FvH4_6g20290

mediator of RNA polymerase II transcription subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
13875264 .. 13880848
5585 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g20290.t1

Sequence Viewer

Length: 1227 bp
ATGCAACAACAGCCACCGCCGCAGACGACGACTACTCCGCCGCCACCTTCGGTAGGGTCCACATCGGCGGAGGCACCGCCGAAGCAGGTGGCTTTGGCGATGGACCGCCTCGGCCAAGCCGGCCGCCTCATCGCCGACATCAGGCTCGGCGCCGACCGCCTTCTGGAAGCGATGTTCGTGGCGGCGCAGCCTCACCAGAGCACGAAGCCGCTCCACTTGTTCCTCAACGAAGACGCCTCCATGCGCCAGCACCTCCAGGACCTCCGCTCCATAGGAAGGCAGCTGGAAGAGTCTGGAGTGTTGAACGATGCTCTCCGGTCGCGAAGTAATTCGTGGGGATTGCACATGCCCTTGGTTTGTCCCGACGGCGCCGTCGTCGCTTATGCTTGGAAACGCCAGCTGGCTGGCCAGGCCGGTGCTTCTGCGGTGGACAGGACCAGGTTAGCGCTCAAGGCCTTCTCTGATCAGAAAAGAAGATTTTTTCCTCACCTGGATGATGGATTGGACGGTCAGAGCGATGAACCACTTTCAAAGAAACCGTGTGTTTCGCCATCATCGTCTACACACAATCAAGAAGAACTACTAGATTGCAAAACACTGTCGGAGATTTTAATGAGCTTGGAAAAGAAGGTGCCTAACTTGAAAATTTTCACCTATGAACGGTTGGATTGGTTAAAAAGAGCCTCTTCACTGCCAGCAAATGAGAGTCCACTGGAGACAGTAAAGGACCATAATTTTCATAGTTCAAGCAAGTTACGATCAACTTCATTGGTTGATGTTGCCACAGATAAGGTTGCTGTCATCGAGTTGTTGTTTCCTTCTGTCTTCAGAGCTGTAGTATCATTGCATCCTGCTGGTTCTATTGACCCAGATGCAGTAGCTTTCTTTTCTCCAGAAGAGGGAGGCAGTTACATTCATGCAAGAGGTTTTTCAGTTTATCATGTGTTCAAACATATCACGGAACATGCTGGTTTGGCCTTGCAGTATTTTCTTGGAGTTCAAGCGGAAACAGCTCTATATTCCCTTTTGCTCTGGATCTGCAGCTATCAAACTCTATTTACAAAAGTTTGCAGTAAGTGTGAACGACTGCTATCTATGGACCGACAATCAGCTTTATTGTTGCCTCCAGTTAATCGTCCTTACCGGCAGTTCTCCACATCAAATATATCCTCCGGTTTAAATCTTACCGAGACTTACCATGTAGGTTGTTTTACAGAGGAAAGGTGA

Protein Analysis

409

Amino Acids

45.16

Weight (kDa)

6.92

Isoelectric Point (pI)

