Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005770

Physical Location & Seq

Genomic Coordinates Forward (+)

18229452 .. 18234725

Gene Structure 5274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g24170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGAGGTATATATCAGCACTCTCAGATGATATGGAGCAACCTAGTTTAGGAAGAGCCGTTTCATCAGGATGGCCTGCCTCTCTACACTTGATTGGCAAGGATATTTTACGTTTTCATGCAGTGTACTGGCCAGCTATGCTAATGTCTGCTGGACTGGGCCTTCCTAAGATGGTGTTTGGCCATGGGTTCTTGACAAAGGATGGTATGAAGATGGGGAAATCACTAGGGAATACAATTGAACCAAATGATTTGGTTCATAAATTCGGGTCTGATGCGGTCAGGTACTTCTTCATCAGGGAGGTGGAATTTGGTAGTGATGGGGATTATTCAGAAGATCATTTCATCAATATTGTGAATGCTCATCTTGCCAATTCAATCGGAAATCTGCTTAACCGCACTCTGGGCCTTCTTAAGAAGAACTGCCAATCTACTTTGGTAATTGATTCAAGTACTGCAGCTGAAGGAACTACATTCAAGGACACTGTGGAAAAGTTGGTTGAAAAAGCTCGGGTTGATTATGAAAACCTCTCACTATCATCAGCTTGTGAGGCTGTTCTTGAGATCAGCAATGCTGGAAATTCATACATGGATGGGTGTGCACCATGGTCTCTCTTTAAGCATGGGGGTGATGCAAGTGAAGCTGCTGCAAAGGACCTTGTAATAATATTAGAAGCAATGCGGATTATAGCTATTGCATTATCCCCTGTCACACCAAGTTTAAGTTGGAGAATATATGGACAGCTTGGCTACTCAAAGGATCAGTTTGATGCTGCTATCTGGAGTGACACCAAGTGGGGTGGGCTTAAAAGTGGTCAGGTCATGGCTCAACCTCAACCAATTTTTGCAAGAATTGAAAGCCAGACAGAAGAAGAGAAGGGGGTCCAAGCACCGGAAGCACCCAAAAAGATGAAAAAGAACAAGTTACCAAAGCCCCAACAGGTGGTTGAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004825 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006431 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090567 GO:0099402 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g

Protein Analysis

318

Amino Acids

34.67

Weight (kDa)

