MD12G1109700.v1.1

Phosphoadenosine phosphosulfate reductase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
17393802 .. 17400634
6833 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1109700.v1.1.491

Sequence Viewer

Length: 1509 bp
ATGATCGAAGGCTTAAGACCAAGTACAACAACGCTATCCATGTTATTCAGAGAGCTCTTGCGCTCTACTCGTAATATTGAAGAGGTTGCCTTCAGCTTTAATGGGGGAAAGGATTCAACTGTTTTGTTGCACCTACTCAGGGCTGGCTACTTTTTGCATAAAGGGGAGCAAAGCTGTTCTAACGGGGGTGTAAAATATTTTCCAATGCGAACGATATATTTCGAGTGCCCATCTGCTTTCCCTGAAATCAACTCGTTTACTTATGATACAGCCACTACCTATGGTTTGCAACTGGATATCATTCGCTCTGATTTCAAGTCTGGTTTGGAGGATTTACTAAAATCCAAACCAATCAAAGCTATTTTCCTTGGTGTCCGAATCGGTGATCCTACTGCGGTTGGTCAAGAACAATTTTCTCCCAGTTCAGTTGGATGGCCACCTTTCATGAGGGTGAATCCTATATTGGATTGGTCATACAGAGATGTGTGGGCCTTACTCTTAACTTGCAAAGTGCAGTACTGCAGTCTTTATGATCAAGGTTATACTTCAATTGGAAGCATATATGACACAGTTCCAAATGCATTATTGAGCATTAACAATTCATCTGACAACAAAGAAGTATTTAGACCTGCGTATTTACTTTCTGATGGAAGATTAGAGAGAGCCGGAAGGGTTAAAAAACTTTCTTCTTCGGTTCGTGGGCATCAGTCTGCTGTTATGAATGGCCTTGATGGTGTGGGCTTACATAACAGTAGCCTACTCATGTCCTCAGCCATTGCTGTGGGGGATGAGATTCTGTTTGGCACTGTTGAGGATCAAATAGGGCCTTCATTGTGTAGAAAGCTCCATTCTATTGGCTGGTTGGTATCACAAACTGCTGTTGTTCGGAATGATATAGATGCTGTCGCCGAAGAAGTCGAGCGACGACAATCAACTGATGATATGGTATTTATGTGTGGAGGGGTTGGTCCACTGCACTCAGATGTCACTTTGGCAGGTGTTGCAAAGGCTTTTGCTGTTCGTCTGGCTCCTGATGAAGAATTTGAAGAATATCTAAGGCATCTTATAGGTGATCAATGCACTGGTGACCGGAATGAGATGGCTCTGTTGCCTGAAGGTATCACTGAACTATTGCATCATGAAAAGCTGATTGTCCCTTTGATCAAGTGTAAAAATGTAATAATCCTTACTGCAACAAATATCTTGGAGCTGGATGAGCAGTGGAACTGTCTAATTGAACTAATGAGATCCGATGGTGCACTAGCAACGATGCAACCATTTGTATCTAAGCACTTGACAACAAACCTTACAGATGTAGAAATTGCTCAACCTCTGTCAAAACTTTGCCTTGAATTTCCGGACCTTTACATTGGTTGTCGCCGCAAATCAAGGACGGAGCCTCTTATAATCTACTTCAAGGGCAAGGACCAAGACCGAATTCAATCAGCCATAGAGGCATTGTGCAAGAAGTTCCATCCGGGGGCTTTGGTTGAAATCAACTCAAGTTGA

Protein Analysis

503

Amino Acids

55.79

Weight (kDa)

5.57

Isoelectric Point (pI)

