Rroxscaffold_6G00410810

Phosphoadenosine phosphosulfate reductase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
33219002 .. 33225979
6978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00410810.1

Sequence Viewer

Length: 1419 bp
ATGGAGATTGACAAAGCAATCAGGGAGTGTGATGATCGAAGGCTTAAGACCAAGTACAACAACGCTATCTATGTTATCCAGAGAGCTCTTGCGCTCTACTCGTTTAGTCTTGTATCACGTAGTGTTCTTGCTGTGAGAATTGAAGAGGTCACGTTCAGCTTCAATGGGGGAAAGGATTCAACTGTTTTGCTGCATCTACTTAGGGCTGGCTACTTTTTGCATAAAGGGGAACAGAGCTGTATAAATGGGGGTGTAAAAGATTTTCCAATGCGAACAATATATTTCGAGTGCCCGTCTGCTTTCCCTGAAATCAACTCGTTTACTTATGATACAGCCAATATGTATGGTTTGCAACTGGATATCATACGCTCAGATTTCAAGTCTGGTTTGGAGGCTTTACTAAAGGCCAAACCAATCAGAGCAATTTTTCTCGGTGTCCGAATCGGTGATCCTACTGCGTTAGGGCAAGAACAGTTCTCTCCTAGTTCACCTGGATGGCCACCTTTCATGAGGGTAAACCCTATCTTGGATTGGTCATACAGAGATGTGTGGGCCTTTCTCTTAACTTCCAAGGTTCAGTACTGCAGTCTTTATGATCAAGGTTATACTTCAATTGGAAGCGTATACGACACAGTTCCAAATTCATTATTGAGCATGAACAATTCCTCCAGCAGCAAAGAAGTATTTAGACCCGCTTATTTGCTCTCTGATGGAAGGTTAGAGAGAGCAGGGAGAGTTAAAAAACTTCCTCCTTCAGTTGGTGGAAAGAAGCCTGTTGTTGCCAATGGCCTTAACAGCATTGACTTGCCCAAGAGTAGCTTACTCATGGCGTCAGCCATAGCTGTAGGGGATGAGATTCTGCTTGGCACTGCTGAGGATCAATTAGGGCATTCACTGTGTAGAAAGCTCCATTCCATTGGTTGGTCAGTATCACAAACAACCATTGTACGAAATGATATAGATTCTGTGGCTGAAGAAGTTGAGCGACGACAATCAACTAATGATATGGTATTTATATATGGAGGGGTAGGCCCACTCCATTCAGATGTTACTTTGGCAGGTGTTGCAAAGGCTTTTGGGGTTCGTCTGGCTCCTGATGAAGAATTTGAAGAATATCTGAGGCATCTTATAGGTGATCAATGCTCTGGTGACCGGAATGAGATGGCTCTGTTGCCCGAGGGTATTACTGAATTGTTGCATCATGAAAAGTTGATTGTCCCTTTGTTAGAAGTTGCTCAACCTGTGTCAAAACTTTGCCTCGAATTTCCTGACGTCTACATTGGATGCTATCGAAAATCAAGACGCGAGCCTCTTAGAATTTACTTAGAGGGCAAGGACCAAGATCGAATTGAATCAGCCAAAGAAGCATTGTGCAAGAAGTTCCATCCAGGGGCATTCTCTGAAATCAATTTGAGTTGA

Protein Analysis

472

Amino Acids

52.61

Weight (kDa)

