RLG00000023803

mediator of RNA polymerase II transcription subunit

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
28503005 .. 28506994
3990 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023803

Sequence Viewer

Length: 1149 bp
ATGCAACAACAGCCACCGCAGACGACGACTACTACTCCGCCAGCTTCGGTAGGGTCCACGGCGGCGGAGGCGCCGCCGAAGCAGGTGGCTTTGGCGATGGACCGCCTCGGCCAAGCCGGTCGCCTCATCGCCGACATTAGGCTCGGCGCCGACCGCCTTCTGGAGGCCCTATTCGTGGCGGCGCAGCCTCACCAGAGCACCAAGCCGCTCCACTTGTTCCTCAATGAAGACGCCTCCATGCGCCAGCACCTCCAAGACCTCCGCTCCATAGGAAGGCAGCTAGAAGAGTCTGGAGTTTTGAATGATTCTCTCCGGTCGCGAAGTAATTCTTGGGGACTGCACATGCCGTTGGTTTGTCCCGACGGCGCCGTCGTCGCCTATGCTTGGAAACGGCAGCTCGCCGGCCAGGCCGGCGCGTCCGCAGTGGACAGGACCAGGTTAGCACTGAAGGCCTTCACTGATCAGAAAAGAAGATTTTTTCCTCACCTTGATGATGGATTGGACAGTCAGAGTGACGAACCAGTTTCAAAGAAACCGTGTGTTTCCCCATCATTGACTACACACAATCAAGAAGAGCTGCTAGATTGCAAGACACTATCAGAGGTTTTAATGAGCTTGGAAAAGAAGGTTCCTAACTTGAAAATTTTCACCTATGAACGATTGGATTGGTTAAAAAGAGCATCTTCACTGCCAGCAAATGAGAGTCCACTGGAAACAGTGAAGGACCATAGTTTTCATAGTTCGAGTAAGTTACGAGCAACTCCACTGGCTGATGCTGCGATAGATAAGGTTGCTGTCATCGAGTTGCTGTTTCCGTCTGTCTTCAGAGCTGTATTATCATTGCATCCTGCTGGTTCTATTGACCCAGATGCAGTAGCTTTCTTTTCTCCAGAAGAGGGAGGCAGCTACATTCATGCAAGAGGTTTTTCAGTTTATCATGTGTTTAAACATATCACGGAACATGCTGGTTTGGCCTTGCAGTACTTTCTTGGAGTTCAAGCTGAAACAGCTCTATATTCCCTTTTGCTCTGGATCTGCAGCTACCAAACTCTATTTACAAAAGTTTGCAGTAAGTGCGAACGACTGCTAGCTATGGACCGACAATCAGCTTTACTGTTGCCTCCGGTGATCTCTACTACTGACAGGTAA

Protein Analysis

383

Amino Acids

42.09

Weight (kDa)

6.9

Isoelectric Point (pI)