47.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAPS_reduct PF01507 29 - 191 1.5e-20 Phosphoadenosine phosphosulfate reductase domain
MoCF_biosynth PF00994 259 - 358 1.1e-17 Probable molybdopterin binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1406
AarI CACCTGC 1 cut(s) 986
Acc36I ACCTGC 2 cut(s) 637, 986
AccIII TCCGGA 1 cut(s) 1357
AciI CCGC 2 cut(s) 395, 1381
AclWI GGATC 3 cut(s) 380, 822, 1242
AcoI YGGCCR 1 cut(s) 434
AcsI RAATTY 3 cut(s) 1040, 1352, 1437
AcuI CTGAAG 2 cut(s) 76, 1134
AfaI GTAC 2 cut(s) 25, 518
AfiI CCNNNNNNNGG 2 cut(s) 139, 1480
AflII CTTAAG 1 cut(s) 13
AjuI GAANNNNNNNTTGG 4 cut(s) 446, 478, 1422, 1454
AluBI AGCT 7 cut(s) 55, 96, 174, 359, 844, 1147, 1210
AluI AGCT 7 cut(s) 55, 96, 174, 359, 844, 1147, 1210
Alw21I GWGCWC 2 cut(s) 57, 1261
Alw44I GTGCAC 1 cut(s) 1257
AlwI GGATC 3 cut(s) 380, 822, 1242
Aor13HI TCCGGA 1 cut(s) 1357
AoxI GGCC 4 cut(s) 434, 489, 724, 824
ApaLI GTGCAC 1 cut(s) 1257
ApoI RAATTY 3 cut(s) 1040, 1352, 1437
Asp700I GAANNNNTTC 1 cut(s) 112
AspLEI GCGC 1 cut(s) 63
AspS9I GGNCC 5 cut(s) 489, 824, 968, 1360, 1426
AsuC2I CCSGG 1 cut(s) 1479
AsuHPI GGTGA 4 cut(s) 395, 463, 1082, 1097
AvaII GGWCC 3 cut(s) 968, 1360, 1426
BaeGI GKGCMC 2 cut(s) 230, 1261
BalI TGGCCA 1 cut(s) 436
BanII GRGCYC 1 cut(s) 57
Bbv12I GWGCWC 2 cut(s) 57, 1261
BbvCI CCTCAGC 1 cut(s) 769
BccI CCATC 7 cut(s) 238, 426, 641, 725, 1093, 1247, 1482
BclI TGATCA 3 cut(s) 532, 1072, 1161
BcnI CCSGG 1 cut(s) 1479
BfaI CTAG 1 cut(s) 1262
BfmI CTRYAG 1 cut(s) 520
BfrI CTTAAG 1 cut(s) 13
BfuAI ACCTGC 2 cut(s) 637, 986
BglI GCCNNNNNGGC 1 cut(s) 1454
BisI GCNGC 1 cut(s) 1381
BlsI GCNGC 1 cut(s) 1382
BmcAI AGTACT 1 cut(s) 518
Bme1390I CCNGG 1 cut(s) 1479
Bme18I GGWCC 3 cut(s) 968, 1360, 1426
BmgT120I GGNCC 5 cut(s) 489, 824, 968, 1360, 1426
BmiI GGNNCC 2 cut(s) 1029, 1398
BmrFI CCNGG 1 cut(s) 1479
BmrI ACTGGG 1 cut(s) 414
BmsI GCATC 5 cut(s) 712, 889, 1069, 1144, 1260
BmuI ACTGGG 1 cut(s) 414
Bpu10I CCTNAGC 1 cut(s) 769
BpuEI CTTGAG 1 cut(s) 1486
BpuMI CCSGG 1 cut(s) 1479
BsaJI CCNNGG 2 cut(s) 367, 1478
BsaWI WCCGGW 2 cut(s) 1089, 1357
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 1480
Bse1I ACTGG 3 cut(s) 297, 420, 1087
Bse3DI GCAATG 1 cut(s) 774
BseAI TCCGGA 1 cut(s) 1357
BseDI CCNNGG 2 cut(s) 367, 1478
BseGI GGATG 4 cut(s) 437, 793, 1219, 1474
BseLI CCNNNNNNNGG 2 cut(s) 139, 1480
BseMI GCAATG 1 cut(s) 774
BseMII CTCAG 3 cut(s) 151, 783, 993
BseNI ACTGG 3 cut(s) 297, 420, 1087
