Rorug03G0109000

Phosphoadenosine phosphosulfate reductase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
8767713 .. 8768405
693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0109000.1

Sequence Viewer

Length: 585 bp
ATGGATGATGTTATACCACAATCCGAGAGCCACGACCTGACAACCCCTTCAAATCATAGCCCAAAAGGTGATGAAGCTAAAGGAGAAGGAGGGAGAGTAGGTAATGGGTCCATCAGCAACCTGAAAATCCCTACTTTGAGCTCTGGAGCTGAAGAACATGGTGGAGATGGAGAAGGTGGTGAAGATGAAGAAAAGGGTGGTGGGCTTATAACCAACTTCATCTCCAACTTGGTGTCACCAAGGAGTTCTAAAGCAGGGGAGGTTACTAAGCGAAAAGTTGAAGATGAAGTTGAAGCTGGTGAGATAGTTAATGGTAAGACAGAGCAAGATGTGGGTGGTGGTGAAAATGGTGGAGGGGTGATTTCAAACATCATTTCCAACTTCTTTCATCCAAGTGAGGAAGAGAAAGAAGGAGAGAAGGTGAAAGATGGTGGAAATAAAAGGTTGAAGATGGATGAGGAGGAAGGAGGTAAAGGAGGCCTCATTGAAAACATTGTCTCTCACTTGCCTACATCAATTCCAGATGATGCAGCTCCAACAACTGATGAGGCCTCCATTCTTATTCACTCCGTTGTCAAAGACTAG

Protein Analysis

194

Amino Acids

20.17

Weight (kDa)

4.56

Isoelectric Point (pI)

49.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 171
AgsI TTSAA 6 cut(s) 51, 281, 293, 366, 448, 488
AluBI AGCT 5 cut(s) 77, 141, 149, 296, 533
AluI AGCT 5 cut(s) 77, 141, 149, 296, 533
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 502
AoxI GGCC 2 cut(s) 478, 549
ApeKI GCWGC 1 cut(s) 530
AspS9I GGNCC 1 cut(s) 108
AsuHPI GGTGA 7 cut(s) 80, 191, 228, 311, 353, 370, 433
AvaII GGWCC 1 cut(s) 108
BanII GRGCYC 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 542
BccI CCATC 4 cut(s) 119, 161, 422, 445
BcoDI GTCTC 1 cut(s) 502
BfaI CTAG 1 cut(s) 583
BisI GCNGC 1 cut(s) 531
BlsI GCNGC 1 cut(s) 532
Bme18I GGWCC 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 108
BmiI GGNNCC 1 cut(s) 109
BmsI GCATC 1 cut(s) 517
BpmI CTGGAG 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 239
BsaXI ACNNNNNCTCC 8 cut(s) 81, 85, 111, 115, 206, 236, 405, 435
BseDI CCNNGG 1 cut(s) 239
BseGI GGATG 3 cut(s) 10, 388, 460
BseRI GAGGAG 1 cut(s) 473
BseXI GCAGC 1 cut(s) 542
BshFI GGCC 2 cut(s) 480, 551
BsiHKAI GWGCWC 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 502
BsnI GGCC 2 cut(s) 480, 551
Bsp1286I GDGCHC 1 cut(s) 143
BspANI GGCC 2 cut(s) 480, 551
BspLI GGNNCC 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 239
BssT1I CCWWGG 1 cut(s) 239
Bst6I CTCTTC 1 cut(s) 396
BstDEI CTNAG 1 cut(s) 267
BstF5I GGATG 3 cut(s) 10, 388, 460
BstMAI GTCTC 1 cut(s) 502
BstV1I GCAGC 1 cut(s) 542
BsuRI GGCC 2 cut(s) 480, 551
BtsCI GGATG 3 cut(s) 10, 388, 460
Cfr13I GGNCC 1 cut(s) 108
CviAII CATG 1 cut(s) 158
DdeI CTNAG 1 cut(s) 267
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
Ecl136II GAGCTC 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 239
Eco147I AGGCCT 2 cut(s) 480, 551
Eco24I GRGCYC 1 cut(s) 143
Eco47I GGWCC 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 141
Eco57I CTGAAG 1 cut(s) 171
EcoICRI GAGCTC 1 cut(s) 141
EcoT14I CCWWGG 1 cut(s) 239
EcoT38I GRGCYC 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 239
FaeI CATG 1 cut(s) 161
FaiI YATR 4 cut(s) 14, 57, 159, 209
FatI CATG 1 cut(s) 157
Fnu4HI GCNGC 1 cut(s) 531
FokI GGATG 3 cut(s) 17, 375, 467
FriOI GRGCYC 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 531
FspBI CTAG 1 cut(s) 583
GluI GCNGC 1 cut(s) 531
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 2 cut(s) 480, 551
Hin1II CATG 1 cut(s) 161
HphI GGTGA 7 cut(s) 80, 191, 228, 311, 353, 370, 433
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 2 cut(s) 144, 521
HpyAV CCTTC 6 cut(s) 57, 80, 167, 404, 412, 458
HpyCH4V TGCA 1 cut(s) 530
HpyF3I CTNAG 1 cut(s) 267
Hsp92II CATG 1 cut(s) 161
LmnI GCTCC 2 cut(s) 146, 538
LpnPI CCDG 6 cut(s) 50, 129, 134, 240, 282, 534
Lsp1109I GCAGC 1 cut(s) 542
LweI GCATC 1 cut(s) 517
MaeI CTAG 1 cut(s) 583
MaeIII GTNAC 2 cut(s) 234, 262
MboII GAAGA 6 cut(s) 164, 194, 200, 293, 413, 460
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 1 cut(s) 516
MmeI TCCRAC 3 cut(s) 249, 402, 560
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 393
NlaIII CATG 1 cut(s) 161
NlaIV GGNNCC 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 234
PceI AGGCCT 2 cut(s) 480, 551
PkrI GCNGC 1 cut(s) 532
PsiI TTATAA 1 cut(s) 209
Psp124BI GAGCTC 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 1 cut(s) 108
RseI CAYNNNNRTG 1 cut(s) 393
SacI GAGCTC 1 cut(s) 143
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 1 cut(s) 531
Sau96I GGNCC 1 cut(s) 108
SduI GDGCHC 1 cut(s) 143
SfaNI GCATC 1 cut(s) 517
SinI GGWCC 1 cut(s) 108
SmiMI CAYNNNNRTG 1 cut(s) 393
Sse9I AATT 1 cut(s) 516
SseBI AGGCCT 2 cut(s) 480, 551
SspMI CTAG 1 cut(s) 583
SstI GAGCTC 1 cut(s) 143
StuI AGGCCT 2 cut(s) 480, 551
StyI CCWWGG 1 cut(s) 239
TasI AATT 1 cut(s) 516
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseFI GTSAC 1 cut(s) 234
TseI GCWGC 1 cut(s) 530
Tsp45I GTSAC 1 cut(s) 234
TspDTI ATGAA 5 cut(s) 87, 201, 208, 300, 377
TspGWI ACGGA 1 cut(s) 559
VpaK11BI GGWCC 1 cut(s) 108
XspI CTAG 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.