55.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Med27 PF11571 311 - 403 4.5e-19 Mediator complex subunit 27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 76
AasI GACNNNNNNGTC 1 cut(s) 371
Acc36I ACCTGC 1 cut(s) 76
AccB1I GGYRCC 4 cut(s) 73, 149, 368, 631
AccBSI CCGCTC 2 cut(s) 211, 267
AccI GTMKAC 1 cut(s) 560
AccII CGCG 1 cut(s) 322
AclWI GGATC 1 cut(s) 1043
AcoI YGGCCR 3 cut(s) 112, 121, 406
AcsI RAATTY 1 cut(s) 645
AcuI CTGAAG 1 cut(s) 811
AcyI GRCGYC 3 cut(s) 150, 234, 369
AfeI AGCGCT 1 cut(s) 447
AfiI CCNNNNNNNGG 6 cut(s) 53, 141, 163, 276, 660, 899
AgsI TTSAA 6 cut(s) 304, 531, 643, 747, 949, 1001
AjnI CCWGG 4 cut(s) 255, 408, 437, 489
AloI GAACNNNNNNTCC 2 cut(s) 158, 190
AluBI AGCT 8 cut(s) 283, 400, 618, 833, 881, 1013, 1044, 1112
AluI AGCT 8 cut(s) 283, 400, 618, 833, 881, 1013, 1044, 1112
Alw21I GWGCWC 1 cut(s) 203
Alw26I GTCTC 2 cut(s) 710, 1184
AlwI GGATC 1 cut(s) 1043
Aor51HI AGCGCT 1 cut(s) 447
AoxI GGCC 6 cut(s) 112, 121, 406, 411, 453, 975
ApeKI GCWGC 3 cut(s) 187, 280, 1041
ApoI RAATTY 1 cut(s) 645
Asp700I GAANNNNTTC 2 cut(s) 328, 647
AspLEI GCGC 5 cut(s) 152, 187, 246, 371, 448
AspS9I GGNCC 6 cut(s) 57, 103, 259, 435, 727, 1099
AsuHPI GGTGA 3 cut(s) 185, 479, 643
AvaII GGWCC 6 cut(s) 57, 103, 259, 435, 727, 1099
BalI TGGCCA 1 cut(s) 408
BanI GGYRCC 4 cut(s) 73, 149, 368, 631
BbsI GAAGAC 2 cut(s) 237, 817
Bbv12I GWGCWC 1 cut(s) 203
BbvI GCAGC 3 cut(s) 199, 292, 1053
BccI CCATC 3 cut(s) 94, 491, 559
BceAI ACGGC 2 cut(s) 356, 382
BciT130I CCWGG 4 cut(s) 257, 410, 439, 491
BclI TGATCA 1 cut(s) 463
BcoDI GTCTC 2 cut(s) 710, 1184
BfaI CTAG 1 cut(s) 584
BfmI CTRYAG 2 cut(s) 834, 1039
BfoI RGCGCY 3 cut(s) 153, 372, 449
BfuAI ACCTGC 1 cut(s) 76
BglI GCCNNNNNGGC 1 cut(s) 120
BisI GCNGC 8 cut(s) 20, 41, 124, 183, 188, 209, 281, 1042
BlsI GCNGC 8 cut(s) 21, 42, 125, 184, 189, 210, 282, 1043
Bme1390I CCNGG 4 cut(s) 257, 410, 439, 491
Bme18I GGWCC 6 cut(s) 57, 103, 259, 435, 727, 1099
BmgT120I GGNCC 6 cut(s) 57, 103, 259, 435, 727, 1099
BmiI GGNNCC 5 cut(s) 58, 75, 151, 370, 633
BmrFI CCNGG 4 cut(s) 257, 410, 439, 491
BmsI GCATC 3 cut(s) 298, 856, 862
BpiI GAAGAC 2 cut(s) 237, 817
BpmI CTGGAG 5 cut(s) 239, 315, 734, 876, 1110
BpuEI CTTGAG 1 cut(s) 434
BsaHI GRCGYC 3 cut(s) 150, 234, 369
BsaJI CCNNGG 2 cut(s) 109, 351
