACGACCCTAATGGCCACAAACCGATTCGTCTGCGAGATATGCAACAAGGGCTTCCAGAGAGACCAGAATTTACAGCTTCATCGGAGGGGCCACAACCTTCCATGGAAACTGAAGCAAAGATTGAACAAAGAGGTGAAGAAGAAGGTATATATTTGCCCTGAGAAGAGCTGCGTCCACCACGACCCGTCGAGAGCTCTCGGCGACCTCACCGGAATAAAGAAGCATTTCAGCAGAAAACACGGTGAGAAGAAGTGGAAGTGCGACAAGTGTTCGAAGAAATACGCAGTCCAATCGGATTGGAAAGCTCACTCCAAGACCTGTGGGACGAGGGAGTATAAGTGTGACTGTGGAACCCTCTTTTCCAGGAAAGATAGCTTCATCACCCACAGAGCTTTTTGTGATGCCCTAACTGAAGAGAGTGCTAGGCTCACTACTTCAGTTGCTGGAGCTGCAACCAATCTCAATTTCGGAAACGAAACAATGTTAAACAACACCATGATGCATAATGGTCATGCAGTTCAAGATGATGTGTCTCAAATTTCTCAGTATGGCCAAGGTTTGATCAGGCAAGATTTCAATGGATTGGATCATCGTCAGCAGCAGCATGAGAAGCCAAGCTTGTCACTTTGGCTGAATCAGCAGCAGGCAAATAGTAATTCTCATCAGCTGAATCTCATGGACAATATGGCAGCAAATCCCAATCAGCTTTATGTAACATCATCAAGCTCCACTGCTTTTCCAGAGATGGCTCAAATGCCACCAGCCAACAATCTCAATCAGCTCTTTGGCTCGCCAAACGCTATGTCTACTTTTGGAAGCTCAAACATCAATCTTTTTGGCTCAGGCAGTGCTTCAAGTTCTACTTCCACAAGTGCTGCAAATAATCTCTCCCTATCATCACCAATTCAAGAAGGTGGGATTCATAAGGGAAACAGTAATCTGGTAGGCAGCGGGGGCTTATCAAAGCCGCCTGCAGCCCCAATGTCTGCCACAGCACTTCTGCAAAAAGCAGCACAACTGGGTTCAACCAGAAGCAGCAGCAACAACAACAACAACAACCAAGGCAGCAGCAGCAGCAGCAGCTTGGGTGTAAACGTAATGAGCTCATCACCATCTTCTTCAAACACTTTGATCAGGAGCTTCAGCTCCAATATGAACCAAAATCGATCAAACGAGCTGCACCAAATTGTTCAAAATGCAAACCAATCAGGGGGTGGTGGTGCAAACTCAAACACAAGTTCTACTCTTGAGCAGCTCATGAACAACATCACTCATCGGGGTTCGAGCACAATTGGAAATCTTGATCATCAAAACAGTCTAACCAGAGACTTCTTGGGCATGGGAGGAGGAGGAGCAGCAGCAGATCAATTATCTCATAACAACAGGCCAATGTTCTCACCACAAGAGCTTGCCAAGTTTGCATCTTCAATGAGCCAATTCACTGGCAACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008356 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010075 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0030856 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0048364 GO:0048507 GO:0048509 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051301 GO:0051302 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-C2H2_jaz

Protein Analysis

547

Amino Acids

58.93

Weight (kDa)

9.33

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03150
fragaria_vesca	FvH4_6g15680 FvH4_6g15680
malus_domestica	MD04G1100300.v1.1 MD12G1120300.v1.1
prunus_persica	Prupe.6G238500_v2.0.a1
pyrus_communis	pycom04g09530 pycom12g11920 pycom13g01050 pycom16g00930
rosa_chinensis	RchiOBHm_Chr3g0469381
rosa_laevigata	RLG00000024354
rosa_multiflora	Rmu_sc0013330.1_g000003 Rmu_sc0013330.1_g000004
rosa_roxburghii	Rroxscaffold_6G00411940
