RLG00000029753

mediator of RNA polymerase II transcription subunit

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
48520035 .. 48524060
4026 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029753

Sequence Viewer

Length: 1161 bp
ATGCAACAACAGCCACCGCAGTCGACGACGACTACTACTCCGCCAGCTTCGGTAGGGTCCACGGCGGCGGAGGCGCCGCCGAAGCAGGTGGCTTTGGCGATGGACCGCCTCGGCCAAGCCGGTCGCCTCATCGCGGACATTAGGCTCGGCGCCGACCGCCTTCTGGAGGCCCTGTTCGTGGCGGCGCAGCCTCACCAGAGCACCAAGCCGCTCCACTTGTTCCTCAATGAAGACACCTCCATGCGCCAGCACCTCCAAGACCTCCGCTCCATAGGAAGGCAGCTAGAAGAGTCTGGAGTTCTGAATGATTCTCTCCGGTCGCGGAGCAATTCTTGGGGACTGCACATGCCGTTGGTTTGTCCCGACGGCGCCGTCGTCGCCTATGCTTGGAAACGGCAGCTCGCCGGTCAAGCCGGCGCGTCCGCAGTGGACAGGACCAGGTTAGCTCTGAAGGCCTTCACTGATCAGAAAAGAAGATTTTTTCCTCACCTTGATGATGGATCGGACAGTCAGAGTGACGAACCAGTTTCAAAGAAACCGTGTGTTTCCCCATCATTGACTACACACAATCAAGAAGAGCTACTAGATTGTAAGACACTATCAGAGGTTTTAATGAGCTTGGAAAAGAAGGTGCCTAACTTGAAAGTTTTCACCTACAAACGATTGGATTGGTTAAAAAGAGCATCGTCACTGCCAGCTAATGAGAATCCACTGGAAACAGTGAAGGACCATAGTTTTCATAGTTCGAGTAAGTTACGAGCTACTCCACTGGCTGATGTTGCGATAGATAAGGTTGCTGTCATCGAGTTGCTGTTTCCGTCTGTCTTCAGAGCTGTAGTATCATTGCATCCTGCTGGTTCTATTGACCCAGACGCAGTAGCTTTCTTTTCTCCAGAAGAGGGAGGCAGCTACATTCATGCAAGAGGTTTTTCAGTTTATCATGTGTTTAAACATATCACGGAACATGCTGGTTTGGCCTTGCAGTACTTTCTTGGGGTTCAAGCTGAAACAGCTCTATTTTCCCTTTTGCTCTGGATCTGCAGCTACCAAACTCTATTTACAAAAGTTTGCAGTAAGTGCGAACGACTGCTAGCTATGGACCGACAATCAGCTTTACTGTTGTTTTACGGAGGAAAGGTGATCTCTACTACTGACAGGTAA

Protein Analysis

387

Amino Acids

42.55

Weight (kDa)

8.16

Isoelectric Point (pI)