51.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Med27 PF11571 310 - 380 1.8e-16 Mediator complex subunit 27
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 73
AasI GACNNNNNNGTC 1 cut(s) 368
Acc36I ACCTGC 1 cut(s) 73
AccB1I GGYRCC 3 cut(s) 70, 146, 365
AccBSI CCGCTC 2 cut(s) 208, 264
AccII CGCG 2 cut(s) 319, 416
AclWI GGATC 1 cut(s) 1040
AcoI YGGCCR 2 cut(s) 109, 403
AcsI RAATTY 1 cut(s) 642
AcuI CTGAAG 2 cut(s) 467, 808
AcyI GRCGYC 4 cut(s) 71, 147, 231, 366
AfaI GTAC 1 cut(s) 983
AfiI CCNNNNNNNGG 7 cut(s) 138, 160, 163, 175, 273, 384, 896
AgsI TTSAA 4 cut(s) 301, 528, 640, 998
AjnI CCWGG 2 cut(s) 405, 434
AjuI GAANNNNNNNTTGG 2 cut(s) 313, 345
Alw21I GWGCWC 1 cut(s) 200
AlwI GGATC 1 cut(s) 1040
AoxI GGCC 6 cut(s) 109, 165, 403, 408, 450, 972
ApeKI GCWGC 7 cut(s) 184, 277, 394, 577, 776, 903, 1038
ApoI RAATTY 1 cut(s) 642
Asp700I GAANNNNTTC 3 cut(s) 325, 452, 644
AspLEI GCGC 6 cut(s) 73, 149, 184, 243, 368, 416
AspS9I GGNCC 6 cut(s) 54, 100, 166, 432, 724, 1096
AsuHPI GGTGA 4 cut(s) 182, 476, 640, 1138
AsuNHI GCTAGC 1 cut(s) 1087
AvaII GGWCC 5 cut(s) 54, 100, 432, 724, 1096
BanI GGYRCC 3 cut(s) 70, 146, 365
BbsI GAAGAC 2 cut(s) 234, 814
Bbv12I GWGCWC 1 cut(s) 200
BbvI GCAGC 7 cut(s) 196, 289, 406, 564, 763, 915, 1050
BccI CCATC 3 cut(s) 91, 488, 556
BceAI ACGGC 5 cut(s) 75, 331, 353, 379, 407
BciT130I CCWGG 2 cut(s) 407, 436
BclI TGATCA 1 cut(s) 460
BfaI CTAG 3 cut(s) 281, 581, 1088
BfmI CTRYAG 1 cut(s) 1036
BfoI RGCGCY 3 cut(s) 74, 150, 369
BfuAI ACCTGC 1 cut(s) 73
BglI GCCNNNNNGGC 2 cut(s) 407, 411
BmcAI AGTACT 1 cut(s) 983
Bme1390I CCNGG 2 cut(s) 407, 436
Bme18I GGWCC 5 cut(s) 54, 100, 432, 724, 1096
BmgT120I GGNCC 6 cut(s) 54, 100, 166, 432, 724, 1096
BmiI GGNNCC 5 cut(s) 55, 72, 148, 367, 630
BmrFI CCNGG 2 cut(s) 407, 436
BmsI GCATC 4 cut(s) 689, 763, 853, 859
BmtI GCTAGC 1 cut(s) 1091
BpiI GAAGAC 2 cut(s) 234, 814
BpmI CTGGAG 3 cut(s) 182, 312, 873
BsaHI GRCGYC 4 cut(s) 71, 147, 231, 366
BsaJI CCNNGG 2 cut(s) 57, 106
BsaWI WCCGGW 2 cut(s) 312, 1123
BsaXI ACNNNNNCTCC 4 cut(s) 19, 49, 248, 278
Bsc4I CCNNNNNNNGG 7 cut(s) 138, 160, 163, 175, 273, 384, 896
Bse118I RCCGGY 3 cut(s) 116, 401, 410
Bse1I ACTGG 3 cut(s) 521, 714, 771
Bse3DI GCAATG 1 cut(s) 839
BseBI CCWGG 2 cut(s) 407, 436
BseDI CCNNGG 2 cut(s) 57, 106
BseGI GGATG 1 cut(s) 844
BseLI CCNNNNNNNGG 7 cut(s) 138, 160, 163, 175, 273, 384, 896
BseMI GCAATG 1 cut(s) 839
BseNI ACTGG 3 cut(s) 521, 714, 771
BseXI GCAGC 7 cut(s) 196, 289, 406, 564, 763, 915, 1050
BsgI GTGCAG 1 cut(s) 323
Bsh1236I CGCG 2 cut(s) 319, 416
Bsh1285I CGRYCG 3 cut(s) 121, 154, 317
BshFI GGCC 6 cut(s) 111, 167, 405, 410, 452, 974
