Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000539.1

Orthogroup ID

OG0004370

Physical Location & Seq

Genomic Coordinates Forward (+)

427143 .. 430422

Gene Structure 3280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000539.1_g000094.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

atgattctctccggtcgcgaagtaattcttggggactgcacatgccgttggtttgtcccgacggcgccgtcgtcgcctatgcttggaaacggcagctcgccggccaggccggcgcgtccgcagtggacaggaccaggaaggcagctagaagagtctggagttctgaatgattctctccggtcgcgaagtaattcttggggactgcacatgccgttggtttgtcccgacggcgccgtcgtcgcctatgcttggaaacggcagctcgccggccaggccggcgcgtccgcagtggacaggaccaggttagctctgaaggccttcactgatcagaaaagaagattttttcctcaccttgatgatggatcggacagtcagagtgacgaaccagtttcaaagaaaccgtgtgtttccccatcattgactacacacaatcaagaagagctactagattgtaagacactatcagaggttttaatgagcttggaaaagaaggtgcctaacttgaaagttttcacctacgaacgattggattggttaaaaagagcatcgtcactgccagctaatgagaatccactggaaacagtgaaggaccatagttttcatagttcgagtaagttacgagctactccactggctgatgttgcgatagataaggttgctgtcatcgagttgctgtttccgtctgtcttcagagctgtagtatcattgcatcctgctggttctattgacccagacgcagtagctttcttttctccagaagagggaggcagctacattcatgcaagaggtttttcagtttatcatgtgtttaaacatatcacggaacatgctggtttggccttgcagtactttcttggagttcaagctgaaacagctctatattcccttttgctctggatctgcagctaccaaactctatttacaaaagtttgcagtaagtgcgaacgactgctagctatggaccgacaatcagctttactgttgcctccggttaatcgtccttaccggcagttctccacatcaaatatatcctccagtttaaatcttaccgagacttaccatgtaggttgttttacggaggaaaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko04919 map04919

Pfam Domains

Protein Families

Med27

Protein Analysis

362

Amino Acids

40.1

Weight (kDa)

7.62

Isoelectric Point (pI)