rosa_rugosa	Rorug03G0101300
rosa_samantha	Rh3AG150300 Rh3BG174000 Rh3CG165000 Rh3DG201400
rosa_wichuraiana	Rw3G014170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	992
AciI	CCGC	2 cut(s)	1137, 1154
AclWI	GGATC	2 cut(s)	149, 780
AcoI	YGGCCR	3 cut(s)	120, 198, 736
AcsI	RAATTY	2 cut(s)	253, 723
AcuI	CTGAAG	4 cut(s)	317, 606, 618, 1312
AfiI	CCNNNNNNNGG	3 cut(s)	21, 51, 1396
AgsI	TTSAA	9 cut(s)	310, 707, 763, 1041, 1094, 1212, 1308, 1379, 1614
AjnI	CCWGG	2 cut(s)	142, 548
AjuI	GAANNNNNNNTTGG	2 cut(s)	635, 667
AloI	GAACNNNNNNTCC	2 cut(s)	139, 171
Alw21I	GWGCWC	3 cut(s)	382, 1292, 1475
Alw26I	GTCTC	4 cut(s)	186, 240, 723, 1506
AlwI	GGATC	2 cut(s)	149, 780
AlwNI	CAGNNNCTG	2 cut(s)	164, 629
AoxI	GGCC	5 cut(s)	120, 198, 274, 736, 1571
ApoI	RAATTY	2 cut(s)	253, 723
ArsI	GACNNNNNNTTYG	2 cut(s)	974, 1006
Asp700I	GAANNNNTTC	1 cut(s)	410
AspS9I	GGNCC	1 cut(s)	274
AsuHPI	GGTGA	8 cut(s)	29, 331, 385, 440, 559, 1077, 1287, 1575
AsuII	TTCGAA	1 cut(s)	458
BalI	TGGCCA	3 cut(s)	122, 200, 738
BanII	GRGCYC	2 cut(s)	382, 1292
Bbv12I	GWGCWC	3 cut(s)	382, 1292, 1475
BbvCI	CCTCAGC	1 cut(s)	165
BccI	CCATC	4 cut(s)	14, 44, 925, 1306
BcgI	CGANNNNNNTGC	4 cut(s)	198, 232, 459, 493
BciT130I	CCWGG	2 cut(s)	144, 550
BclI	TGATCA	3 cut(s)	747, 1317, 1489
BcoDI	GTCTC	4 cut(s)	186, 240, 723, 1506
BfaI	CTAG	3 cut(s)	87, 609, 1639
BfmI	CTRYAG	1 cut(s)	1158
Bme1390I	CCNGG	2 cut(s)	144, 550
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	2 cut(s)	275, 538
BmrFI	CCNGG	2 cut(s)	144, 550
BmrI	ACTGGG	1 cut(s)	1214
BmsI	GCATC	4 cut(s)	151, 577, 675, 1616
BmuI	ACTGGG	1 cut(s)	1214
BpmI	CTGGAG	1 cut(s)	651
Bpu10I	CCTNAGC	2 cut(s)	165, 1027
Bpu14I	TTCGAA	1 cut(s)	458
BpuEI	CTTGAG	2 cut(s)	45, 1454
Bsa29I	ATCGAT	1 cut(s)	1351
BsaI	GGTCTC	1 cut(s)	240
BsaJI	CCNNGG	3 cut(s)	287, 739, 1246
BsaWI	WCCGGW	2 cut(s)	14, 395
BsaXI	ACNNNNNCTCC	2 cut(s)	509, 539
Bsc4I	CCNNNNNNNGG	3 cut(s)	21, 51, 1396
Bse1I	ACTGG	2 cut(s)	1209, 1633
BseBI	CCWGG	2 cut(s)	144, 550
BseCI	ATCGAT	1 cut(s)	1351
BseDI	CCNNGG	3 cut(s)	287, 739, 1246
BseLI	CCNNNNNNNGG	3 cut(s)	21, 51, 1396
BseMII	CTCAG	4 cut(s)	156, 336, 743, 1041
BseNI	ACTGG	2 cut(s)	1209, 1633
BseRI	GAGGAG	3 cut(s)	1545, 1548, 1551
BsgI	GTGCAG	1 cut(s)	1349
BshFI	GGCC	5 cut(s)	122, 200, 276, 738, 1573
BshVI	ATCGAT	1 cut(s)	1351
BsiHKAI	GWGCWC	3 cut(s)	382, 1292, 1475
BsiSI	CCGG	2 cut(s)	15, 396