BsaWI WCCGGW 2 cut(s) 315, 1172
BsaXI ACNNNNNCTCC 4 cut(s) 19, 49, 251, 281
Bsc4I CCNNNNNNNGG 6 cut(s) 53, 141, 163, 276, 660, 899
Bse118I RCCGGY 3 cut(s) 119, 413, 1143
Bse1I ACTGG 2 cut(s) 717, 1127
Bse3DI GCAATG 1 cut(s) 842
BseBI CCWGG 4 cut(s) 257, 410, 439, 491
BseDI CCNNGG 2 cut(s) 109, 351
BseGI GGATG 2 cut(s) 499, 847
BseLI CCNNNNNNNGG 6 cut(s) 53, 141, 163, 276, 660, 899
BseMI GCAATG 1 cut(s) 842
BseNI ACTGG 2 cut(s) 717, 1127
BseX3I CGGCCG 1 cut(s) 121
BseXI GCAGC 3 cut(s) 199, 292, 1053
Bsh1236I CGCG 1 cut(s) 322
Bsh1285I CGRYCG 3 cut(s) 124, 157, 320
BshFI GGCC 6 cut(s) 114, 123, 408, 413, 455, 977
BshNI GGYRCC 4 cut(s) 73, 149, 368, 631
BsiEI CGRYCG 3 cut(s) 124, 157, 320
BsiHKAI GWGCWC 1 cut(s) 203
BsiSI CCGG 5 cut(s) 120, 316, 414, 1144, 1173
BslFI GGGAC 1 cut(s) 345
BslI CCNNNNNNNGG 6 cut(s) 53, 141, 163, 276, 660, 899
BsmAI GTCTC 2 cut(s) 710, 1184
BsmFI GGGAC 1 cut(s) 345
BsnI GGCC 6 cut(s) 114, 123, 408, 413, 455, 977
Bsp1286I GDGCHC 1 cut(s) 203
Bsp143I GATC 3 cut(s) 463, 758, 1035
Bsp68I TCGCGA 1 cut(s) 322
BspANI GGCC 6 cut(s) 114, 123, 408, 413, 455, 977
BspFNI CGCG 1 cut(s) 322
BspLI GGNNCC 5 cut(s) 58, 75, 151, 370, 633
BspMAI CTGCAG 1 cut(s) 1043
BspMI ACCTGC 1 cut(s) 76
BspPI GGATC 1 cut(s) 1043
BspT107I GGYRCC 4 cut(s) 73, 149, 368, 631
BsrBI CCGCTC 2 cut(s) 211, 267
BsrDI GCAATG 1 cut(s) 842
BsrFI RCCGGY 3 cut(s) 119, 413, 1143
BsrI ACTGG 2 cut(s) 717, 1127
BssAI RCCGGY 3 cut(s) 119, 413, 1143
BssECI CCNNGG 2 cut(s) 109, 351
BssMI GATC 3 cut(s) 463, 758, 1035
BssNI GRCGYC 3 cut(s) 150, 234, 369
BssT1I CCWWGG 1 cut(s) 351
Bst2UI CCWGG 4 cut(s) 257, 410, 439, 491
Bst4CI ACNGT 5 cut(s) 509, 540, 600, 663, 721
Bst6I CTCTTC 3 cut(s) 282, 691, 891
BstACI GRCGYC 3 cut(s) 150, 234, 369
BstC8I GCNNGC 6 cut(s) 121, 248, 398, 402, 406, 696
BstENI CCTNNNNNAGG 1 cut(s) 51
BstF5I GGATG 2 cut(s) 499, 847
BstFNI CGCG 1 cut(s) 322
BstH2I RGCGCY 3 cut(s) 153, 372, 449
BstHHI GCGC 5 cut(s) 152, 187, 246, 371, 448
BstKTI GATC 3 cut(s) 466, 761, 1038
BstMAI GTCTC 2 cut(s) 710, 1184
BstMBI GATC 3 cut(s) 463, 758, 1035
BstMCI CGRYCG 3 cut(s) 124, 157, 320
BstMWI GCNNNNNNNGC 9 cut(s) 10, 19, 120, 156, 377, 410, 452, 974, 1010
BstNI CCWGG 4 cut(s) 257, 410, 439, 491
BstNSI RCATGY 2 cut(s) 349, 968
BstSCI CCNGG 4 cut(s) 255, 408, 437, 489
