Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005770

Physical Location & Seq

Genomic Coordinates Forward (+)

21657739 .. 21660424

Gene Structure 2686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023309

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAAGTCGGCGGCGGAGAGCTCAACCACCATTGCTGGCGTCAATGAGTCGTCGGCAACGCAGAAAAAGATACAGAGGCTAAGCCGAAACGCAGAAACGTACTTCTTCGTCAGGGAGGTGGAATTTGGTGGTGATGGGGATTATTCAGAAGATAGTTTCATCAATATTGTCAATGCTCATCTTGCCAATTCAATCGGAAATCTGCTTAACCGCACTCTGGGGCTTCTTAAGAAGAACTGCCAGTCTACTTTGGTAATTGATTCAAGTATCGCAGCTGAAGGAACTACATTCAAGGACACTGTGGAGAAGTTGGTTGAAAAAGCTCGGGTTGATTATGAAAACCTCTCACTATCATCAGCTTGTGAGGCTGTTCTTGAGATCAGCAATGCTGGAAATTCATACATGGATGGGCGTGCACCATGGTCTCTCTTTAAGCAAGGGGGTGCTGCAAGTGAAGCTGCTGCAAAGGACCTTGTGATAATATTAGAAGCAATGAGGATTATAGCTGTTGCATTATCCCCCGTCACACCAAGTTTAAGTTGGAGAATATATCGACAGCTTGGCTACTCAAAGGCTCAGTTTGATGCTGCTACCTGGAGTGACACCAGGTGGGGTGGGCTTAAAGGTGGTCAGGTCATGGCTCAACCTCAACCAATCTTTGCAAGGATTGAAAGGCAAACAGAAGAAGAAAATAGGGTCGAAGCACCCAAAAAGGTGAAAAAGAACAAGTTACCACAGTCTCAACAGGTGGTTGAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004825 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006431 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090567 GO:0099402 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g

Protein Analysis

254

Amino Acids

27.67

Weight (kDa)

6.65

Isoelectric Point (pI)