6.19

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAPS_reduct PF01507 50 - 212 8.6e-22 Phosphoadenosine phosphosulfate reductase domain
MoCF_biosynth PF00994 280 - 376 8.7e-18 Probable molybdopterin binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1049
AatII GACGTC 1 cut(s) 1275
Acc36I ACCTGC 1 cut(s) 1049
AccB7I CCANNNNNTGG 1 cut(s) 921
AccI GTMKAC 2 cut(s) 624, 1275
AccII CGCG 1 cut(s) 1305
AciI CCGC 1 cut(s) 693
AclWI GGATC 2 cut(s) 443, 885
AcoI YGGCCR 1 cut(s) 497
AcsI RAATTY 4 cut(s) 640, 1103, 1262, 1317
AcuI CTGAAG 2 cut(s) 738, 993
AcyI GRCGYC 2 cut(s) 830, 1272
AdeI CACNNNGTG 1 cut(s) 122
AfaI GTAC 3 cut(s) 56, 581, 948
AfiI CCNNNNNNNGG 4 cut(s) 526, 758, 921, 1390
AflII CTTAAG 1 cut(s) 44
AgsI TTSAA 7 cut(s) 143, 163, 180, 379, 612, 1109, 1352
AjnI CCWGG 2 cut(s) 490, 1387
AloI GAACNNNNNNTCC 2 cut(s) 650, 682
AluBI AGCT 6 cut(s) 86, 159, 237, 819, 842, 907
AluI AGCT 6 cut(s) 86, 159, 237, 819, 842, 907
Alw21I GWGCWC 1 cut(s) 88
AlwI GGATC 2 cut(s) 443, 885
Ama87I CYCGRG 1 cut(s) 1175
AoxI GGCC 5 cut(s) 405, 497, 552, 787, 1030
ApeKI GCWGC 2 cut(s) 190, 672
ApoI RAATTY 4 cut(s) 640, 1103, 1262, 1317
Asp700I GAANNNNTTC 1 cut(s) 175
AspLEI GCGC 1 cut(s) 94
AspS9I GGNCC 3 cut(s) 552, 1031, 1336
AsuHPI GGTGA 4 cut(s) 458, 480, 1145, 1160
AvaI CYCGRG 1 cut(s) 1175
AvaII GGWCC 1 cut(s) 1336
BaeGI GKGCMC 1 cut(s) 293
BalI TGGCCA 1 cut(s) 499
BanII GRGCYC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 88
BbvCI CCTCAGC 1 cut(s) 873
BbvI GCAGC 2 cut(s) 177, 684
BccI CCATC 4 cut(s) 489, 704, 1156, 1392
BciT130I CCWGG 2 cut(s) 492, 1389
BclI TGATCA 2 cut(s) 595, 1135
BfaI CTAG 1 cut(s) 483
BfmI CTRYAG 2 cut(s) 583, 843
BfrI CTTAAG 1 cut(s) 44
BfuAI ACCTGC 1 cut(s) 1049
BisI GCNGC 2 cut(s) 191, 673
BlsI GCNGC 2 cut(s) 192, 674
BmcAI AGTACT 1 cut(s) 581
Bme1390I CCNGG 2 cut(s) 492, 1389
Bme18I GGWCC 1 cut(s) 1336
BmeT110I CYCGRG 1 cut(s) 1175
BmgT120I GGNCC 3 cut(s) 552, 1031, 1336
BmiI GGNNCC 1 cut(s) 1092
BmrFI CCNGG 2 cut(s) 492, 1389
BmsI GCATC 4 cut(s) 202, 1132, 1207, 1274
BpmI CTGGAG 1 cut(s) 652
Bpu10I CCTNAGC 1 cut(s) 873
BsaAI YACGTR 1 cut(s) 119
BsaHI GRCGYC 2 cut(s) 830, 1272
BsaJI CCNNGG 3 cut(s) 570, 1176, 1388
BsaWI WCCGGW 1 cut(s) 1152
BsaXI ACNNNNNCTCC 2 cut(s) 650, 680
Bsc4I CCNNNNNNNGG 4 cut(s) 526, 758, 921, 1390
Bse1I ACTGG 1 cut(s) 360
BseBI CCWGG 2 cut(s) 492, 1389
BseDI CCNNGG 3 cut(s) 570, 1176, 1388
BseGI GGATG 4 cut(s) 500, 856, 1289, 1384
BseLI CCNNNNNNNGG 4 cut(s) 526, 758, 921, 1390
BseMII CTCAG 3 cut(s) 384, 864, 1109