BseSI GKGCMC 2 cut(s) 230, 1261
BsgI GTGCAG 2 cut(s) 533, 959
BshFI GGCC 4 cut(s) 436, 491, 726, 826
BsiHKAI GWGCWC 2 cut(s) 57, 1261
BsiSI CCGG 4 cut(s) 666, 1090, 1358, 1478
BslFI GGGAC 1 cut(s) 1139
BslI CCNNNNNNNGG 2 cut(s) 139, 1480
BsmFI GGGAC 1 cut(s) 1139
BsnI GGCC 4 cut(s) 436, 491, 726, 826
Bsp1286I GDGCHC 3 cut(s) 57, 230, 1261
Bsp13I TCCGGA 1 cut(s) 1357
Bsp143I GATC 7 cut(s) 3, 385, 532, 814, 1072, 1161, 1247
BspACI CCGC 2 cut(s) 395, 1381
BspANI GGCC 4 cut(s) 436, 491, 726, 826
BspCNI CTCAG 3 cut(s) 150, 782, 992
BspEI TCCGGA 1 cut(s) 1357
BspHI TCATGA 2 cut(s) 444, 1138
BspLI GGNNCC 2 cut(s) 1029, 1398
BspMAI CTGCAG 1 cut(s) 524
BspMI ACCTGC 2 cut(s) 637, 986
BspPI GGATC 3 cut(s) 380, 822, 1242
BspTI CTTAAG 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 774
BsrI ACTGG 3 cut(s) 297, 420, 1087
BssECI CCNNGG 2 cut(s) 367, 1478
BssMI GATC 7 cut(s) 3, 385, 532, 814, 1072, 1161, 1247
BssT1I CCWWGG 1 cut(s) 367
Bst4CI ACNGT 5 cut(s) 121, 571, 752, 808, 1229
Bst6I CTCTTC 1 cut(s) 75
BstAFI CTTAAG 1 cut(s) 13
BstAPI GCANNNNNTGC 1 cut(s) 1001
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 5 cut(s) 137, 769, 979, 1055, 1287
BstEII GGTNACC 1 cut(s) 1085
BstF5I GGATG 4 cut(s) 437, 793, 1219, 1474
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 7 cut(s) 6, 388, 535, 817, 1075, 1164, 1250
BstMBI GATC 7 cut(s) 3, 385, 532, 814, 1072, 1161, 1247
BstMWI GCNNNNNNNGC 3 cut(s) 1001, 1216, 1454
BstPI GGTNACC 1 cut(s) 1085
BstSCI CCNGG 1 cut(s) 1477
BstSFI CTRYAG 1 cut(s) 520
BstSLI GKGCMC 2 cut(s) 230, 1261
BstX2I RGATCY 1 cut(s) 1247
BstXI CCANNNNNNTGG 2 cut(s) 781, 854
BstYI RGATCY 1 cut(s) 1247
BsuRI GGCC 4 cut(s) 436, 491, 726, 826
BtsCI GGATG 4 cut(s) 437, 793, 1219, 1474
BtsI GCAGTG 2 cut(s) 971, 1226
BtsIMutI CAGTG 5 cut(s) 804, 971, 1080, 1122, 1226
BveI ACCTGC 2 cut(s) 637, 986
Cac8I GCNNGC 1 cut(s) 145
CciI TCATGA 2 cut(s) 444, 1138
CfoI GCGC 1 cut(s) 63
Cfr13I GGNCC 5 cut(s) 489, 824, 968, 1360, 1426
Csp6I GTAC 2 cut(s) 24, 517
CviAII CATG 4 cut(s) 40, 445, 763, 1139
CviQI GTAC 2 cut(s) 24, 517
DdeI CTNAG 5 cut(s) 137, 769, 979, 1055, 1287
DpnI GATC 7 cut(s) 5, 387, 534, 816, 1074, 1163, 1249
DpnII GATC 7 cut(s) 3, 385, 532, 814, 1072, 1161, 1247
EaeI YGGCCR 1 cut(s) 434
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Ecl136II GAGCTC 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 367
Eco24I GRGCYC 1 cut(s) 57
Eco32I GATATC 1 cut(s) 298
Eco47I GGWCC 3 cut(s) 968, 1360, 1426