57.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09180 AT3G09180 AT3G09180
fragaria_vesca	FvH4_6g20290 FvH4_6g20290 FvH4_6g20290 FvH4_6g20290 FvH4_6g20290
malus_domestica	MD14G1038600.v1.1
prunus_persica	Prupe.7G094800_v2.0.a1 Prupe.7G094800_v2.0.a1 Prupe.7G094800_v2.0.a1
pyrus_communis	pycom12g03430
rosa_chinensis	RchiOBHm_Chr1g0331111 RchiOBHm_Chr1g0331121 RchiOBHm_Chr3g0475881
rosa_laevigata	RLG00000023803 RLG00000029753
rosa_multiflora	Rmu_sc0000539.1_g000094
rosa_roxburghii	Rroxscaffold_4G00319450 Rroxscaffold_6G00405760
rosa_rugosa	Rorug01G0093700 Rorug01G0093700 Rorug03G0151900
rosa_samantha	Rh1AG114200 Rh3AG202000 Rh3BG232500 Rh3CG227100 Rh3DG227600
rosa_wichuraiana	Rw1G009280 Rw3G018390 Rw3G018420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	67, 233
AccB1I	GGYRCC	3 cut(s)	64, 230, 493
AccII	CGCG	4 cut(s)	18, 115, 184, 281
AciI	CCGC	2 cut(s)	119, 285
AclWI	GGATC	2 cut(s)	370, 905
AcoI	YGGCCR	2 cut(s)	102, 268
AcuI	CTGAAG	2 cut(s)	332, 673
AcyI	GRCGYC	2 cut(s)	65, 231
AfaI	GTAC	1 cut(s)	848
AfiI	CCNNNNNNNGG	3 cut(s)	83, 249, 761
AgsI	TTSAA	3 cut(s)	393, 505, 863
AjnI	CCWGG	4 cut(s)	104, 133, 270, 299
AjuI	GAANNNNNNNTTGG	4 cut(s)	12, 44, 178, 210
Alw26I	GTCTC	1 cut(s)	1046
AlwI	GGATC	2 cut(s)	370, 905
AoxI	GGCC	6 cut(s)	102, 107, 268, 273, 315, 837
ApeKI	GCWGC	5 cut(s)	93, 142, 259, 768, 903
Asp700I	GAANNNNTTC	4 cut(s)	24, 190, 317, 509
AspLEI	GCGC	4 cut(s)	67, 115, 233, 281
AspS9I	GGNCC	4 cut(s)	131, 297, 589, 961
AsuHPI	GGTGA	2 cut(s)	341, 505
AsuNHI	GCTAGC	1 cut(s)	952
AvaII	GGWCC	4 cut(s)	131, 297, 589, 961
BanI	GGYRCC	3 cut(s)	64, 230, 493
BbsI	GAAGAC	1 cut(s)	679
BbvI	GCAGC	5 cut(s)	105, 154, 271, 780, 915
BccI	CCATC	2 cut(s)	353, 421
BceAI	ACGGC	8 cut(s)	30, 52, 78, 106, 196, 218, 244, 272
BciT130I	CCWGG	4 cut(s)	106, 135, 272, 301
BclI	TGATCA	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	1046
BfaI	CTAG	3 cut(s)	146, 446, 953
BfmI	CTRYAG	2 cut(s)	696, 901
BfoI	RGCGCY	2 cut(s)	68, 234
BglI	GCCNNNNNGGC	4 cut(s)	106, 110, 272, 276
BisI	GCNGC	5 cut(s)	94, 143, 260, 769, 904
BlsI	GCNGC	5 cut(s)	95, 144, 261, 770, 905
BmcAI	AGTACT	1 cut(s)	848
Bme1390I	CCNGG	4 cut(s)	106, 135, 272, 301
Bme18I	GGWCC	4 cut(s)	131, 297, 589, 961
BmgT120I	GGNCC	4 cut(s)	131, 297, 589, 961
BmiI	GGNNCC	3 cut(s)	66, 232, 495
BmrFI	CCNGG	4 cut(s)	106, 135, 272, 301
BmsI	GCATC	2 cut(s)	554, 718
BmtI	GCTAGC	1 cut(s)	956
BpiI	GAAGAC	1 cut(s)	679
BpmI	CTGGAG	3 cut(s)	177, 738, 1018
BsaHI	GRCGYC	2 cut(s)	65, 231
BsaWI	WCCGGW	3 cut(s)	11, 177, 988
BsaXI	ACNNNNNCTCC	1 cut(s)	1070
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 249, 761
Bse118I	RCCGGY	5 cut(s)	100, 109, 266, 275, 1005
Bse1I	ACTGG	4 cut(s)	386, 579, 636, 1035
Bse3DI	GCAATG	1 cut(s)	704