BstSFI CTRYAG 2 cut(s) 834, 1039
BstUI CGCG 1 cut(s) 322
BstV1I GCAGC 3 cut(s) 199, 292, 1053
BstV2I GAAGAC 2 cut(s) 237, 817
BstX2I RGATCY 1 cut(s) 1035
BstXI CCANNNNNNTGG 1 cut(s) 404
BstYI RGATCY 1 cut(s) 1035
BstZI CGGCCG 1 cut(s) 121
BsuRI GGCC 6 cut(s) 114, 123, 408, 413, 455, 977
BtgZI GCGATG 4 cut(s) 113, 115, 185, 531
BtsCI GGATG 2 cut(s) 499, 847
BtsI GCAGTG 1 cut(s) 689
BtsIMutI CAGTG 3 cut(s) 596, 689, 710
BtuMI TCGCGA 1 cut(s) 322
BveI ACCTGC 1 cut(s) 76
Cac8I GCNNGC 6 cut(s) 121, 248, 398, 402, 406, 696
CfoI GCGC 5 cut(s) 152, 187, 246, 371, 448
Cfr10I RCCGGY 3 cut(s) 119, 413, 1143
Cfr13I GGNCC 6 cut(s) 57, 103, 259, 435, 727, 1099
CseI GACGC 1 cut(s) 242
CsiI ACCWGGT 1 cut(s) 437
CviAII CATG 6 cut(s) 241, 346, 917, 941, 965, 1199
DinI GGCGCC 2 cut(s) 151, 370
DpnI GATC 3 cut(s) 465, 760, 1037
DpnII GATC 3 cut(s) 463, 758, 1035
DraI TTTAAA 1 cut(s) 1179
DrdI GACNNNNNNGTC 1 cut(s) 371
DseDI GACNNNNNNGTC 1 cut(s) 371
EaeI YGGCCR 3 cut(s) 112, 121, 406
EagI CGGCCG 1 cut(s) 121
Eam1104I CTCTTC 3 cut(s) 282, 691, 891
EarI CTCTTC 3 cut(s) 282, 691, 891
EciI GGCGGA 2 cut(s) 27, 83
EclXI CGGCCG 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 351
Eco147I AGGCCT 1 cut(s) 455
Eco47I GGWCC 6 cut(s) 57, 103, 259, 435, 727, 1099
Eco47III AGCGCT 1 cut(s) 447
Eco52I CGGCCG 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 811
EcoNI CCTNNNNNAGG 1 cut(s) 51
EcoO109I RGGNCCY 1 cut(s) 259
EcoRII CCWGG 4 cut(s) 255, 408, 437, 489
EcoT14I CCWWGG 1 cut(s) 351
EgeI GGCGCC 2 cut(s) 151, 370
EheI GGCGCC 2 cut(s) 151, 370
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 6 cut(s) 244, 349, 920, 944, 968, 1202
FalI AAGNNNNNCTT 2 cut(s) 670, 702
FaqI GGGAC 1 cut(s) 345
FatI CATG 6 cut(s) 240, 345, 916, 940, 964, 1198
FbaI TGATCA 1 cut(s) 463
FblI GTMKAC 1 cut(s) 560
Fnu4HI GCNGC 8 cut(s) 20, 41, 124, 183, 188, 209, 281, 1042
FokI GGATG 2 cut(s) 506, 834
Fsp4HI GCNGC 8 cut(s) 20, 41, 124, 183, 188, 209, 281, 1042
FspBI CTAG 1 cut(s) 584
GlaI GCGC 5 cut(s) 151, 186, 245, 370, 447
GluI GCNGC 8 cut(s) 20, 41, 124, 183, 188, 209, 281, 1042
GsuI CTGGAG 5 cut(s) 239, 315, 734, 876, 1110
HaeII RGCGCY 3 cut(s) 153, 372, 449
HaeIII GGCC 6 cut(s) 114, 123, 408, 413, 455, 977
HapII CCGG 5 cut(s) 120, 316, 414, 1144, 1173
HgaI GACGC 1 cut(s) 242
HhaI GCGC 5 cut(s) 152, 187, 246, 371, 448
