Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0004370

Physical Location & Seq

Genomic Coordinates Forward (+)

3235949 .. 3236840

Gene Structure 892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g03430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGACGATGCAGCAGCAGCAGCAACAACAGCAAGCAATGACCCAGAACTCCACGCCGCAGCCTCCCTCTGCGGTGTCCACCGCGGCGGAGGCGCCGCCAAAACAGGTGGCGCAGGCAATGGAGCGGCTTTCTCAAGCCGGCCGCCTCATCGCGGACATAAGGCTTGGCGCCGACCGCCCCCTCGAAGCCCTGTTCCTGGCCGCTCAGCCTCACCATAGCTCCATGCCTCTCCACTTGTTCCTCAACGAGGACGCCTCCATGCGCCAACACCTCCTCGACCTCCTCTCTCTCTCTCTCTCGGGTTTTATTCGCAATAAGCTATCTCGCATTGAAAAATCCACAAACTTTTTAGGGGTTTTGTGCTTATTTTTGTTAGGAAGGCAGCTGGAAGAATCTGGAGTTCTGAACGAGTCGCTGCGATCACGGAGCAATTCTTGGGGATTACATATGCCGTTGGTTTGCCCGGACGGCGCCGTCGTTGCGTATGCTTGGAAGCGGCAGCTGGCCGGCCAAGCTGGCGCGTCTGCTGTTGACAGGACCAGGTTAGCTCTCAAGGCCTTCACTGATCAGAAAAGGCATTTTTTCCCTCACCTTGACGAGGCGTCAAATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko04919 map04919

Pfam Domains

Protein Families

Med27

Protein Analysis

205

Amino Acids

22.55

Weight (kDa)