Eco53kI GAGCTC 1 cut(s) 55
Eco57I CTGAAG 2 cut(s) 76, 1134
Eco91I GGTNACC 1 cut(s) 1085
EcoICRI GAGCTC 1 cut(s) 55
EcoO109I RGGNCCY 1 cut(s) 824
EcoO65I GGTNACC 1 cut(s) 1085
EcoRI GAATTC 1 cut(s) 1437
EcoRV GATATC 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 367
EcoT22I ATGCAT 1 cut(s) 583
EcoT38I GRGCYC 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 367
FaeI CATG 4 cut(s) 43, 448, 766, 1142
FaqI GGGAC 1 cut(s) 1139
FatI CATG 4 cut(s) 39, 444, 762, 1138
FbaI TGATCA 3 cut(s) 532, 1072, 1161
Fnu4HI GCNGC 1 cut(s) 1381
FokI GGATG 4 cut(s) 444, 800, 1226, 1461
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 1381
FspBI CTAG 1 cut(s) 1262
GlaI GCGC 1 cut(s) 62
GluI GCNGC 1 cut(s) 1381
HaeIII GGCC 4 cut(s) 436, 491, 726, 826
HapII CCGG 4 cut(s) 666, 1090, 1358, 1478
HhaI GCGC 1 cut(s) 63
Hin1II CATG 4 cut(s) 43, 448, 766, 1142
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HinfI GANTC 4 cut(s) 113, 378, 454, 793
HpaII CCGG 4 cut(s) 666, 1090, 1358, 1478
HphI GGTGA 4 cut(s) 395, 463, 1082, 1097
Hpy166II GTNNAC 3 cut(s) 258, 971, 1259
Hpy188I TCNGA 8 cut(s) 50, 310, 377, 607, 646, 888, 982, 1252
Hpy188III TCNNGA 5 cut(s) 404, 445, 1031, 1139, 1358
Hpy8I GTNNAC 3 cut(s) 258, 971, 1259
Hpy99I CGWCG 1 cut(s) 927
HpyAV CCTTC 4 cut(s) 100, 663, 837, 1109
HpyCH4III ACNGT 5 cut(s) 121, 571, 752, 808, 1229
HpyF10VI GCNNNNNNNGC 3 cut(s) 1001, 1216, 1454
HpyF3I CTNAG 5 cut(s) 137, 769, 979, 1055, 1287
Hsp92II CATG 4 cut(s) 43, 448, 766, 1142
HspAI GCGC 1 cut(s) 61
Kpn2I TCCGGA 1 cut(s) 1357
Ksp22I TGATCA 3 cut(s) 532, 1072, 1161
Kzo9I GATC 7 cut(s) 3, 385, 532, 814, 1072, 1161, 1247
LmnI GCTCC 5 cut(s) 166, 849, 1033, 1207, 1396
LweI GCATC 5 cut(s) 712, 889, 1069, 1144, 1260
MaeI CTAG 1 cut(s) 1262
MaeIII GTNAC 2 cut(s) 985, 1085
MalI GATC 7 cut(s) 5, 387, 534, 816, 1074, 1163, 1249
MboI GATC 7 cut(s) 3, 385, 532, 814, 1072, 1161, 1247
MboII GAAGA 7 cut(s) 92, 663, 678, 681, 923, 1049, 1058
MfeI CAATTG 1 cut(s) 549
MflI RGATCY 1 cut(s) 1247
MhlI GDGCHC 3 cut(s) 57, 230, 1261
MlsI TGGCCA 1 cut(s) 436
MluCI AATT 8 cut(s) 410, 549, 598, 1040, 1233, 1320, 1352, 1437
MluNI TGGCCA 1 cut(s) 436
MmeI TCCRAC 1 cut(s) 409
MnlI CCTC 9 cut(s) 76, 322, 441, 778, 805, 953, 1341, 1410, 1447
Mox20I TGGCCA 1 cut(s) 436
Mph1103I ATGCAT 1 cut(s) 583
MroI TCCGGA 1 cut(s) 1357
MroXI GAANNNNTTC 1 cut(s) 112
MscI TGGCCA 1 cut(s) 436
MseI TTAA 5 cut(s) 14, 99, 500, 594, 675
MslI CAYNNNNRTG 3 cut(s) 449, 779, 981