50.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Med27 PF11571 311 - 369 1.2e-13 Mediator complex subunit 27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 76
AasI GACNNNNNNGTC 1 cut(s) 371
Acc36I ACCTGC 1 cut(s) 76
AccB1I GGYRCC 4 cut(s) 73, 149, 368, 631
AccBSI CCGCTC 2 cut(s) 211, 267
AccI GTMKAC 1 cut(s) 23
AccII CGCG 3 cut(s) 134, 322, 419
AclWI GGATC 2 cut(s) 508, 1043
AcoI YGGCCR 1 cut(s) 112
AcuI CTGAAG 2 cut(s) 470, 811
AcyI GRCGYC 3 cut(s) 74, 150, 369
AfaI GTAC 1 cut(s) 986
AfiI CCNNNNNNNGG 7 cut(s) 133, 163, 166, 178, 276, 387, 899
AgsI TTSAA 3 cut(s) 531, 643, 1001
AjnI CCWGG 1 cut(s) 437
AloI GAACNNNNNNTCC 2 cut(s) 158, 190
Alw21I GWGCWC 1 cut(s) 203
AlwI GGATC 2 cut(s) 508, 1043
AoxI GGCC 4 cut(s) 112, 168, 453, 975
ApeKI GCWGC 5 cut(s) 187, 280, 397, 906, 1041
Asp700I GAANNNNTTC 2 cut(s) 455, 647
AspLEI GCGC 6 cut(s) 76, 152, 187, 246, 371, 419
AspS9I GGNCC 6 cut(s) 57, 103, 169, 435, 727, 1099
AsuHPI GGTGA 4 cut(s) 185, 479, 643, 1150
AsuNHI GCTAGC 1 cut(s) 1090
AvaII GGWCC 5 cut(s) 57, 103, 435, 727, 1099
BanI GGYRCC 4 cut(s) 73, 149, 368, 631
BbsI GAAGAC 2 cut(s) 237, 817
Bbv12I GWGCWC 1 cut(s) 203
BbvI GCAGC 5 cut(s) 199, 292, 409, 918, 1053
BccI CCATC 3 cut(s) 94, 491, 559
BceAI ACGGC 5 cut(s) 78, 334, 356, 382, 410
BciT130I CCWGG 1 cut(s) 439
BclI TGATCA 1 cut(s) 463
BfaI CTAG 3 cut(s) 284, 584, 1091
BfmI CTRYAG 2 cut(s) 834, 1039
BfoI RGCGCY 3 cut(s) 77, 153, 372
BfuAI ACCTGC 1 cut(s) 76
BisI GCNGC 9 cut(s) 66, 77, 183, 188, 209, 281, 398, 907, 1042
BlsI GCNGC 9 cut(s) 67, 78, 184, 189, 210, 282, 399, 908, 1043
BmcAI AGTACT 1 cut(s) 986
Bme1390I CCNGG 1 cut(s) 439
Bme18I GGWCC 5 cut(s) 57, 103, 435, 727, 1099
BmgT120I GGNCC 6 cut(s) 57, 103, 169, 435, 727, 1099
BmiI GGNNCC 5 cut(s) 58, 75, 151, 370, 633
BmrFI CCNGG 1 cut(s) 439
BmsI GCATC 2 cut(s) 692, 856
BmtI GCTAGC 1 cut(s) 1094
BpiI GAAGAC 2 cut(s) 237, 817
BpmI CTGGAG 3 cut(s) 185, 315, 876
BsaHI GRCGYC 3 cut(s) 74, 150, 369
BsaJI CCNNGG 2 cut(s) 60, 109
BsaWI WCCGGW 1 cut(s) 315
BsaXI ACNNNNNCTCC 8 cut(s) 22, 52, 158, 188, 251, 281, 1122, 1152
Bsc4I CCNNNNNNNGG 7 cut(s) 133, 163, 166, 178, 276, 387, 899
Bse118I RCCGGY 3 cut(s) 119, 404, 413
Bse1I ACTGG 3 cut(s) 524, 717, 774
Bse3DI GCAATG 1 cut(s) 842
BseBI CCWGG 1 cut(s) 439
BseDI CCNNGG 2 cut(s) 60, 109
BseGI GGATG 1 cut(s) 847
BseLI CCNNNNNNNGG 7 cut(s) 133, 163, 166, 178, 276, 387, 899
BseMI GCAATG 1 cut(s) 842
BseNI ACTGG 3 cut(s) 524, 717, 774
BseXI GCAGC 5 cut(s) 199, 292, 409, 918, 1053
BsgI GTGCAG 1 cut(s) 326
Bsh1236I CGCG 3 cut(s) 134, 322, 419
Bsh1285I CGRYCG 3 cut(s) 124, 157, 320
BshFI GGCC 4 cut(s) 114, 170, 455, 977
BshNI GGYRCC 4 cut(s) 73, 149, 368, 631