BseNI ACTGG 1 cut(s) 360
BseSI GKGCMC 1 cut(s) 293
BseXI GCAGC 2 cut(s) 177, 684
Bsh1236I CGCG 1 cut(s) 1305
BshFI GGCC 5 cut(s) 407, 499, 554, 789, 1032
BsiHKAI GWGCWC 1 cut(s) 88
BsiHKCI CYCGRG 1 cut(s) 1175
BsiSI CCGG 1 cut(s) 1153
BslFI GGGAC 1 cut(s) 1202
BslI CCNNNNNNNGG 4 cut(s) 526, 758, 921, 1390
BsmFI GGGAC 1 cut(s) 1202
BsmI GAATGC 2 cut(s) 889, 1394
BsnI GGCC 5 cut(s) 407, 499, 554, 789, 1032
BsoBI CYCGRG 1 cut(s) 1175
Bsp1286I GDGCHC 2 cut(s) 88, 293
Bsp143I GATC 6 cut(s) 34, 448, 595, 877, 1135, 1342
BspACI CCGC 1 cut(s) 693
BspANI GGCC 5 cut(s) 407, 499, 554, 789, 1032
BspCNI CTCAG 3 cut(s) 383, 865, 1110
BspFNI CGCG 1 cut(s) 1305
BspHI TCATGA 2 cut(s) 507, 1201
BspLI GGNNCC 1 cut(s) 1092
BspMAI CTGCAG 1 cut(s) 587
BspMI ACCTGC 1 cut(s) 1049
BspPI GGATC 2 cut(s) 443, 885
BspTI CTTAAG 1 cut(s) 44
BsrI ACTGG 1 cut(s) 360
BssECI CCNNGG 3 cut(s) 570, 1176, 1388
BssMI GATC 6 cut(s) 34, 448, 595, 877, 1135, 1342
BssNAI GTATAC 1 cut(s) 625
BssNI GRCGYC 2 cut(s) 830, 1272
BssT1I CCWWGG 1 cut(s) 570
Bst1107I GTATAC 1 cut(s) 625
Bst2UI CCWGG 2 cut(s) 492, 1389
Bst4CI ACNGT 4 cut(s) 184, 474, 634, 897
Bst6I CTCTTC 1 cut(s) 138
BstACI GRCGYC 2 cut(s) 830, 1272
BstAFI CTTAAG 1 cut(s) 44
BstAPI GCANNNNNTGC 1 cut(s) 1064
BstBAI YACGTR 1 cut(s) 119
BstC8I GCNNGC 2 cut(s) 208, 1307
BstDEI CTNAG 6 cut(s) 200, 370, 873, 1118, 1313, 1324
BstEII GGTNACC 1 cut(s) 1148
BstF5I GGATG 4 cut(s) 500, 856, 1289, 1384
BstFNI CGCG 1 cut(s) 1305
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 6 cut(s) 37, 451, 598, 880, 1138, 1345
BstMBI GATC 6 cut(s) 34, 448, 595, 877, 1135, 1342
BstMWI GCNNNNNNNGC 3 cut(s) 795, 1064, 1364
BstNI CCWGG 2 cut(s) 492, 1389
BstPI GGTNACC 1 cut(s) 1148
BstSCI CCNGG 2 cut(s) 490, 1387
BstSFI CTRYAG 2 cut(s) 583, 843
BstSLI GKGCMC 1 cut(s) 293
BstUI CGCG 1 cut(s) 1305
BstV1I GCAGC 2 cut(s) 177, 684
BstXI CCANNNNNNTGG 1 cut(s) 917
BstZ17I GTATAC 1 cut(s) 625
BsuRI GGCC 5 cut(s) 407, 499, 554, 789, 1032
BtsCI GGATG 4 cut(s) 500, 856, 1289, 1384
BtsI GCAGTG 1 cut(s) 867
BtsIMutI CAGTG 2 cut(s) 867, 893
BveI ACCTGC 1 cut(s) 1049
Cac8I GCNNGC 2 cut(s) 208, 1307
CciI TCATGA 2 cut(s) 507, 1201
CfoI GCGC 1 cut(s) 94
Cfr13I GGNCC 3 cut(s) 552, 1031, 1336
CseI GACGC 2 cut(s) 819, 1311
Csp6I GTAC 3 cut(s) 55, 580, 947
CviAII CATG 4 cut(s) 508, 655, 826, 1202
CviQI GTAC 3 cut(s) 55, 580, 947
DdeI CTNAG 6 cut(s) 200, 370, 873, 1118, 1313, 1324
DpnI GATC 6 cut(s) 36, 450, 597, 879, 1137, 1344
DpnII GATC 6 cut(s) 34, 448, 595, 877, 1135, 1342
DraIII CACNNNGTG 1 cut(s) 122