Msp20I TGGCCA 1 cut(s) 436
MspCI CTTAAG 1 cut(s) 13
MspI CCGG 4 cut(s) 666, 1090, 1358, 1478
MspR9I CCNGG 1 cut(s) 1479
MunI CAATTG 1 cut(s) 549
MwoI GCNNNNNNNGC 3 cut(s) 1001, 1216, 1454
NciI CCSGG 1 cut(s) 1479
NdeII GATC 7 cut(s) 3, 385, 532, 814, 1072, 1161, 1247
NlaIII CATG 4 cut(s) 43, 448, 766, 1142
NlaIV GGNNCC 2 cut(s) 1029, 1398
NmuCI GTSAC 2 cut(s) 985, 1085
NsiI ATGCAT 1 cut(s) 583
PagI TCATGA 2 cut(s) 444, 1138
PaqCI CACCTGC 1 cut(s) 986
PdmI GAANNNNTTC 1 cut(s) 112
PfeI GAWTC 4 cut(s) 113, 378, 454, 793
PkrI GCNGC 1 cut(s) 1382
PsiI TTATAA 1 cut(s) 1406
Psp124BI GAGCTC 1 cut(s) 57
PspEI GGTNACC 1 cut(s) 1085
PspN4I GGNNCC 2 cut(s) 1029, 1398
PspPI GGNCC 5 cut(s) 489, 824, 968, 1360, 1426
PstI CTGCAG 1 cut(s) 524
PsuI RGATCY 1 cut(s) 1247
RsaI GTAC 2 cut(s) 25, 518
RsaNI GTAC 2 cut(s) 24, 517
RseI CAYNNNNRTG 3 cut(s) 449, 779, 981
SacI GAGCTC 1 cut(s) 57
SaqAI TTAA 5 cut(s) 14, 99, 500, 594, 675
SatI GCNGC 1 cut(s) 1381
Sau3AI GATC 7 cut(s) 3, 385, 532, 814, 1072, 1161, 1247
Sau96I GGNCC 5 cut(s) 489, 824, 968, 1360, 1426
ScaI AGTACT 1 cut(s) 518
ScrFI CCNGG 1 cut(s) 1479
SduI GDGCHC 3 cut(s) 57, 230, 1261
SfaNI GCATC 5 cut(s) 712, 889, 1069, 1144, 1260
SfcI CTRYAG 1 cut(s) 520
SinI GGWCC 3 cut(s) 968, 1360, 1426
SmiMI CAYNNNNRTG 3 cut(s) 449, 779, 981
SmlI CTYRAG 2 cut(s) 13, 1501
SmoI CTYRAG 2 cut(s) 13, 1501
Sse9I AATT 8 cut(s) 410, 549, 598, 1040, 1233, 1320, 1352, 1437
SsiI CCGC 2 cut(s) 395, 1381
SspI AATATT 2 cut(s) 76, 197
SspMI CTAG 1 cut(s) 1262
SstI GAGCTC 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 1477
StyI CCWWGG 1 cut(s) 367
TaaI ACNGT 5 cut(s) 121, 571, 752, 808, 1229
TaqI TCGA 3 cut(s) 6, 222, 918
TaqII GACCGA 1 cut(s) 1449
TasI AATT 8 cut(s) 410, 549, 598, 1040, 1233, 1320, 1352, 1437
TatI WGTACW 2 cut(s) 23, 516
TauI GCSGC 1 cut(s) 1383
TfiI GAWTC 4 cut(s) 113, 378, 454, 793
Tru1I TTAA 5 cut(s) 14, 99, 500, 594, 675
Tru9I TTAA 5 cut(s) 14, 99, 500, 594, 675
TscAI CASTG 5 cut(s) 811, 978, 1087, 1129, 1226
TseFI GTSAC 2 cut(s) 985, 1085
Tsp45I GTSAC 2 cut(s) 985, 1085
TspDTI ATGAA 6 cut(s) 433, 591, 734, 819, 1050, 1155
TspGWI ACGGA 1 cut(s) 1409
TspRI CASTG 5 cut(s) 811, 978, 1087, 1129, 1226
Vha464I CTTAAG 1 cut(s) 13
VneI GTGCAC 1 cut(s) 1257
VpaK11BI GGWCC 3 cut(s) 968, 1360, 1426
XapI RAATTY 3 cut(s) 1040, 1352, 1437
XmnI GAANNNNTTC 1 cut(s) 112
XspI CTAG 1 cut(s) 1262
ZrmI AGTACT 1 cut(s) 518
Zsp2I ATGCAT 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.