Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0009752

Physical Location & Seq

Genomic Coordinates Reverse (-)

18538743 .. 18541817

Gene Structure 3075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1100300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGGCAACAAACCGGTTCGTCTGCGAAATATGCAACAAGGGTTTCCAGAGAGACCAGAATTTGCAGCTTCACAGAAGGGGTCACAACCTTCCCTGGAAGCTCAAGCAGCGACTGAACAAGGAGGTGAAGAAGAAGGTTTATATTTGCCCCGAGAAGACCTGCGTCCACCATGACCCGTCGAGAGCTCTTGGAGACCTCACCGGAATAAAGAAGCATTTCAGCAGAAAACATGGAGAGAAAAAGTGGAAGTGTGAGAAGTGTTCGAAGAAATATGCTGTCCAATCGGATTGGAAAGCTCACTCCAAGACCTGTGGGACTAGAGAGTACAAGTGTGACTGTGGAACCCTCTTTTCCAGGAAAGATAGCTTCATCACACACAGAGCATTTTGTGATGCCCTAACTGAAGAGAGTGCTAGGCTCACTACTTCATCAGTTACTGGAGTTCATACAAATCTCAACTTTGGAAATGATGCAATGTTAAACAATCCAATGATGAACAATAGTCAAGCAGTAGTTCAAGATGCGTCTCAAATTTCCATGCAGTATGGGCAAGGTTTGATGAGGCAAGATTTCAATGGCTTAGATCAGCTTCATCAACATGAGAAGCCAAGATTATCACTTTGGTTGAATCAGCAGGCAACCAGTAATTCTAATCAGGTTAATCTGATAGATGATATGCAAGCAAATCCTAATCATCCGCTTTATGTAACATCATCAAGCTCTAATGCTTTTCCTGAAATGGTGCAAATGCCATCGTCTTCCAACAATGTCAATCTTTTTGGCTCATCTAATTCCATGCCAACTTTTGGAGCTTCAACAAATGGTGCAAATCTCTCTTTGTCACCGGGTCAAGAAAGCGGGACTAGTAAGCTCATTGGGAAAAATAGTAATTTGGTGGGCAGCGGCGTGTCCAAGCCACCGGCTGCCCCAATGTCAGCCACAGCACTTTTACAAAAAGCAGCTCAATTGGGTTCGACTAGAAGCAGCAACAACCAAGGCAGCAGCTTGGGTGTAAATGTAATGTCCTCATCATCTTCTTCCAGGGGCTTCTCGAATTTGAACCAAAATCGATCGAACGAGCTTCATCAAGTTGTACAAAATGCACATCAATCAGGTGGTGGTAGTGCAAATTTGAGTTCATTAACAAGTTCATCATCAAATACCAGTGCTACTACACTTGAGCAGCTAATGAATACTATTCAACGGGGTCCGAGCAATATCGGAAGTATTGATCATCAAAACAGTCTAACTAGGGACTTTTTGGGCATGGGAGGAGCAGGAGGAGGAGAACATATTGATCAGTTATCCCATACCAATAGGCAAATATTTTTTCCACAAGATCTAGCCAAGTTTGCATCTTCAATGAGCCAATTCACTCGCAACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008356 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010075 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0030856 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045595 GO:0045604 GO:0045682 GO:0048364 GO:0048507 GO:0048509 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051301 GO:0051302 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-C2H2_jaz

Protein Analysis

463

Amino Acids

50.46

Weight (kDa)

9.48

Isoelectric Point (pI)