Hin1I GRCGYC 3 cut(s) 150, 234, 369
Hin1II CATG 6 cut(s) 244, 349, 920, 944, 968, 1202
Hin6I GCGC 5 cut(s) 150, 185, 244, 369, 446
HinP1I GCGC 5 cut(s) 150, 185, 244, 369, 446
HinfI GANTC 2 cut(s) 290, 706
HpaII CCGG 5 cut(s) 120, 316, 414, 1144, 1173
HphI GGTGA 3 cut(s) 185, 479, 643
Hpy166II GTNNAC 5 cut(s) 60, 430, 561, 710, 1082
Hpy188I TCNGA 5 cut(s) 463, 468, 513, 604, 830
Hpy188III TCNNGA 7 cut(s) 164, 294, 321, 362, 572, 893, 1033
Hpy8I GTNNAC 5 cut(s) 60, 430, 561, 710, 1082
Hpy99I CGWCG 4 cut(s) 31, 368, 377, 380
HpyAV CCTTC 6 cut(s) 57, 170, 270, 466, 622, 828
HpyCH4III ACNGT 5 cut(s) 509, 540, 600, 663, 721
HpyCH4V TGCA 9 cut(s) 4, 343, 591, 847, 875, 920, 982, 1041, 1071
HpyF10VI GCNNNNNNNGC 9 cut(s) 10, 19, 120, 156, 377, 410, 452, 974, 1010
Hsp92I GRCGYC 3 cut(s) 150, 234, 369
Hsp92II CATG 6 cut(s) 244, 349, 920, 944, 968, 1202
HspAI GCGC 5 cut(s) 150, 185, 244, 369, 446
KasI GGCGCC 2 cut(s) 149, 368
KroI GCCGGC 1 cut(s) 119
KroNI GCCGGC 1 cut(s) 121
Ksp22I TGATCA 1 cut(s) 463
Kzo9I GATC 3 cut(s) 463, 758, 1035
LmnI GCTCC 2 cut(s) 216, 272
Lsp1109I GCAGC 3 cut(s) 199, 292, 1053
LweI GCATC 3 cut(s) 298, 856, 862
MabI ACCWGGT 1 cut(s) 437
MaeI CTAG 1 cut(s) 584
MaeIII GTNAC 2 cut(s) 753, 908
MalI GATC 3 cut(s) 465, 760, 1037
MbiI CCGCTC 2 cut(s) 211, 267
MboI GATC 3 cut(s) 463, 758, 1035
MboII GAAGA 7 cut(s) 242, 299, 486, 587, 678, 817, 908
MflI RGATCY 1 cut(s) 1035
MhlI GDGCHC 1 cut(s) 203
MlsI TGGCCA 1 cut(s) 408
MluCI AATT 3 cut(s) 328, 645, 733
MluNI TGGCCA 1 cut(s) 408
Mly113I GGCGCC 2 cut(s) 150, 369
MlyI GAGTC 2 cut(s) 299, 715
MmeI TCCRAC 2 cut(s) 582, 645
Mox20I TGGCCA 1 cut(s) 408
MroNI GCCGGC 1 cut(s) 119
MroXI GAANNNNTTC 2 cut(s) 328, 647
MscI TGGCCA 1 cut(s) 408
MseI TTAA 4 cut(s) 611, 674, 1131, 1178
MslI CAYNNNNRTG 1 cut(s) 492
Msp20I TGGCCA 1 cut(s) 408
MspA1I CMGCKG 2 cut(s) 283, 400
MspI CCGG 5 cut(s) 120, 316, 414, 1144, 1173
MspR9I CCNGG 4 cut(s) 257, 410, 439, 491
MvaI CCWGG 4 cut(s) 257, 410, 439, 491
MvnI CGCG 1 cut(s) 322
MwoI GCNNNNNNNGC 9 cut(s) 10, 19, 120, 156, 377, 410, 452, 974, 1010
NaeI GCCGGC 1 cut(s) 121
NarI GGCGCC 2 cut(s) 150, 369
NdeII GATC 3 cut(s) 463, 758, 1035
NgoMIV GCCGGC 1 cut(s) 119
NlaIII CATG 6 cut(s) 244, 349, 920, 944, 968, 1202
NlaIV GGNNCC 5 cut(s) 58, 75, 151, 370, 633
