Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004370

Physical Location & Seq

Genomic Coordinates Forward (+)

20915818 .. 20916823

Gene Structure 1006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56016

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGCAACAACAGCCACCGCAGACGACGACGACTACTACTCCGCCAGCTTCGGTAGGGTCCACGGCGGCGGAGGCGCCGCCGAAGCAGGTGGCTTTGGCGATGGACCGCCTCGGCCAAGCCGGTCGCCTCATCGCGGACATTAGGCTCGGCGCCGACCGCCTTCTGGAGGCCCTGTTCGTGGCGGCGCAGCCTCACCAGAGCACCAAGCCGCTCCACTTGTTCCTCAATGAAGACACCTCCATGCGCCAGCACCTCCAAGACCTCCGCTCCATAGGAAGGCAGCTAGAAGAGTCTGGAGTTCTGAATGATTCTCTCCGGTCGCGGAGCAATTCTTGGGGACTGCACATGCCGTTGGTTTGTCCCGACGGCGCCGTCGTCGCCTATGCTTGGAAACGGCAGCTCGCCGGTCAGGCCGGCGCGTCCGCAGTGGACAGGACCAGGTTAGTTAGCTCTGAAGGCCTTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko04919 map04919

Pfam Domains

Protein Families

Med27

Protein Analysis

155

Amino Acids

16.71

Weight (kDa)

8.02

Isoelectric Point (pI)