BslFI	GGGAC	1 cut(s)	523
BslI	CCNNNNNNNGG	3 cut(s)	21, 51, 1396
BsmAI	GTCTC	4 cut(s)	186, 240, 723, 1506
BsmFI	GGGAC	1 cut(s)	523
BsmI	GAATGC	1 cut(s)	82
BsnI	GGCC	5 cut(s)	122, 200, 276, 738, 1573
Bso31I	GGTCTC	1 cut(s)	240
Bsp119I	TTCGAA	1 cut(s)	458
Bsp1286I	GDGCHC	3 cut(s)	382, 1292, 1475
Bsp143I	GATC	7 cut(s)	154, 747, 772, 1317, 1352, 1489, 1549
Bsp19I	CCATGG	1 cut(s)	287
BspACI	CCGC	2 cut(s)	1137, 1154
BspANI	GGCC	5 cut(s)	122, 200, 276, 738, 1573
BspCNI	CTCAG	4 cut(s)	157, 337, 742, 1040
BspDI	ATCGAT	1 cut(s)	1351
BspHI	TCATGA	1 cut(s)	1443
BspLI	GGNNCC	2 cut(s)	275, 538
BspMAI	CTGCAG	1 cut(s)	1162
BspPI	GGATC	2 cut(s)	149, 780
BspQI	GCTCTTC	1 cut(s)	344
BspT104I	TTCGAA	1 cut(s)	458
BspTNI	GGTCTC	1 cut(s)	240
BsrI	ACTGG	2 cut(s)	1209, 1633
BssECI	CCNNGG	3 cut(s)	287, 739, 1246
BssMI	GATC	7 cut(s)	154, 747, 772, 1317, 1352, 1489, 1549
BssT1I	CCWWGG	3 cut(s)	287, 739, 1246
Bst2UI	CCWGG	2 cut(s)	144, 550
Bst4CI	ACNGT	4 cut(s)	428, 533, 1121, 1502
Bst6I	CTCTTC	3 cut(s)	125, 344, 594
BstBI	TTCGAA	1 cut(s)	458
BstC8I	GCNNGC	4 cut(s)	831, 977, 1158, 1596
BstDEI	CTNAG	4 cut(s)	165, 345, 729, 1027
BstDSI	CCRYGG	1 cut(s)	287
BstKTI	GATC	7 cut(s)	157, 750, 775, 1320, 1355, 1492, 1552
BstMAI	GTCTC	4 cut(s)	186, 240, 723, 1506
BstMBI	GATC	7 cut(s)	154, 747, 772, 1317, 1352, 1489, 1549
BstNI	CCWGG	2 cut(s)	144, 550
BstSCI	CCNGG	2 cut(s)	142, 548
BstSFI	CTRYAG	1 cut(s)	1158
BstX2I	RGATCY	1 cut(s)	154
BstXI	CCANNNNNNTGG	1 cut(s)	1628
BstYI	RGATCY	1 cut(s)	154
Bsu15I	ATCGAT	1 cut(s)	1351
BsuRI	GGCC	5 cut(s)	122, 200, 276, 738, 1573
BsuTUI	ATCGAT	1 cut(s)	1351
BtgI	CCRYGG	1 cut(s)	287
BtsI	GCAGTG	2 cut(s)	915, 1039
BtsIMutI	CAGTG	3 cut(s)	915, 1039, 1626
Cac8I	GCNNGC	4 cut(s)	831, 977, 1158, 1596
CaiI	CAGNNNCTG	2 cut(s)	164, 629
CciI	TCATGA	1 cut(s)	1443
Cfr13I	GGNCC	1 cut(s)	274
ClaI	ATCGAT	1 cut(s)	1351
CseI	GACGC	1 cut(s)	346
CspCI	CAANNNNNGTGG	2 cut(s)	487, 522
CviAII	CATG	7 cut(s)	288, 682, 698, 791, 862, 1444, 1525
DdeI	CTNAG	4 cut(s)	165, 345, 729, 1027
DpnI	GATC	7 cut(s)	156, 749, 774, 1319, 1354, 1491, 1551
DpnII	GATC	7 cut(s)	154, 747, 772, 1317, 1352, 1489, 1549
EaeI	YGGCCR	3 cut(s)	120, 198, 736
Eam1104I	CTCTTC	3 cut(s)	125, 344, 594
EarI	CTCTTC	3 cut(s)	125, 344, 594
Ecl136II	GAGCTC	2 cut(s)	380, 1290
Eco130I	CCWWGG	3 cut(s)	287, 739, 1246
Eco24I	GRGCYC	2 cut(s)	382, 1292
Eco31I	GGTCTC	1 cut(s)	240