NmeAIII GCCGAG 2 cut(s) 90, 126
NruI TCGCGA 1 cut(s) 322
NspI RCATGY 2 cut(s) 349, 968
PaqCI CACCTGC 1 cut(s) 76
PceI AGGCCT 1 cut(s) 455
PcsI WCGNNNNNNNCGW 3 cut(s) 372, 513, 554
PdiI GCCGGC 1 cut(s) 121
PdmI GAANNNNTTC 2 cut(s) 328, 647
PfoI TCCNGGA 1 cut(s) 255
PkrI GCNGC 8 cut(s) 21, 42, 125, 184, 189, 210, 282, 1043
PleI GAGTC 2 cut(s) 298, 714
PluTI GGCGCC 2 cut(s) 153, 372
PpsI GAGTC 2 cut(s) 298, 714
PpuMI RGGWCCY 1 cut(s) 259
Psp5II RGGWCCY 1 cut(s) 259
Psp6I CCWGG 4 cut(s) 255, 408, 437, 489
PspGI CCWGG 4 cut(s) 255, 408, 437, 489
PspN4I GGNNCC 5 cut(s) 58, 75, 151, 370, 633
PspPI GGNCC 6 cut(s) 57, 103, 259, 435, 727, 1099
PspPPI RGGWCCY 1 cut(s) 259
PstI CTGCAG 1 cut(s) 1043
PsuI RGATCY 1 cut(s) 1035
PvuII CAGCTG 2 cut(s) 283, 400
RruI TCGCGA 1 cut(s) 322
RseI CAYNNNNRTG 1 cut(s) 492
SaqAI TTAA 4 cut(s) 611, 674, 1131, 1178
SatI GCNGC 8 cut(s) 20, 41, 124, 183, 188, 209, 281, 1042
Sau3AI GATC 3 cut(s) 463, 758, 1035
Sau96I GGNCC 6 cut(s) 57, 103, 259, 435, 727, 1099
SchI GAGTC 2 cut(s) 299, 715
ScrFI CCNGG 4 cut(s) 257, 410, 439, 491
SduI GDGCHC 1 cut(s) 203
SexAI ACCWGGT 1 cut(s) 437
SfaNI GCATC 3 cut(s) 298, 856, 862
SfcI CTRYAG 2 cut(s) 834, 1039
SfiI GGCCNNNNNGGCC 1 cut(s) 120
SfoI GGCGCC 2 cut(s) 151, 370
SinI GGWCC 6 cut(s) 57, 103, 259, 435, 727, 1099
SmiMI CAYNNNNRTG 1 cut(s) 492
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
Sse9I AATT 3 cut(s) 328, 645, 733
SseBI AGGCCT 1 cut(s) 455
SspDI GGCGCC 2 cut(s) 149, 368
SspMI CTAG 1 cut(s) 584
StuI AGGCCT 1 cut(s) 455
StyD4I CCNGG 4 cut(s) 255, 408, 437, 489
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 5 cut(s) 509, 540, 600, 663, 721
TaqI TCGA 1 cut(s) 804
TaqII GACCGA 1 cut(s) 1116
TasI AATT 3 cut(s) 328, 645, 733
TauI GCSGC 5 cut(s) 22, 43, 126, 185, 211
Tru1I TTAA 4 cut(s) 611, 674, 1131, 1178
Tru9I TTAA 4 cut(s) 611, 674, 1131, 1178
TscAI CASTG 3 cut(s) 603, 696, 717
TseI GCWGC 3 cut(s) 187, 280, 1041
TspDTI ATGAA 5 cut(s) 534, 672, 728, 756, 905
TspGWI ACGGA 1 cut(s) 974
TspRI CASTG 3 cut(s) 603, 696, 717
VpaK11BI GGWCC 6 cut(s) 57, 103, 259, 435, 727, 1099
XagI CCTNNNNNAGG 1 cut(s) 51
XapI RAATTY 1 cut(s) 645
XceI RCATGY 2 cut(s) 349, 968
XmiI GTMKAC 1 cut(s) 560
XmnI GAANNNNTTC 2 cut(s) 328, 647
XspI CTAG 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.