BsiEI CGRYCG 3 cut(s) 124, 157, 320
BsiHKAI GWGCWC 1 cut(s) 203
BsiSI CCGG 4 cut(s) 120, 316, 405, 414
BslFI GGGAC 2 cut(s) 345, 351
BslI CCNNNNNNNGG 7 cut(s) 133, 163, 166, 178, 276, 387, 899
BsmFI GGGAC 2 cut(s) 345, 351
BsnI GGCC 4 cut(s) 114, 170, 455, 977
Bsp1286I GDGCHC 1 cut(s) 203
Bsp143I GATC 4 cut(s) 463, 500, 1035, 1140
BspANI GGCC 4 cut(s) 114, 170, 455, 977
BspFNI CGCG 3 cut(s) 134, 322, 419
BspLI GGNNCC 5 cut(s) 58, 75, 151, 370, 633
BspMAI CTGCAG 1 cut(s) 1043
BspMI ACCTGC 1 cut(s) 76
BspOI GCTAGC 1 cut(s) 1094
BspPI GGATC 2 cut(s) 508, 1043
BspQI GCTCTTC 1 cut(s) 570
BspT107I GGYRCC 4 cut(s) 73, 149, 368, 631
BsrBI CCGCTC 2 cut(s) 211, 267
BsrDI GCAATG 1 cut(s) 842
BsrFI RCCGGY 3 cut(s) 119, 404, 413
BsrI ACTGG 3 cut(s) 524, 717, 774
BssAI RCCGGY 3 cut(s) 119, 404, 413
BssECI CCNNGG 2 cut(s) 60, 109
BssMI GATC 4 cut(s) 463, 500, 1035, 1140
BssNI GRCGYC 3 cut(s) 74, 150, 369
Bst2UI CCWGG 1 cut(s) 439
Bst4CI ACNGT 4 cut(s) 509, 540, 721, 1119
Bst6I CTCTTC 3 cut(s) 282, 570, 891
BstACI GRCGYC 3 cut(s) 74, 150, 369
BstAPI GCANNNNNTGC 1 cut(s) 1077
BstC8I GCNNGC 6 cut(s) 45, 248, 402, 415, 696, 1092
BstDSI CCRYGG 1 cut(s) 60
BstENI CCTNNNNNAGG 1 cut(s) 164
BstF5I GGATG 1 cut(s) 847
BstFNI CGCG 3 cut(s) 134, 322, 419
BstH2I RGCGCY 3 cut(s) 77, 153, 372
BstHHI GCGC 6 cut(s) 76, 152, 187, 246, 371, 419
BstKTI GATC 4 cut(s) 466, 503, 1038, 1143
BstMBI GATC 4 cut(s) 463, 500, 1035, 1140
BstMCI CGRYCG 3 cut(s) 124, 157, 320
BstNI CCWGG 1 cut(s) 439
BstNSI RCATGY 2 cut(s) 349, 968
BstSCI CCNGG 1 cut(s) 437
BstSFI CTRYAG 2 cut(s) 834, 1039
BstUI CGCG 3 cut(s) 134, 322, 419
BstV1I GCAGC 5 cut(s) 199, 292, 409, 918, 1053
BstV2I GAAGAC 2 cut(s) 237, 817
BstX2I RGATCY 1 cut(s) 1035
BstYI RGATCY 1 cut(s) 1035
BsuRI GGCC 4 cut(s) 114, 170, 455, 977
BtgI CCRYGG 1 cut(s) 60
BtgZI GCGATG 2 cut(s) 113, 115
BtsCI GGATG 1 cut(s) 847
BtsI GCAGTG 2 cut(s) 432, 689
BtsIMutI CAGTG 6 cut(s) 432, 459, 689, 710, 726, 767
BveI ACCTGC 1 cut(s) 76
Cac8I GCNNGC 6 cut(s) 45, 248, 402, 415, 696, 1092
CfoI GCGC 6 cut(s) 76, 152, 187, 246, 371, 419
Cfr10I RCCGGY 3 cut(s) 119, 404, 413
Cfr13I GGNCC 6 cut(s) 57, 103, 169, 435, 727, 1099
CseI GACGC 2 cut(s) 408, 881
CsiI ACCWGGT 1 cut(s) 437
Csp6I GTAC 1 cut(s) 985
CviAII CATG 5 cut(s) 241, 346, 917, 941, 965
CviQI GTAC 1 cut(s) 985
DinI GGCGCC 3 cut(s) 75, 151, 370
DpnI GATC 4 cut(s) 465, 502, 1037, 1142
DpnII GATC 4 cut(s) 463, 500, 1035, 1140
DraI TTTAAA 1 cut(s) 949
DrdI GACNNNNNNGTC 1 cut(s) 371
DseDI GACNNNNNNGTC 1 cut(s) 371
EaeI YGGCCR 1 cut(s) 112
Eam1104I CTCTTC 3 cut(s) 282, 570, 891
EarI CTCTTC 3 cut(s) 282, 570, 891
EciI GGCGGA 2 cut(s) 30, 83
Eco147I AGGCCT 1 cut(s) 455