52.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09180 AT3G09180 AT3G09180
fragaria_vesca	FvH4_6g20290 FvH4_6g20290 FvH4_6g20290 FvH4_6g20290 FvH4_6g20290
malus_domestica	MD14G1038600.v1.1
prunus_persica	Prupe.7G094800_v2.0.a1 Prupe.7G094800_v2.0.a1 Prupe.7G094800_v2.0.a1
pyrus_communis	pycom12g03430
rosa_chinensis	RchiOBHm_Chr1g0331111 RchiOBHm_Chr1g0331121 RchiOBHm_Chr3g0475881
rosa_laevigata	RLG00000023803 RLG00000029753
rosa_multiflora	Rmu_sc0000539.1_g000094
rosa_roxburghii	Rroxscaffold_4G00319450 Rroxscaffold_6G00405760
rosa_rugosa	Rorug01G0093700 Rorug01G0093700 Rorug03G0151900
rosa_samantha	Rh1AG114200 Rh3AG202000 Rh3BG232500 Rh3CG227100 Rh3DG227600
rosa_wichuraiana	Rw1G009280 Rw3G018390 Rw3G018420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	76
AasI	GACNNNNNNGTC	1 cut(s)	371
Acc36I	ACCTGC	1 cut(s)	76
AccB1I	GGYRCC	3 cut(s)	73, 149, 368
AccBSI	CCGCTC	2 cut(s)	211, 267
AccII	CGCG	3 cut(s)	134, 322, 419
AcoI	YGGCCR	1 cut(s)	112
AcyI	GRCGYC	3 cut(s)	74, 150, 369
AfiI	CCNNNNNNNGG	6 cut(s)	133, 163, 166, 178, 276, 387
AjnI	CCWGG	1 cut(s)	437
AloI	GAACNNNNNNTCC	2 cut(s)	158, 190
AluBI	AGCT	4 cut(s)	47, 283, 400, 450
AluI	AGCT	4 cut(s)	47, 283, 400, 450
Alw21I	GWGCWC	1 cut(s)	203
AoxI	GGCC	4 cut(s)	112, 168, 411, 457
ApeKI	GCWGC	3 cut(s)	187, 280, 397
Asp700I	GAANNNNTTC	1 cut(s)	459
AspLEI	GCGC	6 cut(s)	76, 152, 187, 246, 371, 419
AspS9I	GGNCC	4 cut(s)	57, 103, 169, 435
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	3 cut(s)	57, 103, 435
BanI	GGYRCC	3 cut(s)	73, 149, 368
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	203
BbvI	GCAGC	3 cut(s)	199, 292, 409
BccI	CCATC	1 cut(s)	94
BceAI	ACGGC	5 cut(s)	78, 334, 356, 382, 410
BciT130I	CCWGG	1 cut(s)	439
BfaI	CTAG	1 cut(s)	284
BfoI	RGCGCY	3 cut(s)	77, 153, 372
BfuAI	ACCTGC	1 cut(s)	76
BglI	GCCNNNNNGGC	1 cut(s)	410
BisI	GCNGC	7 cut(s)	66, 77, 183, 188, 209, 281, 398
BlsI	GCNGC	7 cut(s)	67, 78, 184, 189, 210, 282, 399
Bme1390I	CCNGG	1 cut(s)	439
Bme18I	GGWCC	3 cut(s)	57, 103, 435
BmgT120I	GGNCC	4 cut(s)	57, 103, 169, 435
BmiI	GGNNCC	4 cut(s)	58, 75, 151, 370
BmrFI	CCNGG	1 cut(s)	439
BpiI	GAAGAC	1 cut(s)	237
BpmI	CTGGAG	2 cut(s)	185, 315
BsaHI	GRCGYC	3 cut(s)	74, 150, 369
BsaJI	CCNNGG	2 cut(s)	60, 109
BsaWI	WCCGGW	1 cut(s)	315
BsaXI	ACNNNNNCTCC	6 cut(s)	22, 52, 158, 188, 251, 281
Bsc4I	CCNNNNNNNGG	6 cut(s)	133, 163, 166, 178, 276, 387
Bse118I	RCCGGY	3 cut(s)	119, 404, 413
BseBI	CCWGG	1 cut(s)	439
BseDI	CCNNGG	2 cut(s)	60, 109
BseLI	CCNNNNNNNGG	6 cut(s)	133, 163, 166, 178, 276, 387
BseXI	GCAGC	3 cut(s)	199, 292, 409
BsgI	GTGCAG	1 cut(s)	326
Bsh1236I	CGCG	3 cut(s)	134, 322, 419
Bsh1285I	CGRYCG	3 cut(s)	124, 157, 320
BshFI	GGCC	4 cut(s)	114, 170, 413, 459
BshNI	GGYRCC	3 cut(s)	73, 149, 368
BsiEI	CGRYCG	3 cut(s)	124, 157, 320
BsiHKAI	GWGCWC	1 cut(s)	203