EaeI YGGCCR 1 cut(s) 497
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
Ecl136II GAGCTC 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 570
Eco24I GRGCYC 1 cut(s) 88
Eco32I GATATC 1 cut(s) 361
Eco47I GGWCC 1 cut(s) 1336
Eco53kI GAGCTC 1 cut(s) 86
Eco57I CTGAAG 2 cut(s) 738, 993
Eco88I CYCGRG 1 cut(s) 1175
Eco91I GGTNACC 1 cut(s) 1148
EcoICRI GAGCTC 1 cut(s) 86
EcoO65I GGTNACC 1 cut(s) 1148
EcoRII CCWGG 2 cut(s) 490, 1387
EcoRV GATATC 1 cut(s) 361
EcoT14I CCWWGG 1 cut(s) 570
EcoT38I GRGCYC 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 570
FaeI CATG 4 cut(s) 511, 658, 829, 1205
FalI AAGNNNNNCTT 2 cut(s) 803, 835
FaqI GGGAC 1 cut(s) 1202
FatI CATG 4 cut(s) 507, 654, 825, 1201
FauI CCCGC 1 cut(s) 700
FbaI TGATCA 2 cut(s) 595, 1135
FblI GTMKAC 2 cut(s) 624, 1275
Fnu4HI GCNGC 2 cut(s) 191, 673
FokI GGATG 4 cut(s) 507, 863, 1296, 1371
FriOI GRGCYC 1 cut(s) 88
Fsp4HI GCNGC 2 cut(s) 191, 673
FspBI CTAG 1 cut(s) 483
GlaI GCGC 1 cut(s) 93
GluI GCNGC 2 cut(s) 191, 673
GsuI CTGGAG 1 cut(s) 652
HaeIII GGCC 5 cut(s) 407, 499, 554, 789, 1032
HapII CCGG 1 cut(s) 1153
HgaI GACGC 2 cut(s) 819, 1311
HhaI GCGC 1 cut(s) 94
Hin1I GRCGYC 2 cut(s) 830, 1272
Hin1II CATG 4 cut(s) 511, 658, 829, 1205
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HinfI GANTC 5 cut(s) 176, 441, 856, 962, 1352
HpaII CCGG 1 cut(s) 1153
HphI GGTGA 4 cut(s) 458, 480, 1145, 1160
Hpy166II GTNNAC 5 cut(s) 321, 488, 517, 625, 1276
Hpy188I TCNGA 7 cut(s) 373, 419, 440, 709, 1045, 1119, 1402
Hpy188III TCNNGA 6 cut(s) 79, 508, 1094, 1202, 1268, 1299
Hpy8I GTNNAC 5 cut(s) 321, 488, 517, 625, 1276
Hpy99I CGWCG 1 cut(s) 990
HpyAV CCTTC 3 cut(s) 33, 708, 762
HpyCH4III ACNGT 4 cut(s) 184, 474, 634, 897
HpyCH4IV ACGT 3 cut(s) 118, 152, 1272
HpyCH4V TGCA 7 cut(s) 193, 220, 352, 585, 1067, 1198, 1374
HpyF10VI GCNNNNNNNGC 3 cut(s) 795, 1064, 1364
HpyF3I CTNAG 6 cut(s) 200, 370, 873, 1118, 1313, 1324
HpySE526I ACGT 3 cut(s) 118, 152, 1272
Hsp92I GRCGYC 2 cut(s) 830, 1272
Hsp92II CATG 4 cut(s) 511, 658, 829, 1205
HspAI GCGC 1 cut(s) 92
Ksp22I TGATCA 2 cut(s) 595, 1135
Kzo9I GATC 6 cut(s) 34, 448, 595, 877, 1135, 1342
LmnI GCTCC 2 cut(s) 912, 1096
Lsp1109I GCAGC 2 cut(s) 177, 684
LweI GCATC 4 cut(s) 202, 1132, 1207, 1274
MaeI CTAG 1 cut(s) 483
MaeII ACGT 3 cut(s) 118, 152, 1272
MaeIII GTNAC 3 cut(s) 148, 1048, 1148
MalI GATC 6 cut(s) 36, 450, 597, 879, 1137, 1344
MboI GATC 6 cut(s) 34, 448, 595, 877, 1135, 1342
MboII GAAGA 4 cut(s) 155, 986, 1112, 1121
MfeI CAATTG 1 cut(s) 612
MhlI GDGCHC 2 cut(s) 88, 293
MlsI TGGCCA 1 cut(s) 499