40.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2H2-2nd_BIRD-IDD	PF22996	43 - 77	7.6e-22	BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD	PF22995	81 - 105	1.2e-14	BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD	PF22992	108 - 146	4.7e-24	BIRD-IDD transcription factor, fourth C2HC zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009752)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03150
fragaria_vesca	FvH4_6g15680 FvH4_6g15680
malus_domestica	MD04G1100300.v1.1 MD12G1120300.v1.1
prunus_persica	Prupe.6G238500_v2.0.a1
pyrus_communis	pycom04g09530 pycom12g11920 pycom13g01050 pycom16g00930
rosa_chinensis	RchiOBHm_Chr3g0469381
rosa_laevigata	RLG00000024354
rosa_multiflora	Rmu_sc0013330.1_g000003 Rmu_sc0013330.1_g000004
rosa_roxburghii	Rroxscaffold_6G00411940
rosa_rugosa	Rorug03G0101300
rosa_samantha	Rh3AG150300 Rh3BG174000 Rh3CG165000 Rh3DG201400
rosa_wichuraiana	Rw3G014170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	167
AccB7I	CCANNNNNTGG	1 cut(s)	806
AciI	CCGC	3 cut(s)	698, 858, 903
AcsI	RAATTY	4 cut(s)	58, 531, 1054, 1129
AcuI	CTGAAG	1 cut(s)	423
AfaI	GTAC	2 cut(s)	326, 1095
AfiI	CCNNNNNNNGG	1 cut(s)	806
AgeI	ACCGGT	1 cut(s)	12
AgsI	TTSAA	7 cut(s)	518, 574, 628, 816, 1060, 1202, 1362
AhlI	ACTAGT	1 cut(s)	863
AjnI	CCWGG	3 cut(s)	92, 353, 1040
Alw21I	GWGCWC	1 cut(s)	187
Alw26I	GTCTC	3 cut(s)	45, 186, 531
AlwNI	CAGNNNCTG	2 cut(s)	112, 437
Ama87I	CYCGRG	1 cut(s)	149
ApeKI	GCWGC	9 cut(s)	64, 106, 900, 923, 959, 984, 999, 1002, 1183
ApoI	RAATTY	4 cut(s)	58, 531, 1054, 1129
AsiGI	ACCGGT	1 cut(s)	12
Asp700I	GAANNNNTTC	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	1208
AsuC2I	CCSGG	1 cut(s)	846
AsuHPI	GGTGA	3 cut(s)	136, 190, 834
AsuII	TTCGAA	1 cut(s)	263
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	1208
BanII	GRGCYC	1 cut(s)	187
BbsI	GAAGAC	2 cut(s)	161, 750
Bbv12I	GWGCWC	1 cut(s)	187
BbvI	GCAGC	9 cut(s)	76, 118, 910, 912, 971, 996, 1011, 1014, 1195
BccI	CCATC	1 cut(s)	760
BciT130I	CCWGG	3 cut(s)	94, 355, 1042
BclI	TGATCA	2 cut(s)	1231, 1297
BcnI	CCSGG	1 cut(s)	846
BcoDI	GTCTC	3 cut(s)	45, 186, 531
BcuI	ACTAGT	1 cut(s)	863
BfaI	CTAG	7 cut(s)	318, 414, 864, 978, 1251, 1343, 1387
BfuAI	ACCTGC	1 cut(s)	167
BglII	AGATCT	1 cut(s)	1339
Bme1390I	CCNGG	4 cut(s)	94, 355, 846, 1042
Bme18I	GGWCC	1 cut(s)	1208
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	1208
BmiI	GGNNCC	2 cut(s)	343, 1209
BmrFI	CCNGG	4 cut(s)	94, 355, 846, 1042
BmsI	GCATC	4 cut(s)	382, 460, 511, 1364
BoxI	GACNNNNGTC	1 cut(s)	161
BpiI	GAAGAC	2 cut(s)	161, 750
BpmI	CTGGAG	1 cut(s)	459
Bpu14I	TTCGAA	1 cut(s)	263
