MD04G1091700.v1.1

Phosphoadenosine phosphosulfate reductase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
16353923 .. 16362539
8617 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1091700.v1.1.491

Sequence Viewer

Length: 1482 bp
ATGTTATTCAGAGAGCTCTTGCGCTCTACTCGTAATATTGAAGAGGTTGCCTTCAGCTTCAATGGGGGAAAGGATTCAACTGTTTTGTTGCACCTACTCAGGGCTGGCTACTTTTTGCATAAAGGGGAGCAAAGCTGTTCCAACGAGTGTGTGAAAGATTTTCCTATGCGAACGATATATTTTGAGAGCCCATCTGCTTTCCCTGAAATCAACTCGTTTACTTATGATGCAGCCACTACCTATGGTTTGCAACTAGATATCATCCGCTCTGATTTCAAGTCTGGTTTGGAGGATTTACTTAAATCAAAACCAATCAAAGCTATTTTCCTTGGTGTCCGAATCGGTGATCCTACTGCGGTTGGTCAAGATCAATTCTCTCCTAGTTCAGTTGGATGGCCACCCTTCATGAGGGTGAATCCTATATTGGATTGGTCATACAGAGATGTGTGGGCCTTTCTCTTAACTTGCAAAGTGCAGTACTGCAGTCTTTATGATCAAGGTTATACTTCAATTGGAAGCATACATGACACAGTTCCAAATGCATTATTGAGCATTAACAATTCATCTGACAACAAAGAAGTATTTAGACCTGCGTATTTACTTTCTGATGGAAGATTAGAGAGAGCCGGGAGGGTTAAAAAACTTCCTCCTTCAGTTCGTGGGAATAAGCCTGCTGCTATCAATGGCCTTGATGGTGTGGGCTTACATAAGAGTGGCCTACTCATGGCCTCAGCCATTGCTGTGGGGGATGAGATTTTGTTTGGCACTGTTGAGGATCAATTAGGGCCTTCACTGTGTAGAAAGCTCCATTCTATTGGCTGGTCGGTATCACAAACTGTTGTTGTTCGGAATGATGTAGATGCTGTGGCCGAAGAAGTCGAGCAACGCCAATCAACTGATGATATGGTATTTATGTATGGAGGGGTTGGCCCACTGCACTCAGATGTCACTTTGGCAGGTGTTGCAAAGGCTTTCGCAGTTCGTCTGGCTCCTGATGAAGAATTTGAAGAATATCTGAGGCATCTTATAGGTGATCAATGCACTGGTGACCGGAATGAGATGGCTCTTTTGCCTGAAGGTATCACTGAACTATTGCATCATGAAAAGCTGATTGTCCCTTTGATCAAGTGTAAAAATGTAATAATCTTTACGGCAACAAATGTCTTGGAGCTGGATGAGCAGTGGAACTGTCTAATTGAACTAATGATATCCGATGGTGGGCTAGCAACGATGCAACCATTTGTATCTAGGCACTTGACAACAAACCTTACAGATGTAGAAATTGCTCAACCTCTGTCAAAACTTTGCCTGGAGTTTCCAGACCTTTACATTGGTTGTCGTCGCAAATCAAGGAAGGAGCCTCTTATAATCTATTTTGAGGGCAAGGACCAAGATCAAATTCAATCAGCCATAGAGGCATTGTGCAAGAAGTTCCATCCGGGGGCTTTCGTAGAAACAGCGGTTGTTCAACTGGTCTTCTGA

Protein Analysis

494

Amino Acids

54.85

Weight (kDa)

5.28

Isoelectric Point (pI)