BshNI GGYRCC 3 cut(s) 70, 146, 365
BsiEI CGRYCG 3 cut(s) 121, 154, 317
BsiHKAI GWGCWC 1 cut(s) 200
BsiSI CCGG 5 cut(s) 117, 313, 402, 411, 1124
BslFI GGGAC 2 cut(s) 342, 348
BslI CCNNNNNNNGG 7 cut(s) 138, 160, 163, 175, 273, 384, 896
BsmFI GGGAC 2 cut(s) 342, 348
BsnI GGCC 6 cut(s) 111, 167, 405, 410, 452, 974
Bsp1286I GDGCHC 1 cut(s) 200
Bsp143I GATC 3 cut(s) 460, 1032, 1128
Bsp68I TCGCGA 1 cut(s) 319
BspANI GGCC 6 cut(s) 111, 167, 405, 410, 452, 974
BspFNI CGCG 2 cut(s) 319, 416
BspLI GGNNCC 5 cut(s) 55, 72, 148, 367, 630
BspMAI CTGCAG 1 cut(s) 1040
BspMI ACCTGC 1 cut(s) 73
BspOI GCTAGC 1 cut(s) 1091
BspPI GGATC 1 cut(s) 1040
BspQI GCTCTTC 1 cut(s) 567
BspT107I GGYRCC 3 cut(s) 70, 146, 365
BsrBI CCGCTC 2 cut(s) 208, 264
BsrDI GCAATG 1 cut(s) 839
BsrFI RCCGGY 3 cut(s) 116, 401, 410
BsrI ACTGG 3 cut(s) 521, 714, 771
BssAI RCCGGY 3 cut(s) 116, 401, 410
BssECI CCNNGG 2 cut(s) 57, 106
BssMI GATC 3 cut(s) 460, 1032, 1128
BssNI GRCGYC 4 cut(s) 71, 147, 231, 366
Bst2UI CCWGG 2 cut(s) 407, 436
Bst4CI ACNGT 4 cut(s) 506, 537, 718, 1116
Bst6I CTCTTC 3 cut(s) 279, 567, 888
BstACI GRCGYC 4 cut(s) 71, 147, 231, 366
BstAPI GCANNNNNTGC 1 cut(s) 1074
BstC8I GCNNGC 7 cut(s) 42, 245, 399, 403, 412, 693, 1089
BstDSI CCRYGG 1 cut(s) 57
BstENI CCTNNNNNAGG 1 cut(s) 161
BstF5I GGATG 1 cut(s) 844
BstFNI CGCG 2 cut(s) 319, 416
BstH2I RGCGCY 3 cut(s) 74, 150, 369
BstHHI GCGC 6 cut(s) 73, 149, 184, 243, 368, 416
BstKTI GATC 3 cut(s) 463, 1035, 1131
BstMBI GATC 3 cut(s) 460, 1032, 1128
BstMCI CGRYCG 3 cut(s) 121, 154, 317
BstNI CCWGG 2 cut(s) 407, 436
BstNSI RCATGY 2 cut(s) 346, 965
BstSCI CCNGG 2 cut(s) 405, 434
BstSFI CTRYAG 1 cut(s) 1036
BstUI CGCG 2 cut(s) 319, 416
BstV1I GCAGC 7 cut(s) 196, 289, 406, 564, 763, 915, 1050
BstV2I GAAGAC 2 cut(s) 234, 814
BstX2I RGATCY 1 cut(s) 1032
BstYI RGATCY 1 cut(s) 1032
BsuRI GGCC 6 cut(s) 111, 167, 405, 410, 452, 974
BtgI CCRYGG 1 cut(s) 57
BtgZI GCGATG 2 cut(s) 110, 112
BtsCI GGATG 1 cut(s) 844
BtsI GCAGTG 2 cut(s) 429, 686
BtsIMutI CAGTG 7 cut(s) 429, 443, 456, 686, 707, 723, 764
BtuMI TCGCGA 1 cut(s) 319
BveI ACCTGC 1 cut(s) 73
Cac8I GCNNGC 7 cut(s) 42, 245, 399, 403, 412, 693, 1089
CfoI GCGC 6 cut(s) 73, 149, 184, 243, 368, 416
Cfr10I RCCGGY 3 cut(s) 116, 401, 410
Cfr13I GGNCC 6 cut(s) 54, 100, 166, 432, 724, 1096
CseI GACGC 2 cut(s) 239, 405
CsiI ACCWGGT 1 cut(s) 434
Csp6I GTAC 1 cut(s) 982
CviAII CATG 5 cut(s) 238, 343, 914, 938, 962
CviQI GTAC 1 cut(s) 982
DinI GGCGCC 3 cut(s) 72, 148, 367
DpnI GATC 3 cut(s) 462, 1034, 1130
DpnII GATC 3 cut(s) 460, 1032, 1128
DraI TTTAAA 1 cut(s) 946
DrdI GACNNNNNNGTC 1 cut(s) 368
DseDI GACNNNNNNGTC 1 cut(s) 368