BpuEI	CTTGAG	2 cut(s)	86, 1199
BpuMI	CCSGG	1 cut(s)	846
Bsa29I	ATCGAT	1 cut(s)	1069
BsaI	GGTCTC	2 cut(s)	45, 186
BsaJI	CCNNGG	3 cut(s)	92, 994, 1041
BsaWI	WCCGGW	2 cut(s)	12, 200
Bsc4I	CCNNNNNNNGG	1 cut(s)	806
Bse118I	RCCGGY	2 cut(s)	12, 919
Bse1I	ACTGG	3 cut(s)	442, 642, 1164
Bse3DI	GCAATG	1 cut(s)	480
BseBI	CCWGG	3 cut(s)	94, 355, 1042
BseCI	ATCGAT	1 cut(s)	1069
BseDI	CCNNGG	3 cut(s)	92, 994, 1041
BseGI	GGATG	1 cut(s)	694
BseLI	CCNNNNNNNGG	1 cut(s)	806
BseMI	GCAATG	1 cut(s)	480
BseNI	ACTGG	3 cut(s)	442, 642, 1164
BseRI	GAGGAG	3 cut(s)	1287, 1296, 1299
BseXI	GCAGC	9 cut(s)	76, 118, 910, 912, 971, 996, 1011, 1014, 1195
Bsh1285I	CGRYCG	1 cut(s)	1073
BshTI	ACCGGT	1 cut(s)	12
BshVI	ATCGAT	1 cut(s)	1069
BsiEI	CGRYCG	1 cut(s)	1073
BsiHKAI	GWGCWC	1 cut(s)	187
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	4 cut(s)	13, 201, 845, 920
BslFI	GGGAC	3 cut(s)	328, 874, 1268
BslI	CCNNNNNNNGG	1 cut(s)	806
BsmAI	GTCTC	3 cut(s)	45, 186, 531
BsmBI	CGTCTC	1 cut(s)	531
BsmFI	GGGAC	3 cut(s)	328, 874, 1268
Bso31I	GGTCTC	2 cut(s)	45, 186
BsoBI	CYCGRG	1 cut(s)	149
Bsp119I	TTCGAA	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp1407I	TGTACA	1 cut(s)	1093
Bsp143I	GATC	5 cut(s)	583, 1070, 1231, 1297, 1339
BspACI	CCGC	3 cut(s)	698, 858, 903
BspDI	ATCGAT	1 cut(s)	1069
BspLI	GGNNCC	2 cut(s)	343, 1209
BspMI	ACCTGC	1 cut(s)	167
BspT104I	TTCGAA	1 cut(s)	263
BspTNI	GGTCTC	2 cut(s)	45, 186
BsrDI	GCAATG	1 cut(s)	480
BsrFI	RCCGGY	2 cut(s)	12, 919
BsrGI	TGTACA	1 cut(s)	1093
BsrI	ACTGG	3 cut(s)	442, 642, 1164
BssAI	RCCGGY	2 cut(s)	12, 919
BssECI	CCNNGG	3 cut(s)	92, 994, 1041
BssMI	GATC	5 cut(s)	583, 1070, 1231, 1297, 1339
BssT1I	CCWWGG	1 cut(s)	994
Bst2UI	CCWGG	3 cut(s)	94, 355, 1042
Bst4CI	ACNGT	2 cut(s)	338, 1244
Bst6I	CTCTTC	1 cut(s)	399
BstAUI	TGTACA	1 cut(s)	1093
BstBI	TTCGAA	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	636, 681
BstDEI	CTNAG	1 cut(s)	580
BstF5I	GGATG	1 cut(s)	694
BstKTI	GATC	5 cut(s)	586, 1073, 1234, 1300, 1342
BstMAI	GTCTC	3 cut(s)	45, 186, 531
BstMBI	GATC	5 cut(s)	583, 1070, 1231, 1297, 1339
BstMCI	CGRYCG	1 cut(s)	1073
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 106, 547, 1352
BstNI	CCWGG	3 cut(s)	94, 355, 1042
BstPAI	GACNNNNGTC	1 cut(s)	161
BstSCI	CCNGG	4 cut(s)	92, 353, 844, 1040
BstV1I	GCAGC	9 cut(s)	76, 118, 910, 912, 971, 996, 1011, 1014, 1195
BstV2I	GAAGAC	2 cut(s)	161, 750
BstX2I	RGATCY	1 cut(s)	1339
BstYI	RGATCY	1 cut(s)	1339
Bsu15I	ATCGAT	1 cut(s)	1069
BsuTUI	ATCGAT	1 cut(s)	1069
BtsCI	GGATG	1 cut(s)	694
BtsIMutI	CAGTG	1 cut(s)	1171
BveI	ACCTGC	1 cut(s)	167
Cac8I	GCNNGC	2 cut(s)	636, 681