MluNI TGGCCA 1 cut(s) 499
Mox20I TGGCCA 1 cut(s) 499
MroXI GAANNNNTTC 1 cut(s) 175
MscI TGGCCA 1 cut(s) 499
MseI TTAA 4 cut(s) 45, 563, 738, 792
MslI CAYNNNNRTG 2 cut(s) 493, 1044
Msp20I TGGCCA 1 cut(s) 499
MspCI CTTAAG 1 cut(s) 44
MspI CCGG 1 cut(s) 1153
MspR9I CCNGG 2 cut(s) 492, 1389
MunI CAATTG 1 cut(s) 612
Mva1269I GAATGC 2 cut(s) 889, 1394
MvaI CCWGG 2 cut(s) 492, 1389
MvnI CGCG 1 cut(s) 1305
MwoI GCNNNNNNNGC 3 cut(s) 795, 1064, 1364
NdeII GATC 6 cut(s) 34, 448, 595, 877, 1135, 1342
NlaIII CATG 4 cut(s) 511, 658, 829, 1205
NlaIV GGNNCC 1 cut(s) 1092
NmuCI GTSAC 2 cut(s) 148, 1148
PagI TCATGA 2 cut(s) 507, 1201
PaqCI CACCTGC 1 cut(s) 1049
PctI GAATGC 2 cut(s) 889, 1394
PdmI GAANNNNTTC 1 cut(s) 175
PfeI GAWTC 5 cut(s) 176, 441, 856, 962, 1352
PflMI CCANNNNNTGG 1 cut(s) 921
PkrI GCNGC 2 cut(s) 192, 674
Ppu21I YACGTR 1 cut(s) 119
Psp124BI GAGCTC 1 cut(s) 88
Psp6I CCWGG 2 cut(s) 490, 1387
PspEI GGTNACC 1 cut(s) 1148
PspGI CCWGG 2 cut(s) 490, 1387
PspN4I GGNNCC 1 cut(s) 1092
PspPI GGNCC 3 cut(s) 552, 1031, 1336
PstI CTGCAG 1 cut(s) 587
RsaI GTAC 3 cut(s) 56, 581, 948
RsaNI GTAC 3 cut(s) 55, 580, 947
RseI CAYNNNNRTG 2 cut(s) 493, 1044
SacI GAGCTC 1 cut(s) 88
SaqAI TTAA 4 cut(s) 45, 563, 738, 792
SatI GCNGC 2 cut(s) 191, 673
Sau3AI GATC 6 cut(s) 34, 448, 595, 877, 1135, 1342
Sau96I GGNCC 3 cut(s) 552, 1031, 1336
ScaI AGTACT 1 cut(s) 581
ScrFI CCNGG 2 cut(s) 492, 1389
SduI GDGCHC 2 cut(s) 88, 293
SfaNI GCATC 4 cut(s) 202, 1132, 1207, 1274
SfcI CTRYAG 2 cut(s) 583, 843
SinI GGWCC 1 cut(s) 1336
SmiMI CAYNNNNRTG 2 cut(s) 493, 1044
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
SsiI CCGC 1 cut(s) 693
SspMI CTAG 1 cut(s) 483
SstI GAGCTC 1 cut(s) 88
StyD4I CCNGG 2 cut(s) 490, 1387
StyI CCWWGG 1 cut(s) 570
TaaI ACNGT 4 cut(s) 184, 474, 634, 897
TaiI ACGT 3 cut(s) 121, 155, 1275
TaqI TCGA 5 cut(s) 37, 285, 1260, 1291, 1345
TatI WGTACW 2 cut(s) 54, 579
TfiI GAWTC 5 cut(s) 176, 441, 856, 962, 1352
Tru1I TTAA 4 cut(s) 45, 563, 738, 792
Tru9I TTAA 4 cut(s) 45, 563, 738, 792
TscAI CASTG 2 cut(s) 874, 900
TseFI GTSAC 2 cut(s) 148, 1148
TseI GCWGC 2 cut(s) 190, 672
Tsp45I GTSAC 2 cut(s) 148, 1148
TspDTI ATGAA 5 cut(s) 496, 633, 671, 1113, 1218
TspRI CASTG 2 cut(s) 874, 900
Van91I CCANNNNNTGG 1 cut(s) 921
Vha464I CTTAAG 1 cut(s) 44
VpaK11BI GGWCC 1 cut(s) 1336
XapI RAATTY 4 cut(s) 640, 1103, 1262, 1317
XmiI GTMKAC 2 cut(s) 624, 1275
XmnI GAANNNNTTC 1 cut(s) 175
XspI CTAG 1 cut(s) 483
ZraI GACGTC 1 cut(s) 1273
ZrmI AGTACT 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.