FvH4_6g16530

Phosphoadenosine phosphosulfate reductase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
10453823 .. 10461758
7936 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16530.t2

Sequence Viewer

Length: 1536 bp
ATGGAGATTGACAAAGCAATCAAGGAGTGTGATGATCGGAGGCTTAAGACCAAGTACAACAACGCTATCTATGTAATTCAGAGAGCTCTTGCCCTCTACTCAATTGAAGAGGTCGCCTTCAGCTTCAATGGGGGAAAGGATTCAACCGTTTTGCTGCACCTACTGAGGGCTGGCTACTTTTTACATAAAGGGGAACAAAGCTGTACAAATGGGGGTGTACAAGATTTTCCAATACGAACAATATATTTTGACTGTCCATCTGCTTTCCCTGAAATCAACTCGTTTACTTATGATGCAGCCAATACATATGGTTTGCAACTGGATATCATTCGCTCGGATTTCAAGTCTGGTTTGGAGGCTTTACTAAAGTCCAAACCAATCAGAGCAATTTTCCTCGGTGTTCGAATGGGTGATCCTACTGCGGTAGGGCAAGAGCAGTTCTCTCCTAGTTCACTTGGATGGCCACCTTTCATGAGGGTGAATCCTATCTTGGATTGGTCATACAGGTATGTGTGGGCTTTTCTCTTAACTTGCAAGGTTCATTACTGCAGTCTTTACGATCAAGGTTATACTTCAATTGGGAGCATATACGACACAGTTCCAAATTCATTGTTGAGCATTAACAATTCCTCCAGCAGCAAAGAAGCATTTAGACCTGCGTATTTGCTTTCTGATGGAAGGTTAGAGAGAGCGGGGAGAGTTAAAAAACTTCCTCATTCAGTTGGTGGGAAAAAGCCTGTTGTTGCCAATGGCCTTACCAGTATGGATTTACCCAAGAGTAGCTTACTCATGGCATCAGCCATAGCTGTAGGGGATGAGATTCTGTTTGGCACTGCTGAGGATCAATTAGGGCATTCACTGTGTAAAAAGCTCCATTCTATTGGTTGGTCGGTATCTCAAACTACTGTTGTACGAAATGAAGTAGATTCTGTGGCTGAAGAAGTTGAGCGACGACAATCAACTAATGATATGGTATTTATCTATGGAGGGGTAGGCCCACTTCATTCAGATGTCACTTTGGCAGGTGTCGCAAAGGCTTTTGGGGTTCGTCTGGCTCCTGATGAAGAATTTGAAGAATATCTGAGGCATCTTATAGGTGATCAGTGCACTGGTGACCGCAATGAGATGGCTCTGTTGCCCGAGGGCATAACTGAGTTATTGCATCATGAAAAGTTGATGGTCCCTTTGATCAAGTGTAAAAATGTAATAATCTTTACGGCAACAAACGTTCTGGAGCTAGATGACGAGTGGAACTGTCTAATTGAATTGATGAGGTCCGGTGGCGAATTAGTAATGGCACAACCATTTGTATCGAAGTGCTTGACAACAAATCTTGCAGATTTAGAAGTTGCCCAACCTGTATCAAAACTTTGCCTTGAATTTCCAGACCTCTACATTGGGTGCTATCGTATATCAAGACGCGAGCCTCTTAGAATTTACTTCGAGGGCAAGGACCAAAACCGAATTGAATCAGCTAAAGAAGCATTGTGCAAGAAGTTCCAGCCTGGGGCTTTCTCGGAAATCAATTTGAGTTGA

Protein Analysis

512

Amino Acids

56.98

Weight (kDa)

5.7

Isoelectric Point (pI)