BseBI	CCWGG	4 cut(s)	106, 135, 272, 301
BseGI	GGATG	1 cut(s)	709
BseLI	CCNNNNNNNGG	3 cut(s)	83, 249, 761
BseMI	GCAATG	1 cut(s)	704
BseNI	ACTGG	4 cut(s)	386, 579, 636, 1035
BseXI	GCAGC	5 cut(s)	105, 154, 271, 780, 915
BsgI	GTGCAG	2 cut(s)	22, 188
Bsh1236I	CGCG	4 cut(s)	18, 115, 184, 281
Bsh1285I	CGRYCG	2 cut(s)	16, 182
BshFI	GGCC	6 cut(s)	104, 109, 270, 275, 317, 839
BshNI	GGYRCC	3 cut(s)	64, 230, 493
BsiEI	CGRYCG	2 cut(s)	16, 182
BsiSI	CCGG	8 cut(s)	12, 101, 110, 178, 267, 276, 989, 1006
BslFI	GGGAC	4 cut(s)	41, 47, 207, 213
BslI	CCNNNNNNNGG	3 cut(s)	83, 249, 761
BsmAI	GTCTC	1 cut(s)	1046
BsmFI	GGGAC	4 cut(s)	41, 47, 207, 213
BsnI	GGCC	6 cut(s)	104, 109, 270, 275, 317, 839
Bsp143I	GATC	3 cut(s)	325, 362, 897
Bsp68I	TCGCGA	2 cut(s)	18, 184
BspACI	CCGC	2 cut(s)	119, 285
BspANI	GGCC	6 cut(s)	104, 109, 270, 275, 317, 839
BspFNI	CGCG	4 cut(s)	18, 115, 184, 281
BspLI	GGNNCC	3 cut(s)	66, 232, 495
BspMAI	CTGCAG	1 cut(s)	905
BspOI	GCTAGC	1 cut(s)	956
BspPI	GGATC	2 cut(s)	370, 905
BspQI	GCTCTTC	1 cut(s)	432
BspT107I	GGYRCC	3 cut(s)	64, 230, 493
BsrDI	GCAATG	1 cut(s)	704
BsrFI	RCCGGY	5 cut(s)	100, 109, 266, 275, 1005
BsrI	ACTGG	4 cut(s)	386, 579, 636, 1035
BssAI	RCCGGY	5 cut(s)	100, 109, 266, 275, 1005
BssMI	GATC	3 cut(s)	325, 362, 897
BssNI	GRCGYC	2 cut(s)	65, 231
Bst2UI	CCWGG	4 cut(s)	106, 135, 272, 301
Bst4CI	ACNGT	4 cut(s)	371, 402, 583, 981
Bst6I	CTCTTC	3 cut(s)	144, 432, 753
BstACI	GRCGYC	2 cut(s)	65, 231
BstAPI	GCANNNNNTGC	1 cut(s)	939
BstC8I	GCNNGC	8 cut(s)	98, 102, 111, 264, 268, 277, 558, 954
BstF5I	GGATG	1 cut(s)	709
BstFNI	CGCG	4 cut(s)	18, 115, 184, 281
BstH2I	RGCGCY	2 cut(s)	68, 234
BstHHI	GCGC	4 cut(s)	67, 115, 233, 281
BstKTI	GATC	3 cut(s)	328, 365, 900
BstMAI	GTCTC	1 cut(s)	1046
BstMBI	GATC	3 cut(s)	325, 362, 897
BstMCI	CGRYCG	2 cut(s)	16, 182
BstNI	CCWGG	4 cut(s)	106, 135, 272, 301
BstNSI	RCATGY	3 cut(s)	45, 211, 830
BstSCI	CCNGG	4 cut(s)	104, 133, 270, 299
BstSFI	CTRYAG	2 cut(s)	696, 901
BstUI	CGCG	4 cut(s)	18, 115, 184, 281
BstV1I	GCAGC	5 cut(s)	105, 154, 271, 780, 915
BstV2I	GAAGAC	1 cut(s)	679
BstX2I	RGATCY	1 cut(s)	897
BstYI	RGATCY	1 cut(s)	897
BsuRI	GGCC	6 cut(s)	104, 109, 270, 275, 317, 839
BtsCI	GGATG	1 cut(s)	709
BtsI	GCAGTG	3 cut(s)	128, 294, 551
BtsIMutI	CAGTG	7 cut(s)	128, 294, 321, 551, 572, 588, 629
BtuMI	TCGCGA	2 cut(s)	18, 184
Cac8I	GCNNGC	8 cut(s)	98, 102, 111, 264, 268, 277, 558, 954
CfoI	GCGC	4 cut(s)	67, 115, 233, 281
Cfr10I	RCCGGY	5 cut(s)	100, 109, 266, 275, 1005
Cfr13I	GGNCC	4 cut(s)	131, 297, 589, 961
CseI	GACGC	3 cut(s)	104, 270, 743
CsiI	ACCWGGT	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	847
CviAII	CATG	6 cut(s)	42, 208, 779, 803, 827, 1061
CviQI	GTAC	1 cut(s)	847
DinI	GGCGCC	2 cut(s)	66, 232
DpnI	GATC	3 cut(s)	327, 364, 899