6.01

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1g	PF09334	3 - 134	6.1e-35	tRNA synthetases class I (M)
tRNA-synt_1	PF00133	18 - 102	1.3e-09	tRNA synthetases class I (I, L, M and V)
Anticodon_3	PF19303	153 - 291	1.6e-11	Anticodon binding domain of methionyl tRNA ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55400 AT3G55400
fragaria_vesca	FvH4_6g24170 FvH4_6g24170 FvH4_6g51210 FvH4_6g51210 FvH4_6g51210 FvH4_6g51210
malus_domestica	MD01G1125100.v1.1 MD07G1194800.v1.1
prunus_persica	Prupe.2G232400_v2.0.a1 Prupe.2G232400_v2.0.a1
pyrus_communis	pycom01g15130 pycom07g18350 pycom07g18360
rosa_chinensis	RchiOBHm_Chr3g0482991 RchiOBHm_Chr3g0483011
rosa_laevigata	RLG00000023307 RLG00000023309
rosa_multiflora	Rmu_sc0003351.1_g000014
rosa_roxburghii	Rroxscaffold_6G00398740
rosa_rugosa	Rorug03G0202800
rosa_samantha	Rh3AG251600 Rh3BG288100 Rh3CG285600 Rh3DG281300
rosa_wichuraiana	Rw3G022730 Rw3G022760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	940
AciI	CCGC	3 cut(s)	275, 394, 679
AclWI	GGATC	1 cut(s)	765
AcoI	YGGCCR	2 cut(s)	128, 178
AcsI	RAATTY	3 cut(s)	260, 305, 577
AcuI	CTGAAG	1 cut(s)	480
AdeI	CACNNNGTG	1 cut(s)	792
AfaI	GTAC	3 cut(s)	125, 284, 451
AfiI	CCNNNNNNNGG	4 cut(s)	47, 400, 889, 940
AflII	CTTAAG	1 cut(s)	410
AgsI	TTSAA	7 cut(s)	239, 375, 447, 475, 500, 854, 947
AluBI	AGCT	8 cut(s)	134, 458, 506, 542, 641, 689, 742, 950
AluI	AGCT	8 cut(s)	134, 458, 506, 542, 641, 689, 742, 950
Alw21I	GWGCWC	1 cut(s)	601
Alw26I	GTCTC	1 cut(s)	612
Alw44I	GTGCAC	1 cut(s)	597
AlwI	GGATC	1 cut(s)	765
Ama87I	CYCGRG	1 cut(s)	507
AoxI	GGCC	5 cut(s)	71, 128, 157, 178, 403
ApaLI	GTGCAC	1 cut(s)	597
ApeKI	GCWGC	4 cut(s)	455, 641, 644, 770
ApoI	RAATTY	3 cut(s)	260, 305, 577
AspS9I	GGNCC	4 cut(s)	157, 403, 652, 880
AsuHPI	GGTGA	1 cut(s)	638
AvaI	CYCGRG	1 cut(s)	507
AvaII	GGWCC	2 cut(s)	652, 880
BaeGI	GKGCMC	1 cut(s)	601
BalI	TGGCCA	2 cut(s)	130, 180
Bbv12I	GWGCWC	1 cut(s)	601
BbvI	GCAGC	4 cut(s)	467, 628, 631, 757
BccI	CCATC	6 cut(s)	63, 163, 194, 205, 311, 584
BceAI	ACGGC	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	612
BfaI	CTAG	2 cut(s)	42, 224
BfmI	CTRYAG	1 cut(s)	453
BfrI	CTTAAG	1 cut(s)	410
BisI	GCNGC	4 cut(s)	456, 642, 645, 771
BlsI	GCNGC	4 cut(s)	457, 643, 646, 772
BmcAI	AGTACT	1 cut(s)	451
Bme18I	GGWCC	2 cut(s)	652, 880
BmeT110I	CYCGRG	1 cut(s)	507
BmgT120I	GGNCC	4 cut(s)	157, 403, 652, 880
BmiI	GGNNCC	1 cut(s)	881
BmrI	ACTGGG	1 cut(s)	164
BmsI	GCATC	3 cut(s)	262, 619, 757
BmuI	ACTGGG	1 cut(s)	164
BpmI	CTGGAG	1 cut(s)	799
BpuEI	CTTGAG	1 cut(s)	578
BsaI	GGTCTC	1 cut(s)	612
BsaJI	CCNNGG	2 cut(s)	181, 602
BsaWI	WCCGGW	1 cut(s)	889
Bsc4I	CCNNNNNNNGG	4 cut(s)	47, 400, 889, 940
Bse1I	ACTGG	2 cut(s)	131, 159
Bse3DI	GCAATG	2 cut(s)	574, 681
BseDI	CCNNGG	2 cut(s)	181, 602
BseGI	GGATG	3 cut(s)	74, 205, 595
BseLI	CCNNNNNNNGG	4 cut(s)	47, 400, 889, 940
BseMI	GCAATG	2 cut(s)	574, 681
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	2 cut(s)	131, 159
BseSI	GKGCMC	1 cut(s)	601
BseXI	GCAGC	4 cut(s)	467, 628, 631, 757
BshFI	GGCC	5 cut(s)	73, 130, 159, 180, 405
BsiHKAI	GWGCWC	1 cut(s)	601
BsiHKCI	CYCGRG	1 cut(s)	507
