Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0005770

Physical Location & Seq

Genomic Coordinates Reverse (-)

28064976 .. 28065871

Gene Structure 896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G022730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGATTTGGTTCAAAAATTCGGGAAATCTGCTTAACCGCACTCTGGGGCTTCTTAAGAAGAACTGCCAATCTACTTTGGTAATTGATTCAAGTATCGCAGCTGAAGGAACTACATTCAAGGACACTGTGGAGAAGTTGGACCTTGTGATAATACTAGAAGAAATGAGGGTTATAGCTATTGCATTATCCCCTGTCACACCAAGTTTAAGTTGGAGAATATATCGACAGCTTGGCTACTCAAAGGATCAGTTTGATGCTGCTACCTGGAGTGACACCAGGTGGGGTGGGCTTAAAGGTGGTCAGGTCATGGCTCAACCTCAACCAATCTTTGCAAGGATTGAAAGCCAAACAGAAGGAGAAAATAGGGTCGAAGCACCCAAAAAGGTGCAAAAAGAACAAGTTACCGGAGTCTCAAGAGGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004825 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006431 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090567 GO:0099402 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00450 ko00970 map00450 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1g

Protein Analysis

141

Amino Acids

15.65

Weight (kDa)

9.13

Isoelectric Point (pI)

33.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55400 AT3G55400
fragaria_vesca	FvH4_6g24170 FvH4_6g24170 FvH4_6g51210 FvH4_6g51210 FvH4_6g51210 FvH4_6g51210
malus_domestica	MD01G1125100.v1.1 MD07G1194800.v1.1
prunus_persica	Prupe.2G232400_v2.0.a1 Prupe.2G232400_v2.0.a1
pyrus_communis	pycom01g15130 pycom07g18350 pycom07g18360
rosa_chinensis	RchiOBHm_Chr3g0482991 RchiOBHm_Chr3g0483011
rosa_laevigata	RLG00000023307 RLG00000023309
rosa_multiflora	Rmu_sc0003351.1_g000014
rosa_roxburghii	Rroxscaffold_6G00398740
rosa_rugosa	Rorug03G0202800
rosa_samantha	Rh3AG251600 Rh3BG288100 Rh3CG285600 Rh3DG281300
rosa_wichuraiana	Rw3G022730 Rw3G022760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	37
AclWI	GGATC	1 cut(s)	252
AcsI	RAATTY	1 cut(s)	16
AcuI	CTGAAG	1 cut(s)	123
AdeI	CACNNNGTG	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	43
AflII	CTTAAG	1 cut(s)	53
AgsI	TTSAA	4 cut(s)	13, 90, 118, 341
AjnI	CCWGG	2 cut(s)	263, 275
AluBI	AGCT	3 cut(s)	101, 176, 229
AluI	AGCT	3 cut(s)	101, 176, 229
Alw26I	GTCTC	1 cut(s)	415
AlwI	GGATC	1 cut(s)	252
ApeKI	GCWGC	2 cut(s)	98, 257
ApoI	RAATTY	1 cut(s)	16
AspS9I	GGNCC	1 cut(s)	139
AvaII	GGWCC	1 cut(s)	139
BbvI	GCAGC	2 cut(s)	110, 244
BciT130I	CCWGG	2 cut(s)	265, 277
BcoDI	GTCTC	1 cut(s)	415
BfaI	CTAG	1 cut(s)	155
BfrI	CTTAAG	1 cut(s)	53
BisI	GCNGC	2 cut(s)	99, 258
BlsI	GCNGC	2 cut(s)	100, 259
Bme1390I	CCNGG	2 cut(s)	265, 277
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	139
BmrFI	CCNGG	2 cut(s)	265, 277
BmsI	GCATC	1 cut(s)	244
BpmI	CTGGAG	1 cut(s)	286
BpuEI	CTTGAG	1 cut(s)	397
BsaWI	WCCGGW	1 cut(s)	404
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
BseBI	CCWGG	2 cut(s)	265, 277
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseXI	GCAGC	2 cut(s)	110, 244
BsiSI	CCGG	1 cut(s)	405
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	415
Bsp143I	GATC	1 cut(s)	244
BspACI	CCGC	1 cut(s)	37
BspPI	GGATC	1 cut(s)	252
BspTI	CTTAAG	1 cut(s)	53
BssMI	GATC	1 cut(s)	244