DpnII	GATC	3 cut(s)	325, 362, 897
DraI	TTTAAA	2 cut(s)	811, 1041
DrdI	GACNNNNNNGTC	2 cut(s)	67, 233
DseDI	GACNNNNNNGTC	2 cut(s)	67, 233
EaeI	YGGCCR	2 cut(s)	102, 268
Eam1104I	CTCTTC	3 cut(s)	144, 432, 753
EarI	CTCTTC	3 cut(s)	144, 432, 753
Eco147I	AGGCCT	1 cut(s)	317
Eco47I	GGWCC	4 cut(s)	131, 297, 589, 961
Eco57I	CTGAAG	2 cut(s)	332, 673
EcoRII	CCWGG	4 cut(s)	104, 133, 270, 299
EgeI	GGCGCC	2 cut(s)	66, 232
EheI	GGCGCC	2 cut(s)	66, 232
FaeI	CATG	6 cut(s)	45, 211, 782, 806, 830, 1064
FalI	AAGNNNNNCTT	4 cut(s)	12, 44, 178, 210
FaqI	GGGAC	4 cut(s)	41, 47, 207, 213
FatI	CATG	6 cut(s)	41, 207, 778, 802, 826, 1060
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	5 cut(s)	94, 143, 260, 769, 904
FokI	GGATG	1 cut(s)	696
Fsp4HI	GCNGC	5 cut(s)	94, 143, 260, 769, 904
FspBI	CTAG	3 cut(s)	146, 446, 953
GlaI	GCGC	4 cut(s)	66, 114, 232, 280
GluI	GCNGC	5 cut(s)	94, 143, 260, 769, 904
GsuI	CTGGAG	3 cut(s)	177, 738, 1018
HaeII	RGCGCY	2 cut(s)	68, 234
HaeIII	GGCC	6 cut(s)	104, 109, 270, 275, 317, 839
HapII	CCGG	8 cut(s)	12, 101, 110, 178, 267, 276, 989, 1006
HgaI	GACGC	3 cut(s)	104, 270, 743
HhaI	GCGC	4 cut(s)	67, 115, 233, 281
Hin1I	GRCGYC	2 cut(s)	65, 231
Hin1II	CATG	6 cut(s)	45, 211, 782, 806, 830, 1064
Hin6I	GCGC	4 cut(s)	65, 113, 231, 279
HinP1I	GCGC	4 cut(s)	65, 113, 231, 279
HinfI	GANTC	4 cut(s)	4, 152, 170, 568
HpaII	CCGG	8 cut(s)	12, 101, 110, 178, 267, 276, 989, 1006
HphI	GGTGA	2 cut(s)	341, 505
Hpy166II	GTNNAC	2 cut(s)	126, 292
Hpy188I	TCNGA	7 cut(s)	165, 312, 330, 367, 375, 466, 692
Hpy188III	TCNNGA	8 cut(s)	17, 58, 156, 183, 224, 434, 755, 895
Hpy8I	GTNNAC	2 cut(s)	126, 292
Hpy99I	CGWCG	6 cut(s)	64, 73, 76, 230, 239, 242
HpyAV	CCTTC	5 cut(s)	132, 307, 328, 484, 580
HpyCH4III	ACNGT	4 cut(s)	371, 402, 583, 981
HpyCH4V	TGCA	7 cut(s)	39, 205, 709, 782, 844, 903, 933
Hsp92I	GRCGYC	2 cut(s)	65, 231
Hsp92II	CATG	6 cut(s)	45, 211, 782, 806, 830, 1064
HspAI	GCGC	4 cut(s)	65, 113, 231, 279
KasI	GGCGCC	2 cut(s)	64, 230
KroI	GCCGGC	4 cut(s)	100, 109, 266, 275
KroNI	GCCGGC	4 cut(s)	102, 111, 268, 277
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	325, 362, 897
LguI	GCTCTTC	1 cut(s)	432
Lsp1109I	GCAGC	5 cut(s)	105, 154, 271, 780, 915
LweI	GCATC	2 cut(s)	554, 718
MabI	ACCWGGT	1 cut(s)	299
MaeI	CTAG	3 cut(s)	146, 446, 953
MaeIII	GTNAC	3 cut(s)	377, 549, 615
MalI	GATC	3 cut(s)	327, 364, 899
MboI	GATC	3 cut(s)	325, 362, 897
MboII	GAAGA	5 cut(s)	161, 348, 449, 679, 770
MflI	RGATCY	1 cut(s)	897
MluCI	AATT	2 cut(s)	24, 190
Mly113I	GGCGCC	2 cut(s)	65, 231
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	8 cut(s)	357, 460, 754, 758, 779, 996, 1042, 1072
MroNI	GCCGGC	4 cut(s)	100, 109, 266, 275
MroXI	GAANNNNTTC	4 cut(s)	24, 190, 317, 509
MseI	TTAA	5 cut(s)	473, 536, 810, 993, 1040