BsiSI	CCGG	1 cut(s)	890
BslI	CCNNNNNNNGG	4 cut(s)	47, 400, 889, 940
BsmAI	GTCTC	1 cut(s)	612
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	5 cut(s)	73, 130, 159, 180, 405
Bso31I	GGTCTC	1 cut(s)	612
BsoBI	CYCGRG	1 cut(s)	507
Bsp1286I	GDGCHC	1 cut(s)	601
Bsp143I	GATC	3 cut(s)	334, 561, 757
Bsp19I	CCATGG	2 cut(s)	181, 602
BspACI	CCGC	3 cut(s)	275, 394, 679
BspANI	GGCC	5 cut(s)	73, 130, 159, 180, 405
BspCNI	CTCAG	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	881
BspMAI	CTGCAG	1 cut(s)	457
BspPI	GGATC	1 cut(s)	765
BspQI	GCTCTTC	1 cut(s)	46
BspTI	CTTAAG	1 cut(s)	410
BspTNI	GGTCTC	1 cut(s)	612
BsrDI	GCAATG	2 cut(s)	574, 681
BsrI	ACTGG	2 cut(s)	131, 159
BssECI	CCNNGG	2 cut(s)	181, 602
BssMI	GATC	3 cut(s)	334, 561, 757
BssT1I	CCWWGG	2 cut(s)	181, 602
Bst4CI	ACNGT	1 cut(s)	484
Bst6I	CTCTTC	2 cut(s)	46, 864
BstAFI	CTTAAG	1 cut(s)	410
BstC8I	GCNNGC	2 cut(s)	75, 132
BstDEI	CTNAG	2 cut(s)	22, 165
BstDSI	CCRYGG	2 cut(s)	181, 602
BstENI	CCTNNNNNAGG	1 cut(s)	45
BstF5I	GGATG	3 cut(s)	74, 205, 595
BstKTI	GATC	3 cut(s)	337, 564, 760
BstMAI	GTCTC	1 cut(s)	612
BstMBI	GATC	3 cut(s)	334, 561, 757
BstMWI	GCNNNNNNNGC	6 cut(s)	136, 365, 402, 548, 638, 893
BstSFI	CTRYAG	1 cut(s)	453
BstSLI	GKGCMC	1 cut(s)	601
BstV1I	GCAGC	4 cut(s)	467, 628, 631, 757
BsuRI	GGCC	5 cut(s)	73, 130, 159, 180, 405
BtgI	CCRYGG	2 cut(s)	181, 602
BtsCI	GGATG	3 cut(s)	74, 205, 595
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	2 cut(s)	126, 480
Cac8I	GCNNGC	2 cut(s)	75, 132
Cfr13I	GGNCC	4 cut(s)	157, 403, 652, 880
Csp6I	GTAC	3 cut(s)	124, 283, 450
CspCI	CAANNNNNGTGG	2 cut(s)	778, 813
CviAII	CATG	6 cut(s)	116, 182, 586, 603, 620, 820
CviQI	GTAC	3 cut(s)	124, 283, 450
DdeI	CTNAG	2 cut(s)	22, 165
DpnI	GATC	3 cut(s)	336, 563, 759
DpnII	GATC	3 cut(s)	334, 561, 757
DraIII	CACNNNGTG	1 cut(s)	792
EaeI	YGGCCR	2 cut(s)	128, 178
Eam1104I	CTCTTC	2 cut(s)	46, 864
EarI	CTCTTC	2 cut(s)	46, 864
Eco130I	CCWWGG	2 cut(s)	181, 602
Eco31I	GGTCTC	1 cut(s)	612
Eco47I	GGWCC	2 cut(s)	652, 880
Eco57I	CTGAAG	1 cut(s)	480
Eco88I	CYCGRG	1 cut(s)	507
EcoNI	CCTNNNNNAGG	1 cut(s)	45
EcoO109I	RGGNCCY	1 cut(s)	652
EcoT14I	CCWWGG	2 cut(s)	181, 602
ErhI	CCWWGG	2 cut(s)	181, 602
FaeI	CATG	6 cut(s)	119, 185, 589, 606, 623, 823
FatI	CATG	6 cut(s)	115, 181, 585, 602, 619, 819
Fnu4HI	GCNGC	4 cut(s)	456, 642, 645, 771
FokI	GGATG	3 cut(s)	81, 212, 602
Fsp4HI	GCNGC	4 cut(s)	456, 642, 645, 771
FspBI	CTAG	2 cut(s)	42, 224
GluI	GCNGC	4 cut(s)	456, 642, 645, 771
GsuI	CTGGAG	1 cut(s)	799
HaeIII	GGCC	5 cut(s)	73, 130, 159, 180, 405
HapII	CCGG	1 cut(s)	890
Hin1II	CATG	6 cut(s)	119, 185, 589, 606, 623, 823
HindIII	AAGCTT	1 cut(s)	948
HinfI	GANTC	1 cut(s)	443
HpaII	CCGG	1 cut(s)	890
HphI	GGTGA	1 cut(s)	638
Hpy166II	GTNNAC	2 cut(s)	124, 599
Hpy188I	TCNGA	4 cut(s)	25, 271, 331, 380
Hpy188III	TCNNGA	4 cut(s)	66, 190, 557, 778
Hpy8I	GTNNAC	2 cut(s)	124, 599
HpyAV	CCTTC	4 cut(s)	170, 416, 455, 868
HpyCH4III	ACNGT	1 cut(s)	484
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	7 cut(s)	119, 455, 599, 632, 647, 695, 845
HpyF10VI	GCNNNNNNNGC	6 cut(s)	136, 365, 402, 548, 638, 893
HpyF3I	CTNAG	2 cut(s)	22, 165