42.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAPS_reduct PF01507 121 - 200 1.4e-16 Phosphoadenosine phosphosulfate reductase domain
MoCF_biosynth PF00994 268 - 366 3.7e-17 Probable molybdopterin binding domain
FLAD1_M PF24102 435 - 504 2.3e-06 FAD synthase, middle domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1013
Acc36I ACCTGC 2 cut(s) 664, 1013
AccBSI CCGCTC 1 cut(s) 692
AccII CGCG 1 cut(s) 1422
AciI CCGC 3 cut(s) 422, 692, 1117
AclI AACGTT 1 cut(s) 1227
AclWI GGATC 2 cut(s) 407, 849
AcoI YGGCCR 1 cut(s) 461
AcsI RAATTY 4 cut(s) 604, 1067, 1379, 1434
AcuI CTGAAG 2 cut(s) 103, 957
AfaI GTAC 4 cut(s) 56, 205, 219, 912
AfiI CCNNNNNNNGG 2 cut(s) 166, 1507
AflII CTTAAG 1 cut(s) 44
AgsI TTSAA 9 cut(s) 107, 127, 144, 343, 576, 1073, 1265, 1379, 1469
AjnI CCWGG 1 cut(s) 1504
AjuI GAANNNNNNNTTGG 2 cut(s) 473, 505
AluBI AGCT 8 cut(s) 86, 123, 201, 783, 806, 871, 1237, 1475
AluI AGCT 8 cut(s) 86, 123, 201, 783, 806, 871, 1237, 1475
Alw21I GWGCWC 2 cut(s) 88, 1109
Alw44I GTGCAC 1 cut(s) 1105
AlwI GGATC 2 cut(s) 407, 849
Ama87I CYCGRG 1 cut(s) 1139
AoxI GGCC 3 cut(s) 461, 751, 994
ApaLI GTGCAC 1 cut(s) 1105
ApeKI GCWGC 3 cut(s) 154, 296, 636
ApoI RAATTY 4 cut(s) 604, 1067, 1379, 1434
Asp700I GAANNNNTTC 1 cut(s) 139
AspS9I GGNCC 4 cut(s) 995, 1180, 1275, 1453
AsuHPI GGTGA 4 cut(s) 422, 490, 1109, 1124
AsuII TTCGAA 1 cut(s) 403
AvaI CYCGRG 1 cut(s) 1139
AvaII GGWCC 3 cut(s) 1180, 1275, 1453
BaeGI GKGCMC 1 cut(s) 1109
BalI TGGCCA 1 cut(s) 463
BanII GRGCYC 1 cut(s) 88
BarI GAAGNNNNNNTAC 2 cut(s) 984, 1016
Bbv12I GWGCWC 2 cut(s) 88, 1109
BbvCI CCTCAGC 1 cut(s) 837
BbvI GCAGC 3 cut(s) 141, 308, 648
BccI CCATC 5 cut(s) 265, 453, 668, 1120, 1171
BceAI ACGGC 1 cut(s) 1233
BciT130I CCWGG 1 cut(s) 1506
BclI TGATCA 2 cut(s) 1099, 1188
BfaI CTAG 2 cut(s) 447, 1238
BfmI CTRYAG 2 cut(s) 547, 807
BfrI CTTAAG 1 cut(s) 44
BfuAI ACCTGC 2 cut(s) 664, 1013
BisI GCNGC 3 cut(s) 155, 297, 637
BlsI GCNGC 3 cut(s) 156, 298, 638
Bme1390I CCNGG 1 cut(s) 1506
Bme18I GGWCC 3 cut(s) 1180, 1275, 1453
BmeT110I CYCGRG 1 cut(s) 1139
BmgT120I GGNCC 4 cut(s) 995, 1180, 1275, 1453
BmiI GGNNCC 2 cut(s) 1056, 1182
BmrFI CCNGG 1 cut(s) 1506
BmsI GCATC 4 cut(s) 283, 803, 1096, 1171
BplI GAGNNNNNCTC 2 cut(s) 425, 457
BpmI CTGGAG 2 cut(s) 616, 1253
Bpu10I CCTNAGC 1 cut(s) 837
Bpu14I TTCGAA 1 cut(s) 403
BsaJI CCNNGG 3 cut(s) 394, 1140, 1505
BsaWI WCCGGW 1 cut(s) 1277
BsaXI ACNNNNNCTCC 2 cut(s) 614, 644
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 1507
