Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005770

Physical Location & Seq

Genomic Coordinates Reverse (-)

29087201 .. 29089113

Gene Structure 1913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44780

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGATTTGGAGGGAGGTGGAATTTGGTGGTGATGGGGATTATTCAGAAGATCGTTTCATCAATATTGTCAATGCTCATCTTGCCAATTCAATCGGAAATCTGCTTAACCGCACTCTGGGGCTTCTTAAGAAGAACTGCCAATCTACTTTGGTAATTGATTCAAGTATCGCAGCTGAAGGAACTACATTCAAGGACACTGTGGAGAAGTTGGTAATATTTTCATCAAACTTTGAACACCATCATGATTTCCAAGTGTACAAACTAGTGGAATTTCTAAATGTAGAAGGTGGCTCAGGTTTGCAGGCCATGGAAGCCTTCTTGCAAGACCTTGTGATAATACTAGAAGCAATGAGGGTTATAGCTATTGCATTATCCCCTGTCACACCAAGTTTAAGTTGGAGAATATATCGACAGCTTGGCTACTCAAAGGATCAGTTTGATGCTGCTACCTGGAGTGACACCAGGTGGGGTGGGCTTAAAGGTGGTCAGGTCATGGCTCAACCTCAACCAATATTTGCAAGGATTGAAAGCCAAACAGAAGGAGAAAATAGGGTCGAAGCACCCAAAAAGGTGCAAAAGGAACAAGTTACCGGAGTCTCAAGAGGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004825 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006431 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090567 GO:0099402 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g

Protein Analysis

203

Amino Acids

22.59

Weight (kDa)

5.42

Isoelectric Point (pI)