CaiI	CAGNNNCTG	2 cut(s)	112, 437
Cfr10I	RCCGGY	2 cut(s)	12, 919
Cfr13I	GGNCC	1 cut(s)	1208
ClaI	ATCGAT	1 cut(s)	1069
CseI	GACGC	2 cut(s)	151, 513
Csp6I	GTAC	2 cut(s)	325, 1094
CspAI	ACCGGT	1 cut(s)	12
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CviAII	CATG	6 cut(s)	170, 230, 538, 599, 796, 1267
CviQI	GTAC	2 cut(s)	325, 1094
DdeI	CTNAG	1 cut(s)	580
DpnI	GATC	5 cut(s)	585, 1072, 1233, 1299, 1341
DpnII	GATC	5 cut(s)	583, 1070, 1231, 1297, 1339
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Ecl136II	GAGCTC	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	994
Eco24I	GRGCYC	1 cut(s)	187
Eco31I	GGTCTC	2 cut(s)	45, 186
Eco47I	GGWCC	1 cut(s)	1208
Eco53kI	GAGCTC	1 cut(s)	185
Eco57I	CTGAAG	1 cut(s)	423
Eco88I	CYCGRG	1 cut(s)	149
EcoICRI	GAGCTC	1 cut(s)	185
EcoRII	CCWGG	3 cut(s)	92, 353, 1040
EcoT14I	CCWWGG	1 cut(s)	994
EcoT38I	GRGCYC	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	994
Esp3I	CGTCTC	1 cut(s)	531
FaeI	CATG	6 cut(s)	173, 233, 541, 602, 799, 1270
FaqI	GGGAC	3 cut(s)	328, 874, 1268
FatI	CATG	6 cut(s)	169, 229, 537, 598, 795, 1266
FauI	CCCGC	1 cut(s)	851
FbaI	TGATCA	2 cut(s)	1231, 1297
FokI	GGATG	1 cut(s)	681
FriOI	GRGCYC	1 cut(s)	187
FspBI	CTAG	7 cut(s)	318, 414, 864, 978, 1251, 1343, 1387
GsuI	CTGGAG	1 cut(s)	459
HapII	CCGG	4 cut(s)	13, 201, 845, 920
HgaI	GACGC	2 cut(s)	151, 513
Hin1II	CATG	6 cut(s)	173, 233, 541, 602, 799, 1270
HinfI	GANTC	1 cut(s)	628
HpaII	CCGG	4 cut(s)	13, 201, 845, 920
HphI	GGTGA	3 cut(s)	136, 190, 834
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	4 cut(s)	286, 666, 1212, 1223
Hpy188III	TCNNGA	6 cut(s)	46, 180, 518, 734, 851, 1051
Hpy8I	GTNNAC	1 cut(s)	166
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	3 cut(s)	69, 98, 127
HpyCH4III	ACNGT	2 cut(s)	338, 1244
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 106, 547, 1352
HpyF3I	CTNAG	1 cut(s)	580
Hsp92II	CATG	6 cut(s)	173, 233, 541, 602, 799, 1270
Ksp22I	TGATCA	2 cut(s)	1231, 1297
Kzo9I	GATC	5 cut(s)	583, 1070, 1231, 1297, 1339
LmnI	GCTCC	2 cut(s)	809, 1274
Lsp1109I	GCAGC	9 cut(s)	76, 118, 910, 912, 971, 996, 1011, 1014, 1195
LweI	GCATC	4 cut(s)	382, 460, 511, 1364
MaeI	CTAG	7 cut(s)	318, 414, 864, 978, 1251, 1343, 1387
MaeIII	GTNAC	5 cut(s)	80, 332, 433, 706, 840
MalI	GATC	5 cut(s)	585, 1072, 1233, 1299, 1341
MboI	GATC	5 cut(s)	583, 1070, 1231, 1297, 1339
MboII	GAAGA	9 cut(s)	139, 142, 166, 277, 416, 750, 1026, 1029, 1350
MfeI	CAATTG	1 cut(s)	965
MflI	RGATCY	1 cut(s)	1339
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	9 cut(s)	58, 531, 646, 790, 889, 965, 1054, 1129, 1370
MmeI	TCCRAC	1 cut(s)	786