42.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAPS_reduct PF01507 98 - 179 4.5e-17 Phosphoadenosine phosphosulfate reductase domain
MoCF_biosynth PF00994 246 - 345 8.1e-18 Probable molybdopterin binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1367
AarI CACCTGC 1 cut(s) 947
Acc36I ACCTGC 2 cut(s) 598, 947
AccBSI CCGCTC 1 cut(s) 267
AciI CCGC 3 cut(s) 265, 356, 1460
AclWI GGATC 2 cut(s) 341, 783
AcoI YGGCCR 2 cut(s) 395, 867
AcsI RAATTY 2 cut(s) 1001, 1398
AcuI CTGAAG 3 cut(s) 37, 636, 1095
AfaI GTAC 1 cut(s) 479
AfiI CCNNNNNNNGG 5 cut(s) 100, 408, 724, 1218, 1441
AgsI TTSAA 9 cut(s) 41, 61, 78, 277, 510, 1007, 1199, 1403, 1469
AjnI CCWGG 1 cut(s) 1308
AjuI GAANNNNNNNTTGG 4 cut(s) 407, 439, 1383, 1415
AluBI AGCT 7 cut(s) 16, 57, 135, 320, 805, 1108, 1171
AluI AGCT 7 cut(s) 16, 57, 135, 320, 805, 1108, 1171
Alw21I GWGCWC 1 cut(s) 18
AlwI GGATC 2 cut(s) 341, 783
AoxI GGCC 8 cut(s) 395, 450, 685, 715, 726, 785, 867, 928
ApeKI GCWGC 2 cut(s) 230, 674
ApoI RAATTY 2 cut(s) 1001, 1398
Asp700I GAANNNNTTC 1 cut(s) 73
AspLEI GCGC 1 cut(s) 24
AspS9I GGNCC 4 cut(s) 450, 785, 929, 1387
AsuC2I CCSGG 2 cut(s) 628, 1440
AsuHPI GGTGA 4 cut(s) 356, 424, 1043, 1058
AsuNHI GCTAGC 1 cut(s) 1222
AvaII GGWCC 1 cut(s) 1387
BalI TGGCCA 1 cut(s) 397
BanII GRGCYC 2 cut(s) 18, 191
BbsI GAAGAC 1 cut(s) 1468
Bbv12I GWGCWC 1 cut(s) 18
BbvCI CCTCAGC 1 cut(s) 730
BbvI GCAGC 2 cut(s) 242, 661
BccI CCATC 7 cut(s) 199, 387, 602, 686, 1054, 1208, 1443
BceAI ACGGC 1 cut(s) 1167
BciT130I CCWGG 1 cut(s) 1310
BclI TGATCA 3 cut(s) 493, 1033, 1122
BcnI CCSGG 2 cut(s) 628, 1440
BfaI CTAG 4 cut(s) 254, 381, 1223, 1248
BfmI CTRYAG 1 cut(s) 481
BfuAI ACCTGC 2 cut(s) 598, 947
BglI GCCNNNNNGGC 1 cut(s) 1415
BisI GCNGC 2 cut(s) 231, 675
BlsI GCNGC 2 cut(s) 232, 676
BmcAI AGTACT 1 cut(s) 479
Bme1390I CCNGG 3 cut(s) 628, 1310, 1440
Bme18I GGWCC 1 cut(s) 1387
BmgT120I GGNCC 4 cut(s) 450, 785, 929, 1387
BmiI GGNNCC 2 cut(s) 990, 1359
BmrFI CCNGG 3 cut(s) 628, 1310, 1440
BmsI GCATC 5 cut(s) 217, 850, 1030, 1105, 1221
BmtI GCTAGC 1 cut(s) 1226
BpiI GAAGAC 1 cut(s) 1468
BpmI CTGGAG 1 cut(s) 1331
Bpu10I CCTNAGC 1 cut(s) 730
BpuMI CCSGG 2 cut(s) 628, 1440
BsaJI CCNNGG 2 cut(s) 328, 1439
BsaWI WCCGGW 1 cut(s) 1050
Bsc4I CCNNNNNNNGG 5 cut(s) 100, 408, 724, 1218, 1441
Bse1I ACTGG 2 cut(s) 1048, 1476
Bse3DI GCAATG 1 cut(s) 735
BseBI CCWGG 1 cut(s) 1310
BseDI CCNNGG 2 cut(s) 328, 1439
BseGI GGATG 5 cut(s) 261, 398, 754, 1180, 1435
BseLI CCNNNNNNNGG 5 cut(s) 100, 408, 724, 1218, 1441