BsiSI	CCGG	4 cut(s)	120, 316, 405, 414
BslFI	GGGAC	2 cut(s)	345, 351
BslI	CCNNNNNNNGG	6 cut(s)	133, 163, 166, 178, 276, 387
BsmFI	GGGAC	2 cut(s)	345, 351
BsnI	GGCC	4 cut(s)	114, 170, 413, 459
Bsp1286I	GDGCHC	1 cut(s)	203
BspANI	GGCC	4 cut(s)	114, 170, 413, 459
BspFNI	CGCG	3 cut(s)	134, 322, 419
BspLI	GGNNCC	4 cut(s)	58, 75, 151, 370
BspMI	ACCTGC	1 cut(s)	76
BspT107I	GGYRCC	3 cut(s)	73, 149, 368
BsrBI	CCGCTC	2 cut(s)	211, 267
BsrFI	RCCGGY	3 cut(s)	119, 404, 413
BssAI	RCCGGY	3 cut(s)	119, 404, 413
BssECI	CCNNGG	2 cut(s)	60, 109
BssNI	GRCGYC	3 cut(s)	74, 150, 369
Bst2UI	CCWGG	1 cut(s)	439
Bst6I	CTCTTC	1 cut(s)	282
BstACI	GRCGYC	3 cut(s)	74, 150, 369
BstC8I	GCNNGC	4 cut(s)	45, 248, 402, 415
BstDSI	CCRYGG	1 cut(s)	60
BstENI	CCTNNNNNAGG	1 cut(s)	164
BstFNI	CGCG	3 cut(s)	134, 322, 419
BstH2I	RGCGCY	3 cut(s)	77, 153, 372
BstHHI	GCGC	6 cut(s)	76, 152, 187, 246, 371, 419
BstMCI	CGRYCG	3 cut(s)	124, 157, 320
BstMWI	GCNNNNNNNGC	7 cut(s)	10, 71, 82, 156, 377, 410, 456
BstNI	CCWGG	1 cut(s)	439
BstNSI	RCATGY	1 cut(s)	349
BstSCI	CCNGG	1 cut(s)	437
BstUI	CGCG	3 cut(s)	134, 322, 419
BstV1I	GCAGC	3 cut(s)	199, 292, 409
BstV2I	GAAGAC	1 cut(s)	237
BsuRI	GGCC	4 cut(s)	114, 170, 413, 459
BtgI	CCRYGG	1 cut(s)	60
BtgZI	GCGATG	2 cut(s)	113, 115
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	2 cut(s)	432, 463
BveI	ACCTGC	1 cut(s)	76
Cac8I	GCNNGC	4 cut(s)	45, 248, 402, 415
CfoI	GCGC	6 cut(s)	76, 152, 187, 246, 371, 419
Cfr10I	RCCGGY	3 cut(s)	119, 404, 413
Cfr13I	GGNCC	4 cut(s)	57, 103, 169, 435
CseI	GACGC	1 cut(s)	408
CsiI	ACCWGGT	1 cut(s)	437
CviAII	CATG	2 cut(s)	241, 346
DinI	GGCGCC	3 cut(s)	75, 151, 370
DrdI	GACNNNNNNGTC	1 cut(s)	371
DseDI	GACNNNNNNGTC	1 cut(s)	371
EaeI	YGGCCR	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
EciI	GGCGGA	2 cut(s)	30, 83
Eco147I	AGGCCT	1 cut(s)	459
Eco47I	GGWCC	3 cut(s)	57, 103, 435
EcoNI	CCTNNNNNAGG	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	437
EgeI	GGCGCC	3 cut(s)	75, 151, 370
EheI	GGCGCC	3 cut(s)	75, 151, 370
FaeI	CATG	2 cut(s)	244, 349
FaiI	YATR	4 cut(s)	242, 272, 347, 384
FaqI	GGGAC	2 cut(s)	345, 351
FatI	CATG	2 cut(s)	240, 345
Fnu4HI	GCNGC	7 cut(s)	66, 77, 183, 188, 209, 281, 398
Fsp4HI	GCNGC	7 cut(s)	66, 77, 183, 188, 209, 281, 398
FspBI	CTAG	1 cut(s)	284
GlaI	GCGC	6 cut(s)	75, 151, 186, 245, 370, 418
GluI	GCNGC	7 cut(s)	66, 77, 183, 188, 209, 281, 398
GsuI	CTGGAG	2 cut(s)	185, 315
HaeII	RGCGCY	3 cut(s)	77, 153, 372
HaeIII	GGCC	4 cut(s)	114, 170, 413, 459
HapII	CCGG	4 cut(s)	120, 316, 405, 414
HgaI	GACGC	1 cut(s)	408
HhaI	GCGC	6 cut(s)	76, 152, 187, 246, 371, 419
Hin1I	GRCGYC	3 cut(s)	74, 150, 369
Hin1II	CATG	2 cut(s)	244, 349
Hin6I	GCGC	6 cut(s)	74, 150, 185, 244, 369, 417
HinP1I	GCGC	6 cut(s)	74, 150, 185, 244, 369, 417
HinfI	GANTC	2 cut(s)	290, 308
HpaII	CCGG	4 cut(s)	120, 316, 405, 414