31.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55400 AT3G55400
fragaria_vesca	FvH4_6g24170 FvH4_6g24170 FvH4_6g51210 FvH4_6g51210 FvH4_6g51210 FvH4_6g51210
malus_domestica	MD01G1125100.v1.1 MD07G1194800.v1.1
prunus_persica	Prupe.2G232400_v2.0.a1 Prupe.2G232400_v2.0.a1
pyrus_communis	pycom01g15130 pycom07g18350 pycom07g18360
rosa_chinensis	RchiOBHm_Chr3g0482991 RchiOBHm_Chr3g0483011
rosa_laevigata	RLG00000023307 RLG00000023309
rosa_multiflora	Rmu_sc0003351.1_g000014
rosa_roxburghii	Rroxscaffold_6G00398740
rosa_rugosa	Rorug03G0202800
rosa_samantha	Rh3AG251600 Rh3BG288100 Rh3CG285600 Rh3DG281300
rosa_wichuraiana	Rw3G022730 Rw3G022760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	109
AclWI	GGATC	1 cut(s)	438
AcsI	RAATTY	2 cut(s)	20, 269
AcuI	CTGAAG	1 cut(s)	195
AdeI	CACNNNGTG	1 cut(s)	465
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	115
AflII	CTTAAG	1 cut(s)	125
AgsI	TTSAA	5 cut(s)	90, 162, 190, 233, 527
AhlI	ACTAGT	1 cut(s)	262
AjnI	CCWGG	2 cut(s)	449, 461
AluBI	AGCT	3 cut(s)	173, 362, 415
AluI	AGCT	3 cut(s)	173, 362, 415
Alw26I	GTCTC	1 cut(s)	601
AlwI	GGATC	1 cut(s)	438
AoxI	GGCC	1 cut(s)	303
ApeKI	GCWGC	2 cut(s)	170, 443
ApoI	RAATTY	2 cut(s)	20, 269
AsuHPI	GGTGA	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	182, 430
BccI	CCATC	2 cut(s)	26, 246
BciT130I	CCWGG	2 cut(s)	451, 463
BcoDI	GTCTC	1 cut(s)	601
BcuI	ACTAGT	1 cut(s)	262
BfaI	CTAG	2 cut(s)	263, 341
BfrI	CTTAAG	1 cut(s)	125
BisI	GCNGC	2 cut(s)	171, 444
BlsI	GCNGC	2 cut(s)	172, 445
Bme1390I	CCNGG	2 cut(s)	451, 463
BmrFI	CCNGG	2 cut(s)	451, 463
BmsI	GCATC	1 cut(s)	430
BpmI	CTGGAG	1 cut(s)	472
Bpu10I	CCTNAGC	1 cut(s)	292
BpuEI	CTTGAG	1 cut(s)	583
BsaJI	CCNNGG	1 cut(s)	306
BsaWI	WCCGGW	1 cut(s)	590
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse3DI	GCAATG	1 cut(s)	354
BseBI	CCWGG	2 cut(s)	451, 463
BseDI	CCNNGG	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	1 cut(s)	306
BseXI	GCAGC	2 cut(s)	182, 430
BshFI	GGCC	1 cut(s)	305
BsiSI	CCGG	1 cut(s)	591
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	601
BsnI	GGCC	1 cut(s)	305
Bsp1407I	TGTACA	1 cut(s)	255
Bsp143I	GATC	2 cut(s)	49, 430
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	1 cut(s)	305
BspCNI	CTCAG	1 cut(s)	305
BspHI	TCATGA	1 cut(s)	241
BspPI	GGATC	1 cut(s)	438
BspTI	CTTAAG	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	354
BsrGI	TGTACA	1 cut(s)	255
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	2 cut(s)	49, 430
BssT1I	CCWWGG	1 cut(s)	306
Bst2UI	CCWGG	2 cut(s)	451, 463
Bst4CI	ACNGT	1 cut(s)	199
BstAFI	CTTAAG	1 cut(s)	125
BstAUI	TGTACA	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	1 cut(s)	292
BstDSI	CCRYGG	1 cut(s)	306
BstKTI	GATC	2 cut(s)	52, 433
BstMAI	GTCTC	1 cut(s)	601
BstMBI	GATC	2 cut(s)	49, 430
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 311
BstNI	CCWGG	2 cut(s)	451, 463
BstSCI	CCNGG	2 cut(s)	449, 461
BstV1I	GCAGC	2 cut(s)	182, 430
BsuRI	GGCC	1 cut(s)	305
BtgI	CCRYGG	1 cut(s)	306
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	303
CciI	TCATGA	1 cut(s)	241
CsiI	ACCWGGT	1 cut(s)	461
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	3 cut(s)	242, 307, 493
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	1 cut(s)	292
DpnI	GATC	2 cut(s)	51, 432
DpnII	GATC	2 cut(s)	49, 430
DraIII	CACNNNGTG	1 cut(s)	465
Eco130I	CCWWGG	1 cut(s)	306
Eco57I	CTGAAG	1 cut(s)	195
EcoRII	CCWGG	2 cut(s)	449, 461
EcoT14I	CCWWGG	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	3 cut(s)	245, 310, 496
FaiI	YATR	5 cut(s)	243, 308, 359, 406, 494
FatI	CATG	3 cut(s)	241, 306, 492
Fnu4HI	GCNGC	2 cut(s)	171, 444
Fsp4HI	GCNGC	2 cut(s)	171, 444
FspBI	CTAG	2 cut(s)	263, 341
GluI	GCNGC	2 cut(s)	171, 444
GsuI	CTGGAG	1 cut(s)	472
HaeIII	GGCC	1 cut(s)	305
HapII	CCGG	1 cut(s)	591
Hin1II	CATG	3 cut(s)	245, 310, 496
HinfI	GANTC	2 cut(s)	158, 594
HpaII	CCGG	1 cut(s)	591
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	2 cut(s)	46, 95
Hpy188III	TCNNGA	2 cut(s)	242, 600
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	4 cut(s)	170, 278, 325, 533
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	5 cut(s)	301, 322, 368, 518, 574
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 311
HpyF3I	CTNAG	1 cut(s)	292
Hsp92II	CATG	3 cut(s)	245, 310, 496
Kzo9I	GATC	2 cut(s)	49, 430
Lsp1109I	GCAGC	2 cut(s)	182, 430
LweI	GCATC	1 cut(s)	430
MabI	ACCWGGT	1 cut(s)	461
MaeI	CTAG	2 cut(s)	263, 341
MaeIII	GTNAC	3 cut(s)	379, 455, 586
MalI	GATC	2 cut(s)	51, 432
MboI	GATC	2 cut(s)	49, 430
MboII	GAAGA	2 cut(s)	59, 142
MluCI	AATT	4 cut(s)	20, 85, 153, 269
MlyI	GAGTC	1 cut(s)	603
MmeI	TCCRAC	1 cut(s)	377
MnlI	CCTC	5 cut(s)	3, 7, 345, 513, 596
MseI	TTAA	4 cut(s)	105, 126, 392, 477
MslI	CAYNNNNRTG	1 cut(s)	240
MspA1I	CMGCKG	1 cut(s)	173
MspCI	CTTAAG	1 cut(s)	125
MspI	CCGG	1 cut(s)	591
MspR9I	CCNGG	2 cut(s)	451, 463
MvaI	CCWGG	2 cut(s)	451, 463
MwoI	GCNNNNNNNGC	2 cut(s)	80, 311
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	2 cut(s)	49, 430
NlaIII	CATG	3 cut(s)	245, 310, 496
NmuCI	GTSAC	2 cut(s)	379, 455
PagI	TCATGA	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	2 cut(s)	172, 445
PleI	GAGTC	1 cut(s)	602
PpsI	GAGTC	1 cut(s)	602
Psp6I	CCWGG	2 cut(s)	449, 461
PspGI	CCWGG	2 cut(s)	449, 461
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
RseI	CAYNNNNRTG	1 cut(s)	240
SaqAI	TTAA	4 cut(s)	105, 126, 392, 477
SatI	GCNGC	2 cut(s)	171, 444
Sau3AI	GATC	2 cut(s)	49, 430
SchI	GAGTC	1 cut(s)	603
ScrFI	CCNGG	2 cut(s)	451, 463
SexAI	ACCWGGT	1 cut(s)	461
SfaNI	GCATC	1 cut(s)	430
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	2 cut(s)	125, 598
SmoI	CTYRAG	2 cut(s)	125, 598
SpeI	ACTAGT	1 cut(s)	262
Sse9I	AATT	4 cut(s)	20, 85, 153, 269
SsiI	CCGC	1 cut(s)	109
SspI	AATATT	3 cut(s)	64, 216, 513
SspMI	CTAG	2 cut(s)	263, 341
StyD4I	CCNGG	2 cut(s)	449, 461
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	2 cut(s)	409, 555
TasI	AATT	4 cut(s)	20, 85, 153, 269
TatI	WGTACW	1 cut(s)	255
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	4 cut(s)	105, 126, 392, 477
Tru9I	TTAA	4 cut(s)	105, 126, 392, 477
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	2 cut(s)	379, 455
TseI	GCWGC	2 cut(s)	170, 443
Tsp45I	GTSAC	2 cut(s)	379, 455
TspDTI	ATGAA	2 cut(s)	46, 210
TspRI	CASTG	1 cut(s)	202
Vha464I	CTTAAG	1 cut(s)	125
XapI	RAATTY	2 cut(s)	20, 269
XcmI	CCANNNNNNNNNTGG	1 cut(s)	393
XspI	CTAG	2 cut(s)	263, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.