BseMI GCAATG 1 cut(s) 735
BseMII CTCAG 4 cut(s) 112, 744, 954, 1007
BseNI ACTGG 2 cut(s) 1048, 1476
BseXI GCAGC 2 cut(s) 242, 661
BsgI GTGCAG 2 cut(s) 494, 920
BshFI GGCC 8 cut(s) 397, 452, 687, 717, 728, 787, 869, 930
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 3 cut(s) 627, 1051, 1439
BslFI GGGAC 1 cut(s) 1100
BslI CCNNNNNNNGG 5 cut(s) 100, 408, 724, 1218, 1441
BsmFI GGGAC 1 cut(s) 1100
BsnI GGCC 8 cut(s) 397, 452, 687, 717, 728, 787, 869, 930
Bsp1286I GDGCHC 2 cut(s) 18, 191
Bsp143I GATC 7 cut(s) 346, 367, 493, 775, 1033, 1122, 1393
BspACI CCGC 3 cut(s) 265, 356, 1460
BspANI GGCC 8 cut(s) 397, 452, 687, 717, 728, 787, 869, 930
BspCNI CTCAG 4 cut(s) 111, 743, 953, 1008
BspHI TCATGA 2 cut(s) 405, 1099
BspLI GGNNCC 2 cut(s) 990, 1359
BspMAI CTGCAG 1 cut(s) 485
BspMI ACCTGC 2 cut(s) 598, 947
BspOI GCTAGC 1 cut(s) 1226
BspPI GGATC 2 cut(s) 341, 783
BsrBI CCGCTC 1 cut(s) 267
BsrDI GCAATG 1 cut(s) 735
BsrI ACTGG 2 cut(s) 1048, 1476
BssECI CCNNGG 2 cut(s) 328, 1439
BssMI GATC 7 cut(s) 346, 367, 493, 775, 1033, 1122, 1393
BssT1I CCWWGG 1 cut(s) 328
Bst2UI CCWGG 1 cut(s) 1310
Bst4CI ACNGT 6 cut(s) 82, 532, 769, 795, 838, 1190
Bst6I CTCTTC 1 cut(s) 36
BstAPI GCANNNNNTGC 1 cut(s) 962
BstC8I GCNNGC 3 cut(s) 106, 672, 1224
BstDEI CTNAG 4 cut(s) 98, 730, 940, 1016
BstEII GGTNACC 1 cut(s) 1046
BstENI CCTNNNNNAGG 1 cut(s) 406
BstF5I GGATG 5 cut(s) 261, 398, 754, 1180, 1435
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 7 cut(s) 349, 370, 496, 778, 1036, 1125, 1396
BstMBI GATC 7 cut(s) 346, 367, 493, 775, 1033, 1122, 1393
BstMWI GCNNNNNNNGC 3 cut(s) 962, 1177, 1415
BstNI CCWGG 1 cut(s) 1310
BstPI GGTNACC 1 cut(s) 1046
BstSCI CCNGG 3 cut(s) 626, 1308, 1438
BstSFI CTRYAG 1 cut(s) 481
BstV1I GCAGC 2 cut(s) 242, 661
BstV2I GAAGAC 1 cut(s) 1468
BstXI CCANNNNNNTGG 2 cut(s) 742, 815
BsuRI GGCC 8 cut(s) 397, 452, 687, 717, 728, 787, 869, 930
BtsCI GGATG 5 cut(s) 261, 398, 754, 1180, 1435
BtsI GCAGTG 2 cut(s) 932, 1187
BtsIMutI CAGTG 6 cut(s) 765, 791, 932, 1041, 1083, 1187
BveI ACCTGC 2 cut(s) 598, 947
Cac8I GCNNGC 3 cut(s) 106, 672, 1224
CciI TCATGA 2 cut(s) 405, 1099
CfoI GCGC 1 cut(s) 24
Cfr13I GGNCC 4 cut(s) 450, 785, 929, 1387
Csp6I GTAC 1 cut(s) 478
CviAII CATG 4 cut(s) 406, 524, 724, 1100
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 4 cut(s) 98, 730, 940, 1016
DpnI GATC 7 cut(s) 348, 369, 495, 777, 1035, 1124, 1395
DpnII GATC 7 cut(s) 346, 367, 493, 775, 1033, 1122, 1393
EaeI YGGCCR 2 cut(s) 395, 867