8.71

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004370)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09180 AT3G09180 AT3G09180
fragaria_vesca	FvH4_6g20290 FvH4_6g20290 FvH4_6g20290 FvH4_6g20290 FvH4_6g20290
malus_domestica	MD14G1038600.v1.1
prunus_persica	Prupe.7G094800_v2.0.a1 Prupe.7G094800_v2.0.a1 Prupe.7G094800_v2.0.a1
pyrus_communis	pycom12g03430
rosa_chinensis	RchiOBHm_Chr1g0331111 RchiOBHm_Chr1g0331121 RchiOBHm_Chr3g0475881
rosa_laevigata	RLG00000023803 RLG00000029753
rosa_multiflora	Rmu_sc0000539.1_g000094
rosa_roxburghii	Rroxscaffold_4G00319450 Rroxscaffold_6G00405760
rosa_rugosa	Rorug01G0093700 Rorug01G0093700 Rorug03G0151900
rosa_samantha	Rh1AG114200 Rh3AG202000 Rh3BG232500 Rh3CG227100 Rh3DG227600
rosa_wichuraiana	Rw1G009280 Rw3G018390 Rw3G018420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	473
AccB1I	GGYRCC	3 cut(s)	91, 167, 470
AccBSI	CCGCTC	2 cut(s)	124, 203
AccII	CGCG	3 cut(s)	83, 152, 521
AcoI	YGGCCR	4 cut(s)	139, 198, 504, 508
AcyI	GRCGYC	5 cut(s)	92, 168, 252, 471, 602
AfiI	CCNNNNNNNGG	4 cut(s)	151, 196, 247, 598
AgsI	TTSAA	1 cut(s)	332
AhdI	GACNNNNNGTC	1 cut(s)	601
AjnI	CCWGG	2 cut(s)	195, 539
AluBI	AGCT	6 cut(s)	219, 319, 385, 502, 515, 548
AluI	AGCT	6 cut(s)	219, 319, 385, 502, 515, 548
Ama87I	CYCGRG	1 cut(s)	298
AoxI	GGCC	5 cut(s)	139, 198, 504, 508, 555
ApeKI	GCWGC	8 cut(s)	10, 13, 16, 19, 58, 382, 415, 499
AspLEI	GCGC	6 cut(s)	94, 112, 170, 264, 473, 521
AspS9I	GGNCC	1 cut(s)	537
AsuC2I	CCSGG	1 cut(s)	464
AsuHPI	GGTGA	2 cut(s)	203, 581
AvaI	CYCGRG	1 cut(s)	298
AvaII	GGWCC	1 cut(s)	537
BanI	GGYRCC	3 cut(s)	91, 167, 470
BbvI	GCAGC	8 cut(s)	22, 25, 28, 31, 70, 394, 402, 511
BceAI	ACGGC	3 cut(s)	436, 458, 484
BciT130I	CCWGG	2 cut(s)	197, 541
BclI	TGATCA	1 cut(s)	565
BcnI	CCSGG	1 cut(s)	464
BfoI	RGCGCY	3 cut(s)	95, 171, 474
BglI	GCCNNNNNGGC	2 cut(s)	468, 516
BlpI	GCTNAGC	1 cut(s)	204
Bme1390I	CCNGG	3 cut(s)	197, 464, 541
Bme18I	GGWCC	1 cut(s)	537
BmeRI	GACNNNNNGTC	1 cut(s)	601
BmeT110I	CYCGRG	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	537
BmiI	GGNNCC	3 cut(s)	93, 169, 472
BmrFI	CCNGG	3 cut(s)	197, 464, 541
BplI	GAGNNNNNCTC	2 cut(s)	239, 271
BpmI	CTGGAG	1 cut(s)	417
Bpu1102I	GCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	2 cut(s)	117, 536
BpuMI	CCSGG	1 cut(s)	464
BsaHI	GRCGYC	5 cut(s)	92, 168, 252, 471, 602
BsaJI	CCNNGG	1 cut(s)	81
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	4 cut(s)	151, 196, 247, 598
Bse118I	RCCGGY	2 cut(s)	137, 506
Bse3DI	GCAATG	2 cut(s)	42, 123
BseBI	CCWGG	2 cut(s)	197, 541
BseDI	CCNNGG	1 cut(s)	81
BseLI	CCNNNNNNNGG	4 cut(s)	151, 196, 247, 598
BseMI	GCAATG	2 cut(s)	42, 123
BseMII	CTCAG	1 cut(s)	218
BseRI	GAGGAG	2 cut(s)	263, 272
BseX3I	CGGCCG	1 cut(s)	139
BseXI	GCAGC	8 cut(s)	22, 25, 28, 31, 70, 394, 402, 511
Bsh1236I	CGCG	3 cut(s)	83, 152, 521
Bsh1285I	CGRYCG	2 cut(s)	142, 175
BshFI	GGCC	5 cut(s)	141, 200, 506, 510, 557