Bst2UI	CCWGG	2 cut(s)	265, 277
Bst4CI	ACNGT	1 cut(s)	127
BstAFI	CTTAAG	1 cut(s)	53
BstKTI	GATC	1 cut(s)	247
BstMAI	GTCTC	1 cut(s)	415
BstMBI	GATC	1 cut(s)	244
BstNI	CCWGG	2 cut(s)	265, 277
BstSCI	CCNGG	2 cut(s)	263, 275
BstV1I	GCAGC	2 cut(s)	110, 244
BtsIMutI	CAGTG	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	139
CsiI	ACCWGGT	1 cut(s)	275
CviAII	CATG	1 cut(s)	307
CviJI	RGCY	8 cut(s)	49, 101, 176, 229, 234, 289, 311, 345
CviKI_1	RGCY	8 cut(s)	49, 101, 176, 229, 234, 289, 311, 345
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
DraIII	CACNNNGTG	1 cut(s)	279
Eco47I	GGWCC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	123
EcoRII	CCWGG	2 cut(s)	263, 275
FaeI	CATG	1 cut(s)	310
FaiI	YATR	3 cut(s)	173, 220, 308
FatI	CATG	1 cut(s)	306
Fnu4HI	GCNGC	2 cut(s)	99, 258
Fsp4HI	GCNGC	2 cut(s)	99, 258
FspBI	CTAG	1 cut(s)	155
GluI	GCNGC	2 cut(s)	99, 258
GsuI	CTGGAG	1 cut(s)	286
HapII	CCGG	1 cut(s)	405
Hin1II	CATG	1 cut(s)	310
HinfI	GANTC	2 cut(s)	86, 408
HpaII	CCGG	1 cut(s)	405
Hpy188III	TCNNGA	2 cut(s)	21, 414
HpyAV	CCTTC	2 cut(s)	98, 347
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4V	TGCA	3 cut(s)	182, 332, 388
Hsp92II	CATG	1 cut(s)	310
Kzo9I	GATC	1 cut(s)	244
LpnPI	CCDG	8 cut(s)	29, 204, 250, 262, 277, 287, 289, 418
Lsp1109I	GCAGC	2 cut(s)	110, 244
LweI	GCATC	1 cut(s)	244
MabI	ACCWGGT	1 cut(s)	275
MaeI	CTAG	1 cut(s)	155
MaeIII	GTNAC	3 cut(s)	193, 269, 400
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	2 cut(s)	70, 170
MluCI	AATT	2 cut(s)	16, 81
MlyI	GAGTC	1 cut(s)	417
MmeI	TCCRAC	2 cut(s)	117, 191
MnlI	CCTC	3 cut(s)	159, 327, 410
MseI	TTAA	4 cut(s)	33, 54, 206, 291
MspA1I	CMGCKG	1 cut(s)	101
MspCI	CTTAAG	1 cut(s)	53
MspI	CCGG	1 cut(s)	405
MspR9I	CCNGG	2 cut(s)	265, 277
MvaI	CCWGG	2 cut(s)	265, 277
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	1 cut(s)	310
NmuCI	GTSAC	2 cut(s)	193, 269
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	100, 259
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
Psp6I	CCWGG	2 cut(s)	263, 275
PspGI	CCWGG	2 cut(s)	263, 275
PspPI	GGNCC	1 cut(s)	139
PvuII	CAGCTG	1 cut(s)	101
SaqAI	TTAA	4 cut(s)	33, 54, 206, 291
SatI	GCNGC	2 cut(s)	99, 258
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	1 cut(s)	139
SchI	GAGTC	1 cut(s)	417
ScrFI	CCNGG	2 cut(s)	265, 277
SexAI	ACCWGGT	1 cut(s)	275
SfaNI	GCATC	1 cut(s)	244
SinI	GGWCC	1 cut(s)	139
SmlI	CTYRAG	2 cut(s)	53, 412
SmoI	CTYRAG	2 cut(s)	53, 412
Sse9I	AATT	2 cut(s)	16, 81
SsiI	CCGC	1 cut(s)	37
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	2 cut(s)	263, 275
TaaI	ACNGT	1 cut(s)	127
TaqI	TCGA	2 cut(s)	223, 369
TasI	AATT	2 cut(s)	16, 81
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	4 cut(s)	33, 54, 206, 291
Tru9I	TTAA	4 cut(s)	33, 54, 206, 291
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	2 cut(s)	193, 269
TseI	GCWGC	2 cut(s)	98, 257
Tsp45I	GTSAC	2 cut(s)	193, 269
TspRI	CASTG	1 cut(s)	130
Vha464I	CTTAAG	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	1 cut(s)	16
XcmI	CCANNNNNNNNNTGG	1 cut(s)	207
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.