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Ecl136II GAGCTC 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 328
Eco24I GRGCYC 2 cut(s) 18, 191
Eco32I GATATC 2 cut(s) 259, 1209
Eco47I GGWCC 1 cut(s) 1387
Eco53kI GAGCTC 1 cut(s) 16
Eco57I CTGAAG 3 cut(s) 37, 636, 1095
Eco91I GGTNACC 1 cut(s) 1046
EcoICRI GAGCTC 1 cut(s) 16
EcoNI CCTNNNNNAGG 1 cut(s) 406
EcoO109I RGGNCCY 1 cut(s) 785
EcoO65I GGTNACC 1 cut(s) 1046
EcoRII CCWGG 1 cut(s) 1308
EcoRV GATATC 2 cut(s) 259, 1209
EcoT14I CCWWGG 1 cut(s) 328
EcoT22I ATGCAT 1 cut(s) 544
EcoT38I GRGCYC 2 cut(s) 18, 191
ErhI CCWWGG 1 cut(s) 328
FaeI CATG 4 cut(s) 409, 527, 727, 1103
FaqI GGGAC 1 cut(s) 1100
FatI CATG 4 cut(s) 405, 523, 723, 1099
FbaI TGATCA 3 cut(s) 493, 1033, 1122
Fnu4HI GCNGC 2 cut(s) 231, 675
FokI GGATG 5 cut(s) 248, 405, 761, 1187, 1422
FriOI GRGCYC 2 cut(s) 18, 191
Fsp4HI GCNGC 2 cut(s) 231, 675
FspBI CTAG 4 cut(s) 254, 381, 1223, 1248
GlaI GCGC 1 cut(s) 23
GluI GCNGC 2 cut(s) 231, 675
GsuI CTGGAG 1 cut(s) 1331
HaeIII GGCC 8 cut(s) 397, 452, 687, 717, 728, 787, 869, 930
HapII CCGG 3 cut(s) 627, 1051, 1439
HhaI GCGC 1 cut(s) 24
Hin1II CATG 4 cut(s) 409, 527, 727, 1103
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HinfI GANTC 3 cut(s) 74, 339, 415
HpaII CCGG 3 cut(s) 627, 1051, 1439
HphI GGTGA 4 cut(s) 356, 424, 1043, 1058
Hpy166II GTNNAC 1 cut(s) 219
Hpy188III TCNNGA 5 cut(s) 365, 406, 992, 1100, 1319
Hpy8I GTNNAC 1 cut(s) 219
Hpy99I CGWCG 1 cut(s) 1344
HpyAV CCTTC 6 cut(s) 61, 412, 660, 798, 1070, 1348
HpyCH4III ACNGT 6 cut(s) 82, 532, 769, 795, 838, 1190
HpyF10VI GCNNNNNNNGC 3 cut(s) 962, 1177, 1415
HpyF3I CTNAG 4 cut(s) 98, 730, 940, 1016
Hsp92II CATG 4 cut(s) 409, 527, 727, 1103
HspAI GCGC 1 cut(s) 22
Ksp22I TGATCA 3 cut(s) 493, 1033, 1122
Kzo9I GATC 7 cut(s) 346, 367, 493, 775, 1033, 1122, 1393
LmnI GCTCC 5 cut(s) 127, 810, 994, 1168, 1357
Lsp1109I GCAGC 2 cut(s) 242, 661
LweI GCATC 5 cut(s) 217, 850, 1030, 1105, 1221
MaeI CTAG 4 cut(s) 254, 381, 1223, 1248
MaeIII GTNAC 2 cut(s) 946, 1046
MalI GATC 7 cut(s) 348, 369, 495, 777, 1035, 1124, 1395
MbiI CCGCTC 1 cut(s) 267
MboI GATC 7 cut(s) 346, 367, 493, 775, 1033, 1122, 1393
MboII GAAGA 6 cut(s) 53, 624, 884, 1010, 1019, 1468
MfeI CAATTG 1 cut(s) 510
MhlI GDGCHC 2 cut(s) 18, 191
MlsI TGGCCA 1 cut(s) 397
MluCI AATT 8 cut(s) 371, 510, 559, 779, 1001, 1194, 1281, 1398
MluNI TGGCCA 1 cut(s) 397
MmeI TCCRAC 2 cut(s) 165, 370
Mox20I TGGCCA 1 cut(s) 397
Mph1103I ATGCAT 1 cut(s) 544
MroXI GAANNNNTTC 1 cut(s) 73
MscI TGGCCA 1 cut(s) 397