41.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1g	PF09334	21 - 73	1.6e-06	tRNA synthetases class I (M)
Anticodon_3	PF19303	92 - 230	9.7e-12	Anticodon binding domain of methionyl tRNA ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55400 AT3G55400
fragaria_vesca	FvH4_6g24170 FvH4_6g24170 FvH4_6g51210 FvH4_6g51210 FvH4_6g51210 FvH4_6g51210
malus_domestica	MD01G1125100.v1.1 MD07G1194800.v1.1
prunus_persica	Prupe.2G232400_v2.0.a1 Prupe.2G232400_v2.0.a1
pyrus_communis	pycom01g15130 pycom07g18350 pycom07g18360
rosa_chinensis	RchiOBHm_Chr3g0482991 RchiOBHm_Chr3g0483011
rosa_laevigata	RLG00000023307 RLG00000023309
rosa_multiflora	Rmu_sc0003351.1_g000014
rosa_roxburghii	Rroxscaffold_6G00398740
rosa_rugosa	Rorug03G0202800
rosa_samantha	Rh3AG251600 Rh3BG288100 Rh3CG285600 Rh3DG281300
rosa_wichuraiana	Rw3G022730 Rw3G022760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	245
AciI	CCGC	3 cut(s)	11, 14, 211
AcsI	RAATTY	2 cut(s)	122, 394
AcuI	CTGAAG	1 cut(s)	297
AcyI	GRCGYC	1 cut(s)	39
AdeI	CACNNNGTG	1 cut(s)	609
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	217
AflII	CTTAAG	1 cut(s)	227
AgsI	TTSAA	6 cut(s)	192, 264, 292, 317, 671, 755
AjnI	CCWGG	2 cut(s)	593, 605
AluBI	AGCT	8 cut(s)	21, 275, 323, 359, 458, 506, 559, 758
AluI	AGCT	8 cut(s)	21, 275, 323, 359, 458, 506, 559, 758
Alw21I	GWGCWC	2 cut(s)	23, 418
Alw26I	GTCTC	2 cut(s)	429, 744
Alw44I	GTGCAC	1 cut(s)	414
Ama87I	CYCGRG	1 cut(s)	324
ApaLI	GTGCAC	1 cut(s)	414
ApeKI	GCWGC	5 cut(s)	272, 446, 458, 461, 587
ApoI	RAATTY	2 cut(s)	122, 394
AspS9I	GGNCC	1 cut(s)	469
AsuHPI	GGTGA	2 cut(s)	143, 727
AvaI	CYCGRG	1 cut(s)	324
AvaII	GGWCC	1 cut(s)	469
BaeGI	GKGCMC	1 cut(s)	418
BanII	GRGCYC	1 cut(s)	23
Bbv12I	GWGCWC	2 cut(s)	23, 418
BbvI	GCAGC	5 cut(s)	284, 433, 445, 448, 574
BccI	CCATC	2 cut(s)	128, 401
BciT130I	CCWGG	2 cut(s)	595, 607
BcoDI	GTCTC	2 cut(s)	429, 744
BfrI	CTTAAG	1 cut(s)	227
BisI	GCNGC	6 cut(s)	12, 273, 447, 459, 462, 588
BlpI	GCTNAGC	1 cut(s)	80
BlsI	GCNGC	6 cut(s)	13, 274, 448, 460, 463, 589
Bme1390I	CCNGG	2 cut(s)	595, 607
Bme18I	GGWCC	1 cut(s)	469
BmeT110I	CYCGRG	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	469
BmrFI	CCNGG	2 cut(s)	595, 607
BmsI	GCATC	1 cut(s)	574
BpmI	CTGGAG	1 cut(s)	616
Bpu1102I	GCTNAGC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	395
BsaHI	GRCGYC	1 cut(s)	39
BsaI	GGTCTC	1 cut(s)	429
BsaJI	CCNNGG	1 cut(s)	419
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	241
Bse3DI	GCAATG	3 cut(s)	30, 391, 498
BseBI	CCWGG	2 cut(s)	595, 607
BseDI	CCNNGG	1 cut(s)	419
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMI	GCAATG	3 cut(s)	30, 391, 498
BseMII	CTCAG	1 cut(s)	590
BseNI	ACTGG	1 cut(s)	241
BseSI	GKGCMC	1 cut(s)	418
BseXI	GCAGC	5 cut(s)	284, 433, 445, 448, 574
BsiHKAI	GWGCWC	2 cut(s)	23, 418
BsiHKCI	CYCGRG	1 cut(s)	324
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	2 cut(s)	429, 744
Bso31I	GGTCTC	1 cut(s)	429
BsoBI	CYCGRG	1 cut(s)	324
Bsp1286I	GDGCHC	2 cut(s)	23, 418
Bsp143I	GATC	1 cut(s)	378
Bsp1720I	GCTNAGC	1 cut(s)	80
Bsp19I	CCATGG	1 cut(s)	419
BspACI	CCGC	3 cut(s)	11, 14, 211
BspCNI	CTCAG	1 cut(s)	589
BspTI	CTTAAG	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	429
BsrDI	GCAATG	3 cut(s)	30, 391, 498
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	419
BssMI	GATC	1 cut(s)	378
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	419
Bst2UI	CCWGG	2 cut(s)	595, 607
Bst4CI	ACNGT	2 cut(s)	301, 738
BstACI	GRCGYC	1 cut(s)	39
BstAFI	CTTAAG	1 cut(s)	227
BstC8I	GCNNGC	2 cut(s)	37, 414
BstDEI	CTNAG	2 cut(s)	80, 576
BstDSI	CCRYGG	1 cut(s)	419
BstF5I	GGATG	1 cut(s)	412
BstKTI	GATC	1 cut(s)	381
BstMAI	GTCTC	2 cut(s)	429, 744
BstMBI	GATC	1 cut(s)	378
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 365, 455
BstNI	CCWGG	2 cut(s)	595, 607
BstSCI	CCNGG	2 cut(s)	593, 605
BstSLI	GKGCMC	1 cut(s)	418
BstV1I	GCAGC	5 cut(s)	284, 433, 445, 448, 574
BtgI	CCRYGG	1 cut(s)	419
BtsCI	GGATG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	297
Cac8I	GCNNGC	2 cut(s)	37, 414
Cfr13I	GGNCC	1 cut(s)	469
CseI	GACGC	1 cut(s)	28
CsiI	ACCWGGT	1 cut(s)	605
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	3 cut(s)	403, 420, 637