Bse1I ACTGG 3 cut(s) 324, 759, 1114
Bse3DI GCAATG 1 cut(s) 1126
BseBI CCWGG 1 cut(s) 1506
BseDI CCNNGG 3 cut(s) 394, 1140, 1505
BseGI GGATG 2 cut(s) 464, 820
BseLI CCNNNNNNNGG 2 cut(s) 166, 1507
BseMI GCAATG 1 cut(s) 1126
BseMII CTCAG 4 cut(s) 155, 828, 1073, 1143
BseNI ACTGG 3 cut(s) 324, 759, 1114
BseSI GKGCMC 1 cut(s) 1109
BseXI GCAGC 3 cut(s) 141, 308, 648
BsgI GTGCAG 1 cut(s) 140
Bsh1236I CGCG 1 cut(s) 1422
BshFI GGCC 3 cut(s) 463, 753, 996
BsiHKAI GWGCWC 2 cut(s) 88, 1109
BsiHKCI CYCGRG 1 cut(s) 1139
BsiSI CCGG 1 cut(s) 1278
BslFI GGGAC 1 cut(s) 1166
BslI CCNNNNNNNGG 2 cut(s) 166, 1507
BsmFI GGGAC 1 cut(s) 1166
BsmI GAATGC 1 cut(s) 853
BsnI GGCC 3 cut(s) 463, 753, 996
BsoBI CYCGRG 1 cut(s) 1139
Bsp119I TTCGAA 1 cut(s) 403
Bsp1286I GDGCHC 2 cut(s) 88, 1109
Bsp1407I TGTACA 2 cut(s) 203, 217
Bsp143I GATC 6 cut(s) 34, 412, 559, 841, 1099, 1188
BspACI CCGC 3 cut(s) 422, 692, 1117
BspANI GGCC 3 cut(s) 463, 753, 996
BspCNI CTCAG 4 cut(s) 156, 829, 1074, 1144
BspFNI CGCG 1 cut(s) 1422
BspHI TCATGA 2 cut(s) 471, 1165
BspLI GGNNCC 2 cut(s) 1056, 1182
BspMAI CTGCAG 1 cut(s) 551
BspMI ACCTGC 2 cut(s) 664, 1013
BspPI GGATC 2 cut(s) 407, 849
BspT104I TTCGAA 1 cut(s) 403
BspTI CTTAAG 1 cut(s) 44
BsrBI CCGCTC 1 cut(s) 692
BsrDI GCAATG 1 cut(s) 1126
BsrGI TGTACA 2 cut(s) 203, 217
BsrI ACTGG 3 cut(s) 324, 759, 1114
BssECI CCNNGG 3 cut(s) 394, 1140, 1505
BssMI GATC 6 cut(s) 34, 412, 559, 841, 1099, 1188
Bst2UI CCWGG 1 cut(s) 1506
Bst4CI ACNGT 6 cut(s) 148, 254, 598, 861, 907, 1256
Bst6I CTCTTC 1 cut(s) 102
BstAFI CTTAAG 1 cut(s) 44
BstAUI TGTACA 2 cut(s) 203, 217
BstBI TTCGAA 1 cut(s) 403
BstC8I GCNNGC 2 cut(s) 172, 1424
BstDEI CTNAG 5 cut(s) 164, 837, 1082, 1152, 1430
BstEII GGTNACC 1 cut(s) 1112
BstF5I GGATG 2 cut(s) 464, 820
BstFNI CGCG 1 cut(s) 1422
BstKTI GATC 6 cut(s) 37, 415, 562, 844, 1102, 1191
BstMBI GATC 6 cut(s) 34, 412, 559, 841, 1099, 1188
BstMWI GCNNNNNNNGC 2 cut(s) 1028, 1481
BstNI CCWGG 1 cut(s) 1506
BstPI GGTNACC 1 cut(s) 1112
BstSCI CCNGG 1 cut(s) 1504
BstSFI CTRYAG 2 cut(s) 547, 807
BstSLI GKGCMC 1 cut(s) 1109
BstUI CGCG 1 cut(s) 1422
BstV1I GCAGC 3 cut(s) 141, 308, 648
BstXI CCANNNNNNTGG 1 cut(s) 881
BsuRI GGCC 3 cut(s) 463, 753, 996
BtsCI GGATG 2 cut(s) 464, 820
BtsI GCAGTG 1 cut(s) 831
BtsIMutI CAGTG 4 cut(s) 831, 857, 1107, 1109
BveI ACCTGC 2 cut(s) 664, 1013
Cac8I GCNNGC 2 cut(s) 172, 1424
CciI TCATGA 2 cut(s) 471, 1165
Cfr13I GGNCC 4 cut(s) 995, 1180, 1275, 1453
CseI GACGC 1 cut(s) 1428
Csp6I GTAC 4 cut(s) 55, 204, 218, 911
