Rorug03G0108900

Phosphoadenosine phosphosulfate reductase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
8765299 .. 8765703
405 bp
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UTR
Exon/CDS
Intron
Rorug03G0108900.1

Sequence Viewer

Length: 318 bp
ATGGAGAGGAGGAAGAGAAGGAATAGGAAGCGTTTGAAGATGGTGGCTTGGAAAACCTGGTTTTGCTTGAAGCAGTCTTTCCTCATCCCAACCAAGTGTTTTCTGATCAAGCTTACTTCGCGCTCAAGGCACAAACAGAAAGGAAATGGGAATGGATTGGTGAGTTTGTACAAAGATATTGAAACTTGTGGCGAGTATGCAGATATAAAAGTGATGTGGGAGATGATTCATTCTTGTCCTCAGAATTCAAACAACAGTACTGAAAGGAGGAAGAGGTCTTCTTCTTATTGGAGATTTTGTGTTCATCCTAGTACATGA

Protein Analysis

105

Amino Acids

12.63

Weight (kDa)

10.42

Isoelectric Point (pI)

72.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 121
AcsI RAATTY 1 cut(s) 244
AfaI GTAC 3 cut(s) 170, 259, 313
AgsI TTSAA 4 cut(s) 37, 70, 182, 249
AjnI CCWGG 1 cut(s) 56
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
ApoI RAATTY 1 cut(s) 244
AspLEI GCGC 1 cut(s) 123
AsuHPI GGTGA 1 cut(s) 172
BbsI GAAGAC 1 cut(s) 270
BccI CCATC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 58
BclI TGATCA 1 cut(s) 105
BfaI CTAG 1 cut(s) 309
BmcAI AGTACT 1 cut(s) 259
Bme1390I CCNGG 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 58
BpiI GAAGAC 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 109
BsaXI ACNNNNNCTCC 2 cut(s) 283, 313
BseBI CCWGG 1 cut(s) 58
BseGI GGATG 2 cut(s) 84, 304
BseMII CTCAG 1 cut(s) 254
BseRI GAGGAG 1 cut(s) 22
Bsh1236I CGCG 1 cut(s) 121
Bsp1407I TGTACA 1 cut(s) 168
Bsp143I GATC 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 253
BspFNI CGCG 1 cut(s) 121
BsrGI TGTACA 1 cut(s) 168
BssMI GATC 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 257
Bst6I CTCTTC 2 cut(s) 8, 266
BstAUI TGTACA 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 240
BstF5I GGATG 2 cut(s) 84, 304
BstFNI CGCG 1 cut(s) 121
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 1 cut(s) 108
BstMBI GATC 1 cut(s) 105
BstMWI GCNNNNNNNGC 2 cut(s) 118, 127
BstNI CCWGG 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 56
BstUI CGCG 1 cut(s) 121
BstV2I GAAGAC 1 cut(s) 270
BtsCI GGATG 2 cut(s) 84, 304
CfoI GCGC 1 cut(s) 123
CsiI ACCWGGT 1 cut(s) 56
Csp6I GTAC 3 cut(s) 169, 258, 312
CviAII CATG 1 cut(s) 315
CviJI RGCY 2 cut(s) 47, 112
CviKI_1 RGCY 2 cut(s) 47, 112
CviQI GTAC 3 cut(s) 169, 258, 312
DdeI CTNAG 1 cut(s) 240
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
Eam1104I CTCTTC 2 cut(s) 8, 266
EarI CTCTTC 2 cut(s) 8, 266
EcoRI GAATTC 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 56
FaeI CATG 1 cut(s) 318
FaiI YATR 3 cut(s) 198, 206, 316
FatI CATG 1 cut(s) 314
FbaI TGATCA 1 cut(s) 105
FokI GGATG 2 cut(s) 71, 291
FspBI CTAG 1 cut(s) 309
GlaI GCGC 1 cut(s) 122
HhaI GCGC 1 cut(s) 123
Hin1II CATG 1 cut(s) 318
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 1 cut(s) 226
HphI GGTGA 1 cut(s) 172
Hpy188I TCNGA 2 cut(s) 105, 243
HpyAV CCTTC 1 cut(s) 12
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4V TGCA 1 cut(s) 200
HpyF10VI GCNNNNNNNGC 2 cut(s) 118, 127
HpyF3I CTNAG 1 cut(s) 240
Hsp92II CATG 1 cut(s) 318
HspAI GCGC 1 cut(s) 121
Ksp22I TGATCA 1 cut(s) 105
Kzo9I GATC 1 cut(s) 105
LpnPI CCDG 2 cut(s) 43, 70
MabI ACCWGGT 1 cut(s) 56
MaeI CTAG 1 cut(s) 309
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MboII GAAGA 5 cut(s) 25, 49, 270, 273, 283
MluCI AATT 1 cut(s) 244
MnlI CCTC 5 cut(s) 3, 92, 249, 261, 267
MspR9I CCNGG 1 cut(s) 58
MvaI CCWGG 1 cut(s) 58
MvnI CGCG 1 cut(s) 121
MwoI GCNNNNNNNGC 2 cut(s) 118, 127
NdeII GATC 1 cut(s) 105
NlaIII CATG 1 cut(s) 318
PfeI GAWTC 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
RsaI GTAC 3 cut(s) 170, 259, 313
RsaNI GTAC 3 cut(s) 169, 258, 312
Sau3AI GATC 1 cut(s) 105
ScaI AGTACT 1 cut(s) 259
ScrFI CCNGG 1 cut(s) 58
SetI ASST 3 cut(s) 59, 114, 278
SexAI ACCWGGT 1 cut(s) 56
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 1 cut(s) 244
SspMI CTAG 1 cut(s) 309
StyD4I CCNGG 1 cut(s) 56
TaaI ACNGT 1 cut(s) 257
TasI AATT 1 cut(s) 244
TatI WGTACW 3 cut(s) 168, 257, 311
TfiI GAWTC 1 cut(s) 226
TspDTI ATGAA 2 cut(s) 218, 293
XapI RAATTY 1 cut(s) 244
XspI CTAG 1 cut(s) 309
ZrmI AGTACT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.