Eco53kI	GAGCTC	2 cut(s)	380, 1290
Eco57I	CTGAAG	4 cut(s)	317, 606, 618, 1312
EcoICRI	GAGCTC	2 cut(s)	380, 1290
EcoRII	CCWGG	2 cut(s)	142, 548
EcoT14I	CCWWGG	3 cut(s)	287, 739, 1246
EcoT22I	ATGCAT	1 cut(s)	690
EcoT38I	GRGCYC	2 cut(s)	382, 1292
ErhI	CCWWGG	3 cut(s)	287, 739, 1246
FaeI	CATG	7 cut(s)	291, 685, 701, 794, 865, 1447, 1528
FalI	AAGNNNNNCTT	4 cut(s)	788, 820, 1033, 1065
FaqI	GGGAC	1 cut(s)	523
FatI	CATG	7 cut(s)	287, 681, 697, 790, 861, 1443, 1524
FauI	CCCGC	1 cut(s)	1130
FbaI	TGATCA	3 cut(s)	747, 1317, 1489
FblI	GTMKAC	1 cut(s)	992
FriOI	GRGCYC	2 cut(s)	382, 1292
FspBI	CTAG	3 cut(s)	87, 609, 1639
GsuI	CTGGAG	1 cut(s)	651
HaeIII	GGCC	5 cut(s)	122, 200, 276, 738, 1573
HapII	CCGG	2 cut(s)	15, 396
HgaI	GACGC	1 cut(s)	346
Hin1II	CATG	7 cut(s)	291, 685, 701, 794, 865, 1447, 1528
HindIII	AAGCTT	1 cut(s)	802
HinfI	GANTC	4 cut(s)	210, 820, 856, 1105
HpaII	CCGG	2 cut(s)	15, 396
HphI	GGTGA	8 cut(s)	29, 331, 385, 440, 559, 1077, 1287, 1575
Hpy166II	GTNNAC	3 cut(s)	361, 993, 1279
Hpy188I	TCNGA	4 cut(s)	186, 270, 481, 656
Hpy8I	GTNNAC	3 cut(s)	361, 993, 1279
Hpy99I	CGWCG	2 cut(s)	190, 376
HpyAV	CCTTC	4 cut(s)	48, 293, 322, 1091
HpyCH4III	ACNGT	4 cut(s)	428, 533, 1121, 1502
HpyCH4IV	ACGT	1 cut(s)	1281
HpyF3I	CTNAG	4 cut(s)	165, 345, 729, 1027
HpySE526I	ACGT	1 cut(s)	1281
Hsp92II	CATG	7 cut(s)	291, 685, 701, 794, 865, 1447, 1528
Ksp22I	TGATCA	3 cut(s)	747, 1317, 1489
Kzo9I	GATC	7 cut(s)	154, 747, 772, 1317, 1352, 1489, 1549
LguI	GCTCTTC	1 cut(s)	344
LmnI	GCTCC	5 cut(s)	632, 917, 1323, 1337, 1538
LweI	GCATC	4 cut(s)	151, 577, 675, 1616
MaeI	CTAG	3 cut(s)	87, 609, 1639
MaeII	ACGT	1 cut(s)	1281
MaeIII	GTNAC	3 cut(s)	527, 807, 898
MalI	GATC	7 cut(s)	156, 749, 774, 1319, 1354, 1491, 1551
MboI	GATC	7 cut(s)	154, 747, 772, 1317, 1352, 1489, 1549
MfeI	CAATTG	1 cut(s)	1476
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	3 cut(s)	382, 1292, 1475
MlsI	TGGCCA	3 cut(s)	122, 200, 738
MluCI	AATT	9 cut(s)	253, 649, 723, 841, 1089, 1371, 1476, 1553, 1622
MluNI	TGGCCA	3 cut(s)	122, 200, 738
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	9 cut(s)	160, 264, 310, 401, 507, 551, 1523, 1526, 1529
Mox20I	TGGCCA	3 cut(s)	122, 200, 738
Mph1103I	ATGCAT	1 cut(s)	690
MroXI	GAANNNNTTC	1 cut(s)	410
MscI	TGGCCA	3 cut(s)	122, 200, 738
MseI	TTAA	1 cut(s)	671
MslI	CAYNNNNRTG	1 cut(s)	683
Msp20I	TGGCCA	3 cut(s)	122, 200, 738