EaeI YGGCCR 2 cut(s) 109, 403
Eam1104I CTCTTC 3 cut(s) 279, 567, 888
EarI CTCTTC 3 cut(s) 279, 567, 888
EciI GGCGGA 2 cut(s) 27, 80
Eco147I AGGCCT 1 cut(s) 452
Eco47I GGWCC 5 cut(s) 54, 100, 432, 724, 1096
Eco57I CTGAAG 2 cut(s) 467, 808
EcoNI CCTNNNNNAGG 1 cut(s) 161
EcoO109I RGGNCCY 1 cut(s) 166
EcoRII CCWGG 2 cut(s) 405, 434
EgeI GGCGCC 3 cut(s) 72, 148, 367
EheI GGCGCC 3 cut(s) 72, 148, 367
FaeI CATG 5 cut(s) 241, 346, 917, 941, 965
FalI AAGNNNNNCTT 4 cut(s) 313, 345, 667, 699
FaqI GGGAC 2 cut(s) 342, 348
FatI CATG 5 cut(s) 237, 342, 913, 937, 961
FbaI TGATCA 1 cut(s) 460
FokI GGATG 1 cut(s) 831
FspBI CTAG 3 cut(s) 281, 581, 1088
GlaI GCGC 6 cut(s) 72, 148, 183, 242, 367, 415
GsuI CTGGAG 3 cut(s) 182, 312, 873
HaeII RGCGCY 3 cut(s) 74, 150, 369
HaeIII GGCC 6 cut(s) 111, 167, 405, 410, 452, 974
HapII CCGG 5 cut(s) 117, 313, 402, 411, 1124
HgaI GACGC 2 cut(s) 239, 405
HhaI GCGC 6 cut(s) 73, 149, 184, 243, 368, 416
Hin1I GRCGYC 4 cut(s) 71, 147, 231, 366
Hin1II CATG 5 cut(s) 241, 346, 917, 941, 965
Hin6I GCGC 6 cut(s) 71, 147, 182, 241, 366, 414
HinP1I GCGC 6 cut(s) 71, 147, 182, 241, 366, 414
HinfI GANTC 3 cut(s) 287, 305, 703
HpaII CCGG 5 cut(s) 117, 313, 402, 411, 1124
HphI GGTGA 4 cut(s) 182, 476, 640, 1138
Hpy166II GTNNAC 3 cut(s) 57, 427, 707
Hpy188I TCNGA 4 cut(s) 465, 510, 601, 827
Hpy188III TCNNGA 7 cut(s) 161, 291, 318, 359, 569, 890, 1030
Hpy8I GTNNAC 3 cut(s) 57, 427, 707
Hpy99I CGWCG 4 cut(s) 28, 365, 374, 377
HpyAV CCTTC 6 cut(s) 167, 267, 442, 463, 619, 715
HpyCH4III ACNGT 4 cut(s) 506, 537, 718, 1116
HpyCH4V TGCA 9 cut(s) 4, 340, 588, 844, 872, 917, 979, 1038, 1068
Hsp92I GRCGYC 4 cut(s) 71, 147, 231, 366
Hsp92II CATG 5 cut(s) 241, 346, 917, 941, 965
HspAI GCGC 6 cut(s) 71, 147, 182, 241, 366, 414
KasI GGCGCC 3 cut(s) 70, 146, 365
KroI GCCGGC 2 cut(s) 401, 410
KroNI GCCGGC 2 cut(s) 403, 412
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 3 cut(s) 460, 1032, 1128
LguI GCTCTTC 1 cut(s) 567
LmnI GCTCC 2 cut(s) 213, 269
Lsp1109I GCAGC 7 cut(s) 196, 289, 406, 564, 763, 915, 1050
LweI GCATC 4 cut(s) 689, 763, 853, 859
MabI ACCWGGT 1 cut(s) 434
MaeI CTAG 3 cut(s) 281, 581, 1088
MaeIII GTNAC 2 cut(s) 512, 750
MalI GATC 3 cut(s) 462, 1034, 1130
MbiI CCGCTC 2 cut(s) 208, 264
MboI GATC 3 cut(s) 460, 1032, 1128
MboII GAAGA 7 cut(s) 239, 296, 483, 584, 675, 814, 905
MflI RGATCY 1 cut(s) 1032
MhlI GDGCHC 1 cut(s) 200
MluCI AATT 2 cut(s) 325, 642
Mly113I GGCGCC 3 cut(s) 71, 147, 366
MlyI GAGTC 2 cut(s) 296, 712
MroNI GCCGGC 2 cut(s) 401, 410
MroXI GAANNNNTTC 3 cut(s) 325, 452, 644
MseI TTAA 3 cut(s) 608, 671, 945
MslI CAYNNNNRTG 1 cut(s) 489
MspI CCGG 5 cut(s) 117, 313, 402, 411, 1124