Eco47I GGWCC 5 cut(s) 57, 103, 435, 727, 1099
Eco57I CTGAAG 2 cut(s) 470, 811
EcoNI CCTNNNNNAGG 1 cut(s) 164
EcoO109I RGGNCCY 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 437
EgeI GGCGCC 3 cut(s) 75, 151, 370
EheI GGCGCC 3 cut(s) 75, 151, 370
FaeI CATG 5 cut(s) 244, 349, 920, 944, 968
FaqI GGGAC 2 cut(s) 345, 351
FatI CATG 5 cut(s) 240, 345, 916, 940, 964
FbaI TGATCA 1 cut(s) 463
FblI GTMKAC 1 cut(s) 23
Fnu4HI GCNGC 9 cut(s) 66, 77, 183, 188, 209, 281, 398, 907, 1042
FokI GGATG 1 cut(s) 834
Fsp4HI GCNGC 9 cut(s) 66, 77, 183, 188, 209, 281, 398, 907, 1042
FspBI CTAG 3 cut(s) 284, 584, 1091
GlaI GCGC 6 cut(s) 75, 151, 186, 245, 370, 418
GluI GCNGC 9 cut(s) 66, 77, 183, 188, 209, 281, 398, 907, 1042
GsuI CTGGAG 3 cut(s) 185, 315, 876
HaeII RGCGCY 3 cut(s) 77, 153, 372
HaeIII GGCC 4 cut(s) 114, 170, 455, 977
HapII CCGG 4 cut(s) 120, 316, 405, 414
HgaI GACGC 2 cut(s) 408, 881
HhaI GCGC 6 cut(s) 76, 152, 187, 246, 371, 419
Hin1I GRCGYC 3 cut(s) 74, 150, 369
Hin1II CATG 5 cut(s) 244, 349, 920, 944, 968
Hin6I GCGC 6 cut(s) 74, 150, 185, 244, 369, 417
HinP1I GCGC 6 cut(s) 74, 150, 185, 244, 369, 417
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HinfI GANTC 3 cut(s) 290, 308, 706
HpaII CCGG 4 cut(s) 120, 316, 405, 414
HphI GGTGA 4 cut(s) 185, 479, 643, 1150
Hpy166II GTNNAC 3 cut(s) 24, 60, 430
Hpy188I TCNGA 7 cut(s) 303, 450, 468, 505, 513, 604, 830
Hpy188III TCNNGA 6 cut(s) 164, 294, 362, 572, 893, 1033
Hpy8I GTNNAC 3 cut(s) 24, 60, 430
Hpy99I CGWCG 5 cut(s) 28, 31, 368, 377, 380
HpyAV CCTTC 6 cut(s) 170, 270, 445, 466, 622, 718
HpyCH4III ACNGT 4 cut(s) 509, 540, 721, 1119
HpyCH4V TGCA 7 cut(s) 4, 343, 847, 920, 982, 1041, 1071
Hsp92I GRCGYC 3 cut(s) 74, 150, 369
Hsp92II CATG 5 cut(s) 244, 349, 920, 944, 968
HspAI GCGC 6 cut(s) 74, 150, 185, 244, 369, 417
KasI GGCGCC 3 cut(s) 73, 149, 368
KroI GCCGGC 1 cut(s) 413
KroNI GCCGGC 1 cut(s) 415
Ksp22I TGATCA 1 cut(s) 463
Kzo9I GATC 4 cut(s) 463, 500, 1035, 1140
LguI GCTCTTC 1 cut(s) 570
LmnI GCTCC 3 cut(s) 216, 272, 324
Lsp1109I GCAGC 5 cut(s) 199, 292, 409, 918, 1053
LweI GCATC 2 cut(s) 692, 856
MabI ACCWGGT 1 cut(s) 437
MaeI CTAG 3 cut(s) 284, 584, 1091
MaeIII GTNAC 3 cut(s) 515, 687, 753
MalI GATC 4 cut(s) 465, 502, 1037, 1142
MbiI CCGCTC 2 cut(s) 211, 267
MboI GATC 4 cut(s) 463, 500, 1035, 1140
MboII GAAGA 6 cut(s) 242, 299, 486, 587, 817, 908
MflI RGATCY 1 cut(s) 1035
MhlI GDGCHC 1 cut(s) 203
MluCI AATT 1 cut(s) 328
Mly113I GGCGCC 3 cut(s) 74, 150, 369
MlyI GAGTC 1 cut(s) 299
MroNI GCCGGC 1 cut(s) 413
MroXI GAANNNNTTC 2 cut(s) 455, 647
MseI TTAA 3 cut(s) 611, 674, 948
MslI CAYNNNNRTG 2 cut(s) 239, 492
MspI CCGG 4 cut(s) 120, 316, 405, 414
MspR9I CCNGG 1 cut(s) 439