CviAII CATG 3 cut(s) 472, 790, 1166
CviQI GTAC 4 cut(s) 55, 204, 218, 911
DdeI CTNAG 5 cut(s) 164, 837, 1082, 1152, 1430
DpnI GATC 6 cut(s) 36, 414, 561, 843, 1101, 1190
DpnII GATC 6 cut(s) 34, 412, 559, 841, 1099, 1188
EaeI YGGCCR 1 cut(s) 461
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Ecl136II GAGCTC 1 cut(s) 86
Eco24I GRGCYC 1 cut(s) 88
Eco32I GATATC 1 cut(s) 325
Eco47I GGWCC 3 cut(s) 1180, 1275, 1453
Eco53kI GAGCTC 1 cut(s) 86
Eco57I CTGAAG 2 cut(s) 103, 957
Eco88I CYCGRG 1 cut(s) 1139
Eco91I GGTNACC 1 cut(s) 1112
EcoICRI GAGCTC 1 cut(s) 86
EcoO65I GGTNACC 1 cut(s) 1112
EcoRII CCWGG 1 cut(s) 1504
EcoRV GATATC 1 cut(s) 325
EcoT38I GRGCYC 1 cut(s) 88
FaeI CATG 3 cut(s) 475, 793, 1169
FalI AAGNNNNNCTT 2 cut(s) 767, 799
FaqI GGGAC 1 cut(s) 1166
FatI CATG 3 cut(s) 471, 789, 1165
FauI CCCGC 1 cut(s) 685
FauNDI CATATG 1 cut(s) 307
FbaI TGATCA 2 cut(s) 1099, 1188
Fnu4HI GCNGC 3 cut(s) 155, 297, 637
FokI GGATG 2 cut(s) 471, 827
FriOI GRGCYC 1 cut(s) 88
Fsp4HI GCNGC 3 cut(s) 155, 297, 637
FspBI CTAG 2 cut(s) 447, 1238
GluI GCNGC 3 cut(s) 155, 297, 637
GsuI CTGGAG 2 cut(s) 616, 1253
HaeIII GGCC 3 cut(s) 463, 753, 996
HapII CCGG 1 cut(s) 1278
HgaI GACGC 1 cut(s) 1428
Hin1II CATG 3 cut(s) 475, 793, 1169
HinfI GANTC 5 cut(s) 140, 481, 820, 926, 1469
HpaII CCGG 1 cut(s) 1278
HphI GGTGA 4 cut(s) 422, 490, 1109, 1124
Hpy166II GTNNAC 4 cut(s) 218, 285, 452, 1107
Hpy188I TCNGA 8 cut(s) 39, 81, 337, 383, 673, 1009, 1083, 1519
Hpy188III TCNNGA 6 cut(s) 472, 1058, 1166, 1232, 1385, 1416
Hpy8I GTNNAC 4 cut(s) 218, 285, 452, 1107
Hpy99I CGWCG 1 cut(s) 954
HpyAV CCTTC 2 cut(s) 127, 672
HpyCH4III ACNGT 6 cut(s) 148, 254, 598, 861, 907, 1256
HpyCH4IV ACGT 1 cut(s) 1227
HpyCH4V TGCA 9 cut(s) 157, 296, 316, 534, 549, 1107, 1162, 1337, 1491
HpyF10VI GCNNNNNNNGC 2 cut(s) 1028, 1481
HpyF3I CTNAG 5 cut(s) 164, 837, 1082, 1152, 1430
HpySE526I ACGT 1 cut(s) 1227
Hsp92II CATG 3 cut(s) 475, 793, 1169
Ksp22I TGATCA 2 cut(s) 1099, 1188
Kzo9I GATC 6 cut(s) 34, 412, 559, 841, 1099, 1188
LmnI GCTCC 4 cut(s) 582, 876, 1060, 1234
Lsp1109I GCAGC 3 cut(s) 141, 308, 648
LweI GCATC 4 cut(s) 283, 803, 1096, 1171
MaeI CTAG 2 cut(s) 447, 1238
MaeII ACGT 1 cut(s) 1227
MaeIII GTNAC 2 cut(s) 1012, 1112
MalI GATC 6 cut(s) 36, 414, 561, 843, 1101, 1190
MbiI CCGCTC 1 cut(s) 692
MboI GATC 6 cut(s) 34, 412, 559, 841, 1099, 1188
MboII GAAGA 4 cut(s) 119, 950, 1076, 1085
MfeI CAATTG 2 cut(s) 102, 576
MhlI GDGCHC 2 cut(s) 88, 1109
MlsI TGGCCA 1 cut(s) 463
MluNI TGGCCA 1 cut(s) 463
Mox20I TGGCCA 1 cut(s) 463