MspA1I	CMGCKG	3 cut(s)	73, 853, 1137
MspI	CCGG	2 cut(s)	15, 396
MspR9I	CCNGG	2 cut(s)	144, 550
MunI	CAATTG	1 cut(s)	1476
Mva1269I	GAATGC	1 cut(s)	82
MvaI	CCWGG	2 cut(s)	144, 550
NcoI	CCATGG	1 cut(s)	287
NdeII	GATC	7 cut(s)	154, 747, 772, 1317, 1352, 1489, 1549
NlaIII	CATG	7 cut(s)	291, 685, 701, 794, 865, 1447, 1528
NlaIV	GGNNCC	2 cut(s)	275, 538
NmeAIII	GCCGAG	1 cut(s)	363
NmuCI	GTSAC	2 cut(s)	527, 807
NsiI	ATGCAT	1 cut(s)	690
NspV	TTCGAA	1 cut(s)	458
PagI	TCATGA	1 cut(s)	1443
PciSI	GCTCTTC	1 cut(s)	344
PctI	GAATGC	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	410
PfeI	GAWTC	4 cut(s)	210, 820, 856, 1105
PfoI	TCCNGGA	1 cut(s)	548
Psp124BI	GAGCTC	2 cut(s)	382, 1292
Psp6I	CCWGG	2 cut(s)	142, 548
PspGI	CCWGG	2 cut(s)	142, 548
PspN4I	GGNNCC	2 cut(s)	275, 538
PspPI	GGNCC	1 cut(s)	274
PstI	CTGCAG	1 cut(s)	1162
PstNI	CAGNNNCTG	2 cut(s)	164, 629
PsuI	RGATCY	1 cut(s)	154
PvuII	CAGCTG	2 cut(s)	73, 853
RseI	CAYNNNNRTG	1 cut(s)	683
SacI	GAGCTC	2 cut(s)	382, 1292
SapI	GCTCTTC	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	671
Sau3AI	GATC	7 cut(s)	154, 747, 772, 1317, 1352, 1489, 1549
Sau96I	GGNCC	1 cut(s)	274
ScrFI	CCNGG	2 cut(s)	144, 550
SduI	GDGCHC	3 cut(s)	382, 1292, 1475
SfaNI	GCATC	4 cut(s)	151, 577, 675, 1616
SfcI	CTRYAG	1 cut(s)	1158
SfuI	TTCGAA	1 cut(s)	458
SmiMI	CAYNNNNRTG	1 cut(s)	683
SmlI	CTYRAG	2 cut(s)	60, 1433
SmoI	CTYRAG	2 cut(s)	60, 1433
Sse9I	AATT	9 cut(s)	253, 649, 723, 841, 1089, 1371, 1476, 1553, 1622
SsiI	CCGC	2 cut(s)	1137, 1154
SspMI	CTAG	3 cut(s)	87, 609, 1639
SstI	GAGCTC	2 cut(s)	382, 1292
StyD4I	CCNGG	2 cut(s)	142, 548
StyI	CCWWGG	3 cut(s)	287, 739, 1246
TaaI	ACNGT	4 cut(s)	428, 533, 1121, 1502
TaiI	ACGT	1 cut(s)	1284
TaqI	TCGA	5 cut(s)	29, 374, 458, 1351, 1469
TasI	AATT	9 cut(s)	253, 649, 723, 841, 1089, 1371, 1476, 1553, 1622
TauI	GCSGC	1 cut(s)	1156
TfiI	GAWTC	4 cut(s)	210, 820, 856, 1105
Tru1I	TTAA	1 cut(s)	671
Tru9I	TTAA	1 cut(s)	671
TscAI	CASTG	3 cut(s)	922, 1039, 1633
TseFI	GTSAC	2 cut(s)	527, 807
Tsp45I	GTSAC	2 cut(s)	527, 807
TspDTI	ATGAA	5 cut(s)	254, 553, 1097, 1355, 1460
TspRI	CASTG	3 cut(s)	922, 1039, 1633
XapI	RAATTY	2 cut(s)	253, 723
XcmI	CCANNNNNNNNNTGG	3 cut(s)	115, 1397, 1516
XmiI	GTMKAC	1 cut(s)	992
XmnI	GAANNNNTTC	1 cut(s)	410
XspI	CTAG	3 cut(s)	87, 609, 1639
Zsp2I	ATGCAT	1 cut(s)	690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.