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	6 cut(s)	119, 185, 589, 606, 623, 823
Kzo9I	GATC	3 cut(s)	334, 561, 757
LguI	GCTCTTC	1 cut(s)	46
LmnI	GCTCC	1 cut(s)	34
Lsp1109I	GCAGC	4 cut(s)	467, 628, 631, 757
LweI	GCATC	3 cut(s)	262, 619, 757
MaeI	CTAG	2 cut(s)	42, 224
MaeII	ACGT	1 cut(s)	109
MaeIII	GTNAC	3 cut(s)	706, 782, 921
MalI	GATC	3 cut(s)	336, 563, 759
MboI	GATC	3 cut(s)	334, 561, 757
MboII	GAAGA	7 cut(s)	63, 220, 280, 344, 427, 878, 881
MfeI	CAATTG	1 cut(s)	234
MhlI	GDGCHC	1 cut(s)	601
MlsI	TGGCCA	2 cut(s)	130, 180
MluCI	AATT	8 cut(s)	234, 260, 305, 370, 438, 577, 837, 849
MluNI	TGGCCA	2 cut(s)	130, 180
MmeI	TCCRAC	1 cut(s)	704
MnlI	CCTC	5 cut(s)	88, 292, 536, 541, 840
Mox20I	TGGCCA	2 cut(s)	130, 180
MscI	TGGCCA	2 cut(s)	130, 180
MseI	TTAA	6 cut(s)	390, 411, 615, 719, 804, 952
MslI	CAYNNNNRTG	2 cut(s)	67, 624
Msp20I	TGGCCA	2 cut(s)	130, 180
MspA1I	CMGCKG	1 cut(s)	458
MspCI	CTTAAG	1 cut(s)	410
MspI	CCGG	1 cut(s)	890
MunI	CAATTG	1 cut(s)	234
Mva1269I	GAATGC	1 cut(s)	361
MwoI	GCNNNNNNNGC	6 cut(s)	136, 365, 402, 548, 638, 893
NcoI	CCATGG	2 cut(s)	181, 602
NdeII	GATC	3 cut(s)	334, 561, 757
NlaIII	CATG	6 cut(s)	119, 185, 589, 606, 623, 823
NlaIV	GGNNCC	1 cut(s)	881
NmuCI	GTSAC	2 cut(s)	706, 782
PciSI	GCTCTTC	1 cut(s)	46
PctI	GAATGC	1 cut(s)	361
PfeI	GAWTC	1 cut(s)	443
PflMI	CCANNNNNTGG	1 cut(s)	940
PkrI	GCNGC	4 cut(s)	457, 643, 646, 772
PpuMI	RGGWCCY	1 cut(s)	652
Psp5II	RGGWCCY	1 cut(s)	652
PspN4I	GGNNCC	1 cut(s)	881
PspPI	GGNCC	4 cut(s)	157, 403, 652, 880
PspPPI	RGGWCCY	1 cut(s)	652
PstI	CTGCAG	1 cut(s)	457
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	3 cut(s)	125, 284, 451
RsaNI	GTAC	3 cut(s)	124, 283, 450
RseI	CAYNNNNRTG	2 cut(s)	67, 624
SapI	GCTCTTC	1 cut(s)	46
SaqAI	TTAA	6 cut(s)	390, 411, 615, 719, 804, 952
SatI	GCNGC	4 cut(s)	456, 642, 645, 771
Sau3AI	GATC	3 cut(s)	334, 561, 757
Sau96I	GGNCC	4 cut(s)	157, 403, 652, 880
ScaI	AGTACT	1 cut(s)	451
SduI	GDGCHC	1 cut(s)	601
SfaNI	GCATC	3 cut(s)	262, 619, 757
SfcI	CTRYAG	1 cut(s)	453
SinI	GGWCC	2 cut(s)	652, 880
SmiMI	CAYNNNNRTG	2 cut(s)	67, 624
SmlI	CTYRAG	2 cut(s)	410, 557
SmoI	CTYRAG	2 cut(s)	410, 557
Sse9I	AATT	8 cut(s)	234, 260, 305, 370, 438, 577, 837, 849
SsiI	CCGC	3 cut(s)	275, 394, 679
SspI	AATATT	2 cut(s)	349, 666
SspMI	CTAG	2 cut(s)	42, 224
StyI	CCWWGG	2 cut(s)	181, 602
TaaI	ACNGT	1 cut(s)	484
TaiI	ACGT	1 cut(s)	112
TasI	AATT	8 cut(s)	234, 260, 305, 370, 438, 577, 837, 849
TatI	WGTACW	2 cut(s)	123, 449
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	6 cut(s)	390, 411, 615, 719, 804, 952
Tru9I	TTAA	6 cut(s)	390, 411, 615, 719, 804, 952
TscAI	CASTG	2 cut(s)	126, 487
TseFI	GTSAC	2 cut(s)	706, 782
TseI	GCWGC	4 cut(s)	455, 641, 644, 770
Tsp45I	GTSAC	2 cut(s)	706, 782
TspDTI	ATGAA	9 cut(s)	51, 104, 221, 245, 280, 331, 534, 570, 923
TspRI	CASTG	2 cut(s)	126, 487
Van91I	CCANNNNNTGG	1 cut(s)	940
Vha464I	CTTAAG	1 cut(s)	410
VneI	GTGCAC	1 cut(s)	597
VpaK11BI	GGWCC	2 cut(s)	652, 880
XagI	CCTNNNNNAGG	1 cut(s)	45
XapI	RAATTY	3 cut(s)	260, 305, 577
XcmI	CCANNNNNNNNNTGG	1 cut(s)	720
XspI	CTAG	2 cut(s)	42, 224
ZrmI	AGTACT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.