MseI TTAA 4 cut(s) 300, 461, 555, 636
MslI CAYNNNNRTG 4 cut(s) 410, 711, 740, 942
Msp20I TGGCCA 1 cut(s) 397
MspA1I CMGCKG 1 cut(s) 1460
MspI CCGG 3 cut(s) 627, 1051, 1439
MspR9I CCNGG 3 cut(s) 628, 1310, 1440
MunI CAATTG 1 cut(s) 510
MvaI CCWGG 1 cut(s) 1310
MwoI GCNNNNNNNGC 3 cut(s) 962, 1177, 1415
NciI CCSGG 2 cut(s) 628, 1440
NdeII GATC 7 cut(s) 346, 367, 493, 775, 1033, 1122, 1393
NheI GCTAGC 1 cut(s) 1222
NlaIII CATG 4 cut(s) 409, 527, 727, 1103
NlaIV GGNNCC 2 cut(s) 990, 1359
NmuCI GTSAC 2 cut(s) 946, 1046
NsiI ATGCAT 1 cut(s) 544
PagI TCATGA 2 cut(s) 405, 1099
PaqCI CACCTGC 1 cut(s) 947
PdmI GAANNNNTTC 1 cut(s) 73
PfeI GAWTC 3 cut(s) 74, 339, 415
PkrI GCNGC 2 cut(s) 232, 676
PsiI TTATAA 1 cut(s) 1367
Psp124BI GAGCTC 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 1308
PspEI GGTNACC 1 cut(s) 1046
PspGI CCWGG 1 cut(s) 1308
PspN4I GGNNCC 2 cut(s) 990, 1359
PspPI GGNCC 4 cut(s) 450, 785, 929, 1387
PstI CTGCAG 1 cut(s) 485
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
RseI CAYNNNNRTG 4 cut(s) 410, 711, 740, 942
SacI GAGCTC 1 cut(s) 18
SaqAI TTAA 4 cut(s) 300, 461, 555, 636
SatI GCNGC 2 cut(s) 231, 675
Sau3AI GATC 7 cut(s) 346, 367, 493, 775, 1033, 1122, 1393
Sau96I GGNCC 4 cut(s) 450, 785, 929, 1387
ScaI AGTACT 1 cut(s) 479
ScrFI CCNGG 3 cut(s) 628, 1310, 1440
SduI GDGCHC 2 cut(s) 18, 191
SfaNI GCATC 5 cut(s) 217, 850, 1030, 1105, 1221
SfcI CTRYAG 1 cut(s) 481
SinI GGWCC 1 cut(s) 1387
SmiMI CAYNNNNRTG 4 cut(s) 410, 711, 740, 942
Sse9I AATT 8 cut(s) 371, 510, 559, 779, 1001, 1194, 1281, 1398
SsiI CCGC 3 cut(s) 265, 356, 1460
SspI AATATT 1 cut(s) 37
SspMI CTAG 4 cut(s) 254, 381, 1223, 1248
SstI GAGCTC 1 cut(s) 18
StyD4I CCNGG 3 cut(s) 626, 1308, 1438
StyI CCWWGG 1 cut(s) 328
TaaI ACNGT 6 cut(s) 82, 532, 769, 795, 838, 1190
TaqI TCGA 1 cut(s) 879
TasI AATT 8 cut(s) 371, 510, 559, 779, 1001, 1194, 1281, 1398
TatI WGTACW 1 cut(s) 477
TfiI GAWTC 3 cut(s) 74, 339, 415
Tru1I TTAA 4 cut(s) 300, 461, 555, 636
Tru9I TTAA 4 cut(s) 300, 461, 555, 636
TscAI CASTG 6 cut(s) 772, 798, 939, 1048, 1090, 1187
TseFI GTSAC 2 cut(s) 946, 1046
TseI GCWGC 2 cut(s) 230, 674
Tsp45I GTSAC 2 cut(s) 946, 1046
TspDTI ATGAA 4 cut(s) 394, 552, 1011, 1116
TspRI CASTG 6 cut(s) 772, 798, 939, 1048, 1090, 1187
VpaK11BI GGWCC 1 cut(s) 1387
XagI CCTNNNNNAGG 1 cut(s) 406
XapI RAATTY 2 cut(s) 1001, 1398
XmnI GAANNNNTTC 1 cut(s) 73
XspI CTAG 4 cut(s) 254, 381, 1223, 1248
ZrmI AGTACT 1 cut(s) 479
Zsp2I ATGCAT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.