MssI GTTTAAAC 1 cut(s) 949
MvaI CCWGG 1 cut(s) 439
MvnI CGCG 3 cut(s) 134, 322, 419
NaeI GCCGGC 1 cut(s) 415
NarI GGCGCC 3 cut(s) 74, 150, 369
NdeII GATC 4 cut(s) 463, 500, 1035, 1140
NgoMIV GCCGGC 1 cut(s) 413
NheI GCTAGC 1 cut(s) 1090
NlaIII CATG 5 cut(s) 244, 349, 920, 944, 968
NlaIV GGNNCC 5 cut(s) 58, 75, 151, 370, 633
NmeAIII GCCGAG 2 cut(s) 90, 126
NmuCI GTSAC 2 cut(s) 515, 687
NspI RCATGY 2 cut(s) 349, 968
PaqCI CACCTGC 1 cut(s) 76
PceI AGGCCT 1 cut(s) 455
PciSI GCTCTTC 1 cut(s) 570
PcsI WCGNNNNNNNCGW 1 cut(s) 372
PdiI GCCGGC 1 cut(s) 415
PdmI GAANNNNTTC 2 cut(s) 455, 647
PfeI GAWTC 2 cut(s) 308, 706
PkrI GCNGC 9 cut(s) 67, 78, 184, 189, 210, 282, 399, 908, 1043
PleI GAGTC 1 cut(s) 298
PluTI GGCGCC 3 cut(s) 77, 153, 372
PmeI GTTTAAAC 1 cut(s) 949
PpsI GAGTC 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 437
PspGI CCWGG 1 cut(s) 437
PspN4I GGNNCC 5 cut(s) 58, 75, 151, 370, 633
PspPI GGNCC 6 cut(s) 57, 103, 169, 435, 727, 1099
PstI CTGCAG 1 cut(s) 1043
PsuI RGATCY 1 cut(s) 1035
RsaI GTAC 1 cut(s) 986
RsaNI GTAC 1 cut(s) 985
RseI CAYNNNNRTG 2 cut(s) 239, 492
SalI GTCGAC 1 cut(s) 22
SapI GCTCTTC 1 cut(s) 570
SaqAI TTAA 3 cut(s) 611, 674, 948
SatI GCNGC 9 cut(s) 66, 77, 183, 188, 209, 281, 398, 907, 1042
Sau3AI GATC 4 cut(s) 463, 500, 1035, 1140
Sau96I GGNCC 6 cut(s) 57, 103, 169, 435, 727, 1099
ScaI AGTACT 1 cut(s) 986
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 1 cut(s) 439
SduI GDGCHC 1 cut(s) 203
SexAI ACCWGGT 1 cut(s) 437
SfaNI GCATC 2 cut(s) 692, 856
SfcI CTRYAG 2 cut(s) 834, 1039
SfoI GGCGCC 3 cut(s) 75, 151, 370
SinI GGWCC 5 cut(s) 57, 103, 435, 727, 1099
SmiMI CAYNNNNRTG 2 cut(s) 239, 492
Sse9I AATT 1 cut(s) 328
SseBI AGGCCT 1 cut(s) 455
SspDI GGCGCC 3 cut(s) 73, 149, 368
SspMI CTAG 3 cut(s) 284, 584, 1091
StuI AGGCCT 1 cut(s) 455
StyD4I CCNGG 1 cut(s) 437
TaaI ACNGT 4 cut(s) 509, 540, 721, 1119
TaqI TCGA 3 cut(s) 23, 746, 804
TaqII GACCGA 1 cut(s) 1116
TasI AATT 1 cut(s) 328
TatI WGTACW 1 cut(s) 984
TauI GCSGC 4 cut(s) 68, 79, 185, 211
TfiI GAWTC 2 cut(s) 308, 706
Tru1I TTAA 3 cut(s) 611, 674, 948
Tru9I TTAA 3 cut(s) 611, 674, 948
TscAI CASTG 6 cut(s) 432, 466, 696, 717, 726, 774
TseFI GTSAC 2 cut(s) 515, 687
TseI GCWGC 5 cut(s) 187, 280, 397, 906, 1041
Tsp45I GTSAC 2 cut(s) 515, 687
TspDTI ATGAA 3 cut(s) 243, 728, 905
TspGWI ACGGA 3 cut(s) 807, 974, 1143
TspRI CASTG 6 cut(s) 432, 466, 696, 717, 726, 774
VpaK11BI GGWCC 5 cut(s) 57, 103, 435, 727, 1099
XagI CCTNNNNNAGG 1 cut(s) 164
XceI RCATGY 2 cut(s) 349, 968
XmiI GTMKAC 1 cut(s) 23
XmnI GAANNNNTTC 2 cut(s) 455, 647
XspI CTAG 3 cut(s) 284, 584, 1091
ZrmI AGTACT 1 cut(s) 986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.