MslI	CAYNNNNRTG	1 cut(s)	354
MspI	CCGG	8 cut(s)	12, 101, 110, 178, 267, 276, 989, 1006
MspR9I	CCNGG	4 cut(s)	106, 135, 272, 301
MssI	GTTTAAAC	1 cut(s)	811
MvaI	CCWGG	4 cut(s)	106, 135, 272, 301
MvnI	CGCG	4 cut(s)	18, 115, 184, 281
NaeI	GCCGGC	4 cut(s)	102, 111, 268, 277
NarI	GGCGCC	2 cut(s)	65, 231
NdeII	GATC	3 cut(s)	325, 362, 897
NgoMIV	GCCGGC	4 cut(s)	100, 109, 266, 275
NheI	GCTAGC	1 cut(s)	952
NlaIII	CATG	6 cut(s)	45, 211, 782, 806, 830, 1064
NlaIV	GGNNCC	3 cut(s)	66, 232, 495
NmuCI	GTSAC	2 cut(s)	377, 549
NruI	TCGCGA	2 cut(s)	18, 184
NspI	RCATGY	3 cut(s)	45, 211, 830
PceI	AGGCCT	1 cut(s)	317
PciSI	GCTCTTC	1 cut(s)	432
PcsI	WCGNNNNNNNCGW	2 cut(s)	68, 234
PdiI	GCCGGC	4 cut(s)	102, 111, 268, 277
PdmI	GAANNNNTTC	4 cut(s)	24, 190, 317, 509
PfeI	GAWTC	3 cut(s)	4, 170, 568
PkrI	GCNGC	5 cut(s)	95, 144, 261, 770, 905
PleI	GAGTC	1 cut(s)	160
PluTI	GGCGCC	2 cut(s)	68, 234
PmeI	GTTTAAAC	1 cut(s)	811
PpsI	GAGTC	1 cut(s)	160
Psp6I	CCWGG	4 cut(s)	104, 133, 270, 299
PspGI	CCWGG	4 cut(s)	104, 133, 270, 299
PspN4I	GGNNCC	3 cut(s)	66, 232, 495
PspPI	GGNCC	4 cut(s)	131, 297, 589, 961
PstI	CTGCAG	1 cut(s)	905
PsuI	RGATCY	1 cut(s)	897
RruI	TCGCGA	2 cut(s)	18, 184
RsaI	GTAC	1 cut(s)	848
RsaNI	GTAC	1 cut(s)	847
RseI	CAYNNNNRTG	1 cut(s)	354
SapI	GCTCTTC	1 cut(s)	432
SaqAI	TTAA	5 cut(s)	473, 536, 810, 993, 1040
SatI	GCNGC	5 cut(s)	94, 143, 260, 769, 904
Sau3AI	GATC	3 cut(s)	325, 362, 897
Sau96I	GGNCC	4 cut(s)	131, 297, 589, 961
ScaI	AGTACT	1 cut(s)	848
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	4 cut(s)	106, 135, 272, 301
SexAI	ACCWGGT	1 cut(s)	299
SfaNI	GCATC	2 cut(s)	554, 718
SfcI	CTRYAG	2 cut(s)	696, 901
SfoI	GGCGCC	2 cut(s)	66, 232
SinI	GGWCC	4 cut(s)	131, 297, 589, 961
SmiMI	CAYNNNNRTG	1 cut(s)	354
Sse9I	AATT	2 cut(s)	24, 190
SseBI	AGGCCT	1 cut(s)	317
SsiI	CCGC	2 cut(s)	119, 285
SspDI	GGCGCC	2 cut(s)	64, 230
SspMI	CTAG	3 cut(s)	146, 446, 953
StuI	AGGCCT	1 cut(s)	317
StyD4I	CCNGG	4 cut(s)	104, 133, 270, 299
TaaI	ACNGT	4 cut(s)	371, 402, 583, 981
TaqI	TCGA	2 cut(s)	608, 666
TaqII	GACCGA	1 cut(s)	978
TasI	AATT	2 cut(s)	24, 190
TatI	WGTACW	1 cut(s)	846
TfiI	GAWTC	3 cut(s)	4, 170, 568
Tru1I	TTAA	5 cut(s)	473, 536, 810, 993, 1040
Tru9I	TTAA	5 cut(s)	473, 536, 810, 993, 1040
TscAI	CASTG	7 cut(s)	128, 294, 328, 558, 579, 588, 636
TseFI	GTSAC	2 cut(s)	377, 549
TseI	GCWGC	5 cut(s)	93, 142, 259, 768, 903
Tsp45I	GTSAC	2 cut(s)	377, 549
TspDTI	ATGAA	2 cut(s)	590, 767
TspGWI	ACGGA	2 cut(s)	669, 836
TspRI	CASTG	7 cut(s)	128, 294, 328, 558, 579, 588, 636
VpaK11BI	GGWCC	4 cut(s)	131, 297, 589, 961
XceI	RCATGY	3 cut(s)	45, 211, 830
XmnI	GAANNNNTTC	4 cut(s)	24, 190, 317, 509
XspI	CTAG	3 cut(s)	146, 446, 953
ZrmI	AGTACT	1 cut(s)	848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.