MnlI	CCTC	8 cut(s)	115, 206, 356, 555, 1036, 1265, 1274, 1277
MroXI	GAANNNNTTC	1 cut(s)	215
MseI	TTAA	3 cut(s)	479, 660, 1142
MslI	CAYNNNNRTG	1 cut(s)	597
MspA1I	CMGCKG	1 cut(s)	903
MspI	CCGG	4 cut(s)	13, 201, 845, 920
MspR9I	CCNGG	4 cut(s)	94, 355, 846, 1042
MunI	CAATTG	1 cut(s)	965
MvaI	CCWGG	3 cut(s)	94, 355, 1042
MwoI	GCNNNNNNNGC	4 cut(s)	30, 106, 547, 1352
NciI	CCSGG	1 cut(s)	846
NdeII	GATC	5 cut(s)	583, 1070, 1231, 1297, 1339
NlaIII	CATG	6 cut(s)	173, 233, 541, 602, 799, 1270
NlaIV	GGNNCC	2 cut(s)	343, 1209
NmuCI	GTSAC	3 cut(s)	80, 332, 840
NspV	TTCGAA	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	628
PflMI	CCANNNNNTGG	1 cut(s)	806
PfoI	TCCNGGA	1 cut(s)	353
PinAI	ACCGGT	1 cut(s)	12
Ple19I	CGATCG	1 cut(s)	1073
PshAI	GACNNNNGTC	1 cut(s)	161
Psp124BI	GAGCTC	1 cut(s)	187
Psp6I	CCWGG	3 cut(s)	92, 353, 1040
PspGI	CCWGG	3 cut(s)	92, 353, 1040
PspN4I	GGNNCC	2 cut(s)	343, 1209
PspPI	GGNCC	1 cut(s)	1208
PstNI	CAGNNNCTG	2 cut(s)	112, 437
PsuI	RGATCY	1 cut(s)	1339
PvuI	CGATCG	1 cut(s)	1073
RsaI	GTAC	2 cut(s)	326, 1095
RsaNI	GTAC	2 cut(s)	325, 1094
RseI	CAYNNNNRTG	1 cut(s)	597
SacI	GAGCTC	1 cut(s)	187
SaqAI	TTAA	3 cut(s)	479, 660, 1142
Sau3AI	GATC	5 cut(s)	583, 1070, 1231, 1297, 1339
Sau96I	GGNCC	1 cut(s)	1208
ScrFI	CCNGG	4 cut(s)	94, 355, 846, 1042
SduI	GDGCHC	1 cut(s)	187
SfaNI	GCATC	4 cut(s)	382, 460, 511, 1364
SfuI	TTCGAA	1 cut(s)	263
SinI	GGWCC	1 cut(s)	1208
SmiMI	CAYNNNNRTG	1 cut(s)	597
SmlI	CTYRAG	2 cut(s)	101, 1178
SmoI	CTYRAG	2 cut(s)	101, 1178
SpeI	ACTAGT	1 cut(s)	863
Sse9I	AATT	9 cut(s)	58, 531, 646, 790, 889, 965, 1054, 1129, 1370
SsiI	CCGC	3 cut(s)	698, 858, 903
SspI	AATATT	1 cut(s)	1326
SspMI	CTAG	7 cut(s)	318, 414, 864, 978, 1251, 1343, 1387
SstI	GAGCTC	1 cut(s)	187
StyD4I	CCNGG	4 cut(s)	92, 353, 844, 1040
StyI	CCWWGG	1 cut(s)	994
TaaI	ACNGT	2 cut(s)	338, 1244
TaqI	TCGA	6 cut(s)	179, 263, 974, 1052, 1069, 1073
TasI	AATT	9 cut(s)	58, 531, 646, 790, 889, 965, 1054, 1129, 1370
TatI	WGTACW	2 cut(s)	324, 1093
TauI	GCSGC	1 cut(s)	906
TfiI	GAWTC	1 cut(s)	628
Tru1I	TTAA	3 cut(s)	479, 660, 1142
Tru9I	TTAA	3 cut(s)	479, 660, 1142
TscAI	CASTG	1 cut(s)	1171
TseFI	GTSAC	3 cut(s)	80, 332, 840
TseI	GCWGC	9 cut(s)	64, 106, 900, 923, 959, 984, 999, 1002, 1183
Tsp45I	GTSAC	3 cut(s)	80, 332, 840
TspDTI	ATGAA	9 cut(s)	358, 417, 434, 509, 581, 1073, 1128, 1140, 1205
TspRI	CASTG	1 cut(s)	1171
Van91I	CCANNNNNTGG	1 cut(s)	806
VpaK11BI	GGWCC	1 cut(s)	1208
XapI	RAATTY	4 cut(s)	58, 531, 1054, 1129
XmnI	GAANNNNTTC	1 cut(s)	215
XspI	CTAG	7 cut(s)	318, 414, 864, 978, 1251, 1343, 1387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.