MspR9I CCNGG 2 cut(s) 407, 436
MssI GTTTAAAC 1 cut(s) 946
MvaI CCWGG 2 cut(s) 407, 436
MvnI CGCG 2 cut(s) 319, 416
NaeI GCCGGC 2 cut(s) 403, 412
NarI GGCGCC 3 cut(s) 71, 147, 366
NdeII GATC 3 cut(s) 460, 1032, 1128
NgoMIV GCCGGC 2 cut(s) 401, 410
NheI GCTAGC 1 cut(s) 1087
NlaIII CATG 5 cut(s) 241, 346, 917, 941, 965
NlaIV GGNNCC 5 cut(s) 55, 72, 148, 367, 630
NmeAIII GCCGAG 2 cut(s) 87, 123
NmuCI GTSAC 1 cut(s) 512
NruI TCGCGA 1 cut(s) 319
NspI RCATGY 2 cut(s) 346, 965
PaqCI CACCTGC 1 cut(s) 73
PceI AGGCCT 1 cut(s) 452
PciSI GCTCTTC 1 cut(s) 567
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PdiI GCCGGC 2 cut(s) 403, 412
PdmI GAANNNNTTC 3 cut(s) 325, 452, 644
PfeI GAWTC 1 cut(s) 305
PleI GAGTC 2 cut(s) 295, 711
PluTI GGCGCC 3 cut(s) 74, 150, 369
PmeI GTTTAAAC 1 cut(s) 946
PpsI GAGTC 2 cut(s) 295, 711
Psp6I CCWGG 2 cut(s) 405, 434
PspGI CCWGG 2 cut(s) 405, 434
PspN4I GGNNCC 5 cut(s) 55, 72, 148, 367, 630
PspPI GGNCC 6 cut(s) 54, 100, 166, 432, 724, 1096
PstI CTGCAG 1 cut(s) 1040
PsuI RGATCY 1 cut(s) 1032
RruI TCGCGA 1 cut(s) 319
RsaI GTAC 1 cut(s) 983
RsaNI GTAC 1 cut(s) 982
RseI CAYNNNNRTG 1 cut(s) 489
SapI GCTCTTC 1 cut(s) 567
SaqAI TTAA 3 cut(s) 608, 671, 945
Sau3AI GATC 3 cut(s) 460, 1032, 1128
Sau96I GGNCC 6 cut(s) 54, 100, 166, 432, 724, 1096
ScaI AGTACT 1 cut(s) 983
SchI GAGTC 2 cut(s) 296, 712
ScrFI CCNGG 2 cut(s) 407, 436
SduI GDGCHC 1 cut(s) 200
SexAI ACCWGGT 1 cut(s) 434
SfaNI GCATC 4 cut(s) 689, 763, 853, 859
SfcI CTRYAG 1 cut(s) 1036
SfoI GGCGCC 3 cut(s) 72, 148, 367
SinI GGWCC 5 cut(s) 54, 100, 432, 724, 1096
SmiMI CAYNNNNRTG 1 cut(s) 489
Sse9I AATT 2 cut(s) 325, 642
SseBI AGGCCT 1 cut(s) 452
SspDI GGCGCC 3 cut(s) 70, 146, 365
SspMI CTAG 3 cut(s) 281, 581, 1088
StuI AGGCCT 1 cut(s) 452
StyD4I CCNGG 2 cut(s) 405, 434
TaaI ACNGT 4 cut(s) 506, 537, 718, 1116
TaqI TCGA 2 cut(s) 743, 801
TaqII GACCGA 1 cut(s) 1113
TasI AATT 2 cut(s) 325, 642
TatI WGTACW 1 cut(s) 981
TauI GCSGC 4 cut(s) 65, 76, 182, 208
TfiI GAWTC 1 cut(s) 305
Tru1I TTAA 3 cut(s) 608, 671, 945
Tru9I TTAA 3 cut(s) 608, 671, 945
TscAI CASTG 7 cut(s) 429, 450, 463, 693, 714, 723, 771
TseFI GTSAC 1 cut(s) 512
TseI GCWGC 7 cut(s) 184, 277, 394, 577, 776, 903, 1038
Tsp45I GTSAC 1 cut(s) 512
TspDTI ATGAA 4 cut(s) 240, 669, 725, 902
TspGWI ACGGA 2 cut(s) 804, 971
TspRI CASTG 7 cut(s) 429, 450, 463, 693, 714, 723, 771
VpaK11BI GGWCC 5 cut(s) 54, 100, 432, 724, 1096
XagI CCTNNNNNAGG 1 cut(s) 161
XapI RAATTY 1 cut(s) 642
XceI RCATGY 2 cut(s) 346, 965
XmnI GAANNNNTTC 3 cut(s) 325, 452, 644
XspI CTAG 3 cut(s) 281, 581, 1088
ZrmI AGTACT 1 cut(s) 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.