MroXI GAANNNNTTC 1 cut(s) 139
MscI TGGCCA 1 cut(s) 463
MseI TTAA 4 cut(s) 45, 527, 621, 702
MslI CAYNNNNRTG 3 cut(s) 457, 476, 1008
Msp20I TGGCCA 1 cut(s) 463
MspCI CTTAAG 1 cut(s) 44
MspI CCGG 1 cut(s) 1278
MspR9I CCNGG 1 cut(s) 1506
MunI CAATTG 2 cut(s) 102, 576
Mva1269I GAATGC 1 cut(s) 853
MvaI CCWGG 1 cut(s) 1506
MvnI CGCG 1 cut(s) 1422
MwoI GCNNNNNNNGC 2 cut(s) 1028, 1481
NdeI CATATG 1 cut(s) 307
NdeII GATC 6 cut(s) 34, 412, 559, 841, 1099, 1188
NlaIII CATG 3 cut(s) 475, 793, 1169
NlaIV GGNNCC 2 cut(s) 1056, 1182
NmuCI GTSAC 2 cut(s) 1012, 1112
NspV TTCGAA 1 cut(s) 403
PagI TCATGA 2 cut(s) 471, 1165
PaqCI CACCTGC 1 cut(s) 1013
PctI GAATGC 1 cut(s) 853
PdmI GAANNNNTTC 1 cut(s) 139
PfeI GAWTC 5 cut(s) 140, 481, 820, 926, 1469
PkrI GCNGC 3 cut(s) 156, 298, 638
Psp124BI GAGCTC 1 cut(s) 88
Psp1406I AACGTT 1 cut(s) 1227
Psp6I CCWGG 1 cut(s) 1504
PspEI GGTNACC 1 cut(s) 1112
PspGI CCWGG 1 cut(s) 1504
PspN4I GGNNCC 2 cut(s) 1056, 1182
PspPI GGNCC 4 cut(s) 995, 1180, 1275, 1453
PstI CTGCAG 1 cut(s) 551
RsaI GTAC 4 cut(s) 56, 205, 219, 912
RsaNI GTAC 4 cut(s) 55, 204, 218, 911
RseI CAYNNNNRTG 3 cut(s) 457, 476, 1008
SacI GAGCTC 1 cut(s) 88
SaqAI TTAA 4 cut(s) 45, 527, 621, 702
SatI GCNGC 3 cut(s) 155, 297, 637
Sau3AI GATC 6 cut(s) 34, 412, 559, 841, 1099, 1188
Sau96I GGNCC 4 cut(s) 995, 1180, 1275, 1453
ScrFI CCNGG 1 cut(s) 1506
SduI GDGCHC 2 cut(s) 88, 1109
SfaNI GCATC 4 cut(s) 283, 803, 1096, 1171
SfcI CTRYAG 2 cut(s) 547, 807
SfuI TTCGAA 1 cut(s) 403
SinI GGWCC 3 cut(s) 1180, 1275, 1453
SmiMI CAYNNNNRTG 3 cut(s) 457, 476, 1008
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
SsiI CCGC 3 cut(s) 422, 692, 1117
SspMI CTAG 2 cut(s) 447, 1238
SstI GAGCTC 1 cut(s) 88
StyD4I CCNGG 1 cut(s) 1504
TaaI ACNGT 6 cut(s) 148, 254, 598, 861, 907, 1256
TaiI ACGT 1 cut(s) 1230
TaqI TCGA 3 cut(s) 403, 1313, 1443
TatI WGTACW 3 cut(s) 54, 203, 217
TfiI GAWTC 5 cut(s) 140, 481, 820, 926, 1469
Tru1I TTAA 4 cut(s) 45, 527, 621, 702
Tru9I TTAA 4 cut(s) 45, 527, 621, 702
TscAI CASTG 4 cut(s) 838, 864, 1109, 1114
TseFI GTSAC 2 cut(s) 1012, 1112
TseI GCWGC 3 cut(s) 154, 296, 636
Tsp45I GTSAC 2 cut(s) 1012, 1112
TspDTI ATGAA 7 cut(s) 460, 530, 597, 933, 992, 1077, 1182
TspRI CASTG 4 cut(s) 838, 864, 1109, 1114
Vha464I CTTAAG 1 cut(s) 44
VneI GTGCAC 1 cut(s) 1105
VpaK11BI GGWCC 3 cut(s) 1180, 1275, 1453
XapI RAATTY 4 cut(s) 604, 1067, 1379, 1434
XmnI GAANNNNTTC 1 cut(s) 139
XspI CTAG 2 cut(s) 447, 1238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.