BshNI	GGYRCC	3 cut(s)	91, 167, 470
BsiEI	CGRYCG	2 cut(s)	142, 175
BsiHKCI	CYCGRG	1 cut(s)	298
BsiSI	CCGG	3 cut(s)	138, 464, 507
BslI	CCNNNNNNNGG	4 cut(s)	151, 196, 247, 598
BsnI	GGCC	5 cut(s)	141, 200, 506, 510, 557
BsoBI	CYCGRG	1 cut(s)	298
Bsp143I	GATC	2 cut(s)	419, 565
Bsp1720I	GCTNAGC	1 cut(s)	204
BspANI	GGCC	5 cut(s)	141, 200, 506, 510, 557
BspCNI	CTCAG	1 cut(s)	217
BspFNI	CGCG	3 cut(s)	83, 152, 521
BspLI	GGNNCC	3 cut(s)	93, 169, 472
BspT107I	GGYRCC	3 cut(s)	91, 167, 470
BsrBI	CCGCTC	2 cut(s)	124, 203
BsrDI	GCAATG	2 cut(s)	42, 123
BsrFI	RCCGGY	2 cut(s)	137, 506
BssAI	RCCGGY	2 cut(s)	137, 506
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	2 cut(s)	419, 565
BssNI	GRCGYC	5 cut(s)	92, 168, 252, 471, 602
Bst2UI	CCWGG	2 cut(s)	197, 541
BstACI	GRCGYC	5 cut(s)	92, 168, 252, 471, 602
BstC8I	GCNNGC	6 cut(s)	33, 114, 139, 504, 508, 517
BstDEI	CTNAG	1 cut(s)	204
BstDSI	CCRYGG	1 cut(s)	81
BstENI	CCTNNNNNAGG	2 cut(s)	245, 596
BstFNI	CGCG	3 cut(s)	83, 152, 521
BstH2I	RGCGCY	3 cut(s)	95, 171, 474
BstHHI	GCGC	6 cut(s)	94, 112, 170, 264, 473, 521
BstKTI	GATC	2 cut(s)	422, 568
BstMBI	GATC	2 cut(s)	419, 565
BstMCI	CGRYCG	2 cut(s)	142, 175
BstNI	CCWGG	2 cut(s)	197, 541
BstSCI	CCNGG	3 cut(s)	195, 462, 539
BstUI	CGCG	3 cut(s)	83, 152, 521
BstV1I	GCAGC	8 cut(s)	22, 25, 28, 31, 70, 394, 402, 511
BstZI	CGGCCG	1 cut(s)	139
BsuRI	GGCC	5 cut(s)	141, 200, 506, 510, 557
BtgI	CCRYGG	1 cut(s)	81
BtgZI	GCGATG	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	561
Cac8I	GCNNGC	6 cut(s)	33, 114, 139, 504, 508, 517
CfoI	GCGC	6 cut(s)	94, 112, 170, 264, 473, 521
Cfr10I	RCCGGY	2 cut(s)	137, 506
Cfr13I	GGNCC	1 cut(s)	537
Cfr42I	CCGCGG	1 cut(s)	84
CseI	GACGC	3 cut(s)	260, 510, 591
CsiI	ACCWGGT	1 cut(s)	539
CspCI	CAANNNNNGTGG	2 cut(s)	87, 122
CviAII	CATG	2 cut(s)	223, 259
DdeI	CTNAG	1 cut(s)	204
DinI	GGCGCC	3 cut(s)	93, 169, 472
DpnI	GATC	2 cut(s)	421, 567
DpnII	GATC	2 cut(s)	419, 565
DrdI	GACNNNNNNGTC	1 cut(s)	473
DriI	GACNNNNNGTC	1 cut(s)	601
DseDI	GACNNNNNNGTC	1 cut(s)	473
EaeI	YGGCCR	4 cut(s)	139, 198, 504, 508
EagI	CGGCCG	1 cut(s)	139
Eam1105I	GACNNNNNGTC	1 cut(s)	601
EciI	GGCGGA	1 cut(s)	101
EclXI	CGGCCG	1 cut(s)	139
Eco147I	AGGCCT	1 cut(s)	557
Eco47I	GGWCC	1 cut(s)	537
Eco52I	CGGCCG	1 cut(s)	139
Eco88I	CYCGRG	1 cut(s)	298
EcoNI	CCTNNNNNAGG	2 cut(s)	245, 596
EcoRII	CCWGG	2 cut(s)	195, 539
EgeI	GGCGCC	3 cut(s)	93, 169, 472
EheI	GGCGCC	3 cut(s)	93, 169, 472
FaeI	CATG	2 cut(s)	226, 262
FaiI	YATR	7 cut(s)	158, 216, 224, 260, 447, 449, 486
FatI	CATG	2 cut(s)	222, 258
FauNDI	CATATG	1 cut(s)	447
FbaI	TGATCA	1 cut(s)	565
FseI	GGCCGGCC	1 cut(s)	510
GlaI	GCGC	6 cut(s)	93, 111, 169, 263, 472, 520
GsuI	CTGGAG	1 cut(s)	417
HaeII	RGCGCY	3 cut(s)	95, 171, 474
HaeIII	GGCC	5 cut(s)	141, 200, 506, 510, 557
HapII	CCGG	3 cut(s)	138, 464, 507
HgaI	GACGC	3 cut(s)	260, 510, 591
HhaI	GCGC	6 cut(s)	94, 112, 170, 264, 473, 521