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	2 cut(s)	60, 430
Hpy188I	TCNGA	2 cut(s)	303, 454
Hpy188III	TCNNGA	3 cut(s)	164, 294, 362
Hpy8I	GTNNAC	2 cut(s)	60, 430
Hpy99I	CGWCG	5 cut(s)	28, 31, 368, 377, 380
HpyAV	CCTTC	3 cut(s)	170, 270, 449
HpyCH4V	TGCA	2 cut(s)	4, 343
HpyF10VI	GCNNNNNNNGC	7 cut(s)	10, 71, 82, 156, 377, 410, 456
Hsp92I	GRCGYC	3 cut(s)	74, 150, 369
Hsp92II	CATG	2 cut(s)	244, 349
HspAI	GCGC	6 cut(s)	74, 150, 185, 244, 369, 417
KasI	GGCGCC	3 cut(s)	73, 149, 368
KroI	GCCGGC	1 cut(s)	413
KroNI	GCCGGC	1 cut(s)	415
LmnI	GCTCC	3 cut(s)	216, 272, 324
Lsp1109I	GCAGC	3 cut(s)	199, 292, 409
MabI	ACCWGGT	1 cut(s)	437
MaeI	CTAG	1 cut(s)	284
MbiI	CCGCTC	2 cut(s)	211, 267
MboII	GAAGA	2 cut(s)	242, 299
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	1 cut(s)	328
Mly113I	GGCGCC	3 cut(s)	74, 150, 369
MlyI	GAGTC	1 cut(s)	299
MnlI	CCTC	9 cut(s)	64, 119, 137, 160, 201, 233, 247, 263, 272
MroNI	GCCGGC	1 cut(s)	413
MroXI	GAANNNNTTC	1 cut(s)	459
MslI	CAYNNNNRTG	1 cut(s)	239
MspI	CCGG	4 cut(s)	120, 316, 405, 414
MspR9I	CCNGG	1 cut(s)	439
MvaI	CCWGG	1 cut(s)	439
MvnI	CGCG	3 cut(s)	134, 322, 419
MwoI	GCNNNNNNNGC	7 cut(s)	10, 71, 82, 156, 377, 410, 456
NaeI	GCCGGC	1 cut(s)	415
NarI	GGCGCC	3 cut(s)	74, 150, 369
NgoMIV	GCCGGC	1 cut(s)	413
NlaIII	CATG	2 cut(s)	244, 349
NlaIV	GGNNCC	4 cut(s)	58, 75, 151, 370
NmeAIII	GCCGAG	2 cut(s)	90, 126
NspI	RCATGY	1 cut(s)	349
PaqCI	CACCTGC	1 cut(s)	76
PceI	AGGCCT	1 cut(s)	459
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PdiI	GCCGGC	1 cut(s)	415
PdmI	GAANNNNTTC	1 cut(s)	459
PfeI	GAWTC	1 cut(s)	308
PkrI	GCNGC	7 cut(s)	67, 78, 184, 189, 210, 282, 399
PleI	GAGTC	1 cut(s)	298
PluTI	GGCGCC	3 cut(s)	77, 153, 372
PpsI	GAGTC	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	437
PspGI	CCWGG	1 cut(s)	437
PspN4I	GGNNCC	4 cut(s)	58, 75, 151, 370
PspPI	GGNCC	4 cut(s)	57, 103, 169, 435
RseI	CAYNNNNRTG	1 cut(s)	239
SatI	GCNGC	7 cut(s)	66, 77, 183, 188, 209, 281, 398
Sau96I	GGNCC	4 cut(s)	57, 103, 169, 435
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	439
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	9 cut(s)	49, 90, 239, 255, 264, 285, 402, 443, 452
SexAI	ACCWGGT	1 cut(s)	437
SfoI	GGCGCC	3 cut(s)	75, 151, 370
SinI	GGWCC	3 cut(s)	57, 103, 435
SmiMI	CAYNNNNRTG	1 cut(s)	239
Sse9I	AATT	1 cut(s)	328
SseBI	AGGCCT	1 cut(s)	459
SspDI	GGCGCC	3 cut(s)	73, 149, 368
SspMI	CTAG	1 cut(s)	284
StuI	AGGCCT	1 cut(s)	459
StyD4I	CCNGG	1 cut(s)	437
TasI	AATT	1 cut(s)	328
TauI	GCSGC	4 cut(s)	68, 79, 185, 211
TfiI	GAWTC	1 cut(s)	308
TscAI	CASTG	1 cut(s)	432
TseI	GCWGC	3 cut(s)	187, 280, 397
TspDTI	ATGAA	1 cut(s)	243
TspRI	CASTG	1 cut(s)	432
VpaK11BI	GGWCC	3 cut(s)	57, 103, 435
XagI	CCTNNNNNAGG	1 cut(s)	164
XceI	RCATGY	1 cut(s)	349
XmnI	GAANNNNTTC	1 cut(s)	459
XspI	CTAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.