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	2 cut(s)	80, 576
DpnI	GATC	1 cut(s)	380
DpnII	GATC	1 cut(s)	378
DraIII	CACNNNGTG	1 cut(s)	609
EciI	GGCGGA	1 cut(s)	29
Ecl136II	GAGCTC	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	419
Eco24I	GRGCYC	1 cut(s)	23
Eco31I	GGTCTC	1 cut(s)	429
Eco47I	GGWCC	1 cut(s)	469
Eco53kI	GAGCTC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	297
Eco88I	CYCGRG	1 cut(s)	324
EcoICRI	GAGCTC	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	469
EcoRII	CCWGG	2 cut(s)	593, 605
EcoT14I	CCWWGG	1 cut(s)	419
EcoT38I	GRGCYC	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	419
FaeI	CATG	3 cut(s)	406, 423, 640
FaiI	YATR	7 cut(s)	336, 400, 404, 421, 503, 550, 638
FatI	CATG	3 cut(s)	402, 419, 636
FblI	GTMKAC	1 cut(s)	245
Fnu4HI	GCNGC	6 cut(s)	12, 273, 447, 459, 462, 588
FokI	GGATG	1 cut(s)	419
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	6 cut(s)	12, 273, 447, 459, 462, 588
GluI	GCNGC	6 cut(s)	12, 273, 447, 459, 462, 588
GsuI	CTGGAG	1 cut(s)	616
HgaI	GACGC	1 cut(s)	28
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	3 cut(s)	406, 423, 640
HindIII	AAGCTT	1 cut(s)	756
HinfI	GANTC	2 cut(s)	47, 260
HphI	GGTGA	2 cut(s)	143, 727
Hpy166II	GTNNAC	2 cut(s)	246, 416
Hpy188I	TCNGA	2 cut(s)	148, 197
Hpy188III	TCNNGA	1 cut(s)	374
Hpy8I	GTNNAC	2 cut(s)	246, 416
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	2 cut(s)	301, 738
HpyCH4IV	ACGT	1 cut(s)	98
HpyCH4V	TGCA	5 cut(s)	416, 449, 464, 512, 662
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 365, 455
HpyF3I	CTNAG	2 cut(s)	80, 576
HpySE526I	ACGT	1 cut(s)	98
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	3 cut(s)	406, 423, 640
Kzo9I	GATC	1 cut(s)	378
Lsp1109I	GCAGC	5 cut(s)	284, 433, 445, 448, 574
LweI	GCATC	1 cut(s)	574
MabI	ACCWGGT	1 cut(s)	605
MaeII	ACGT	1 cut(s)	98
MaeIII	GTNAC	3 cut(s)	523, 599, 729
MalI	GATC	1 cut(s)	380
MboI	GATC	1 cut(s)	378
MboII	GAAGA	5 cut(s)	97, 161, 244, 695, 698
MhlI	GDGCHC	2 cut(s)	23, 418
MluCI	AATT	4 cut(s)	122, 187, 255, 394
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	521
MnlI	CCTC	6 cut(s)	69, 109, 353, 358, 489, 657
MseI	TTAA	6 cut(s)	207, 228, 432, 536, 621, 760
MspA1I	CMGCKG	1 cut(s)	275
MspCI	CTTAAG	1 cut(s)	227
MspR9I	CCNGG	2 cut(s)	595, 607
MvaI	CCWGG	2 cut(s)	595, 607
MwoI	GCNNNNNNNGC	3 cut(s)	182, 365, 455
NcoI	CCATGG	1 cut(s)	419
NdeII	GATC	1 cut(s)	378
NlaIII	CATG	3 cut(s)	406, 423, 640
NmuCI	GTSAC	2 cut(s)	523, 599
PfeI	GAWTC	1 cut(s)	260
PkrI	GCNGC	6 cut(s)	13, 274, 448, 460, 463, 589
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PpuMI	RGGWCCY	1 cut(s)	469
Psp124BI	GAGCTC	1 cut(s)	23
Psp5II	RGGWCCY	1 cut(s)	469
Psp6I	CCWGG	2 cut(s)	593, 605
PspGI	CCWGG	2 cut(s)	593, 605
PspPI	GGNCC	1 cut(s)	469
PspPPI	RGGWCCY	1 cut(s)	469
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SacI	GAGCTC	1 cut(s)	23
SaqAI	TTAA	6 cut(s)	207, 228, 432, 536, 621, 760
SatI	GCNGC	6 cut(s)	12, 273, 447, 459, 462, 588
Sau3AI	GATC	1 cut(s)	378
Sau96I	GGNCC	1 cut(s)	469
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	2 cut(s)	595, 607
SduI	GDGCHC	2 cut(s)	23, 418
SexAI	ACCWGGT	1 cut(s)	605
SfaNI	GCATC	1 cut(s)	574
SinI	GGWCC	1 cut(s)	469
SmlI	CTYRAG	2 cut(s)	227, 374
SmoI	CTYRAG	2 cut(s)	227, 374
Sse9I	AATT	4 cut(s)	122, 187, 255, 394
SsiI	CCGC	3 cut(s)	11, 14, 211
SspI	AATATT	2 cut(s)	166, 483
SstI	GAGCTC	1 cut(s)	23
StyD4I	CCNGG	2 cut(s)	593, 605
StyI	CCWWGG	1 cut(s)	419
TaaI	ACNGT	2 cut(s)	301, 738
TaiI	ACGT	1 cut(s)	101
TaqI	TCGA	2 cut(s)	553, 699
TasI	AATT	4 cut(s)	122, 187, 255, 394
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	6 cut(s)	207, 228, 432, 536, 621, 760
Tru9I	TTAA	6 cut(s)	207, 228, 432, 536, 621, 760
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	2 cut(s)	523, 599
TseI	GCWGC	5 cut(s)	272, 446, 458, 461, 587
Tsp45I	GTSAC	2 cut(s)	523, 599
TspDTI	ATGAA	4 cut(s)	17, 148, 351, 387
TspRI	CASTG	1 cut(s)	304
Vha464I	CTTAAG	1 cut(s)	227
VneI	GTGCAC	1 cut(s)	414
VpaK11BI	GGWCC	1 cut(s)	469
XapI	RAATTY	2 cut(s)	122, 394
XcmI	CCANNNNNNNNNTGG	1 cut(s)	537
XmiI	GTMKAC	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.