Hin1I	GRCGYC	5 cut(s)	92, 168, 252, 471, 602
Hin1II	CATG	2 cut(s)	226, 262
Hin6I	GCGC	6 cut(s)	92, 110, 168, 262, 471, 519
HinP1I	GCGC	6 cut(s)	92, 110, 168, 262, 471, 519
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HinfI	GANTC	2 cut(s)	392, 410
HpaII	CCGG	3 cut(s)	138, 464, 507
HphI	GGTGA	2 cut(s)	203, 581
Hpy166II	GTNNAC	2 cut(s)	78, 532
Hpy188I	TCNGA	2 cut(s)	405, 570
Hpy188III	TCNNGA	1 cut(s)	396
Hpy8I	GTNNAC	2 cut(s)	78, 532
Hpy99I	CGWCG	1 cut(s)	479
HpyAV	CCTTC	2 cut(s)	372, 568
HpyCH4V	TGCA	1 cut(s)	10
HpyF3I	CTNAG	1 cut(s)	204
Hsp92I	GRCGYC	5 cut(s)	92, 168, 252, 471, 602
Hsp92II	CATG	2 cut(s)	226, 262
HspAI	GCGC	6 cut(s)	92, 110, 168, 262, 471, 519
KasI	GGCGCC	3 cut(s)	91, 167, 470
KroI	GCCGGC	2 cut(s)	137, 506
KroNI	GCCGGC	2 cut(s)	139, 508
Ksp22I	TGATCA	1 cut(s)	565
KspI	CCGCGG	1 cut(s)	84
Kzo9I	GATC	2 cut(s)	419, 565
LmnI	GCTCC	3 cut(s)	121, 224, 426
Lsp1109I	GCAGC	8 cut(s)	22, 25, 28, 31, 70, 394, 402, 511
MabI	ACCWGGT	1 cut(s)	539
MalI	GATC	2 cut(s)	421, 567
MbiI	CCGCTC	2 cut(s)	124, 203
MboI	GATC	2 cut(s)	419, 565
MboII	GAAGA	1 cut(s)	401
MluCI	AATT	1 cut(s)	430
Mly113I	GGCGCC	3 cut(s)	92, 168, 471
MlyI	GAGTC	1 cut(s)	419
MroNI	GCCGGC	2 cut(s)	137, 506
MspA1I	CMGCKG	3 cut(s)	83, 385, 502
MspI	CCGG	3 cut(s)	138, 464, 507
MspR9I	CCNGG	3 cut(s)	197, 464, 541
MvaI	CCWGG	2 cut(s)	197, 541
MvnI	CGCG	3 cut(s)	83, 152, 521
NaeI	GCCGGC	2 cut(s)	139, 508
NarI	GGCGCC	3 cut(s)	92, 168, 471
NciI	CCSGG	1 cut(s)	464
NdeI	CATATG	1 cut(s)	447
NdeII	GATC	2 cut(s)	419, 565
NgoMIV	GCCGGC	2 cut(s)	137, 506
NlaIII	CATG	2 cut(s)	226, 262
NlaIV	GGNNCC	3 cut(s)	93, 169, 472
PceI	AGGCCT	1 cut(s)	557
PcsI	WCGNNNNNNNCGW	1 cut(s)	474
PdiI	GCCGGC	2 cut(s)	139, 508
PfeI	GAWTC	1 cut(s)	392
PleI	GAGTC	1 cut(s)	418
PluTI	GGCGCC	3 cut(s)	95, 171, 474
PpsI	GAGTC	1 cut(s)	418
Psp6I	CCWGG	2 cut(s)	195, 539
PspGI	CCWGG	2 cut(s)	195, 539
PspN4I	GGNNCC	3 cut(s)	93, 169, 472
PspPI	GGNCC	1 cut(s)	537
PvuII	CAGCTG	2 cut(s)	385, 502
RigI	GGCCGGCC	1 cut(s)	510
SacII	CCGCGG	1 cut(s)	84
Sau3AI	GATC	2 cut(s)	419, 565
Sau96I	GGNCC	1 cut(s)	537
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	3 cut(s)	197, 464, 541
SexAI	ACCWGGT	1 cut(s)	539
SfoI	GGCGCC	3 cut(s)	93, 169, 472
Sfr303I	CCGCGG	1 cut(s)	84
SgrBI	CCGCGG	1 cut(s)	84
SinI	GGWCC	1 cut(s)	537
SmlI	CTYRAG	2 cut(s)	132, 551
SmoI	CTYRAG	2 cut(s)	132, 551
Sse9I	AATT	1 cut(s)	430
SseBI	AGGCCT	1 cut(s)	557
SspDI	GGCGCC	3 cut(s)	91, 167, 470
StuI	AGGCCT	1 cut(s)	557
StyD4I	CCNGG	3 cut(s)	195, 462, 539
TaqI	TCGA	2 cut(s)	183, 276
TasI	AATT	1 cut(s)	430
TauI	GCSGC	7 cut(s)	58, 86, 97, 127, 144, 203, 499
TfiI	GAWTC	1 cut(s)	392
TscAI	CASTG	1 cut(s)	568
TseI	GCWGC	8 cut(s)	10, 13, 16, 19, 58, 382, 415, 499
TspGWI	ACGGA	1 cut(s)	439
TspRI	CASTG	1 cut(s)	568
VpaK11BI	GGWCC	1 cut(s)	537
XagI	CCTNNNNNAGG	2 cut(s)	245, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.