Prupe.2G232400_v2.0.a1

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
25603014 .. 25607832
4819 bp
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UTR
Exon/CDS
Intron
Prupe.2G232400.1

Sequence Viewer

Length: 1812 bp
ATGGCGGCAGCCGCAGCGAGAATAAACTTCTTCTTAAACCCCATAAATCCCCTCAACTCCAAAGCCACCACCCATCTCAGGACCCGCCTCCACTTTCAGCCATCAAGAAGAAGACCCAGAGCTACGTCGTTTTGCACGCGTGCCTCCGCTACTCCCCTCCACGACGAAGCCGCCGCCAGTGACCCTTTTGTCCTCACCACTCCGCTTTATTACGTGAATGCCCCTCCTCATTTGGGCAGCGCTTACACTACCATCGCTGCCGATGCCATTGCTCGCTTTCATAGGCTGTTGGGTAAGAAGGTCATCTTCATCACTGGCACCGATGAGCATGGTGAAAAGATTGCCACTGCAGCTGCTGCTAGTGCCTCCACACCAGCTCAACACTGTGACATCATTTCACAGTCTTACATATCACTCTGGAAAAACTTAGATATAGCTTATGACAAATTCATTCGAACAACTGATCCCAAGCATGAAGCAATTGTGAAGGAGTTTTACTCAAGGGTTCTTGCCAATGGAGACATTTACAGGGCTGACTATGAGGGACTTTATTGTATCAATTGTGAGGAGTATAAGGATGAGAAAGAACTGCTTGATAACAACTGTTGCTCTACGCACCTAAAGCCATGTGTTGCACGGAAAGAGGATAATTACTTCTTTGCATTGTCCAAGTATCAAAAGTCGTTGGAAGAAACTTTGGCAAAAAATCCGAATTTTGTACAGCCTTCATTCCGTCTTAATGAGGTTCAAAGTTGGATTAGAGGTGGCCTAAGAGACTTTTCCATTTCTCGAGCATTAGTGGATTGGGGCATCCCTGTTCCTAATGATAGCAAGCAAACAATATATGTTTGGTTTGATGCTTTACTGGGTTATATATCAGCACTATCTGAAGATACGGAGCAACCTGATTTGGAAAGAGCCGTTTCATCAGGGTGGCCTGCCTCGCTACACTTGATTGGCAAGGATATTTTACGTTTCCATGCAGTCTACTGGCCAGCTATGCTGATGTCTGCTGGACTAGGCCTTCCTAAGATGGTGTTTGGACATGGATTCTTGACAAAGGATGGCATGAAGATGGGGAAGTCGCTAGGCAATACAATTGAACCAAATGATTTGGTTCATAAATTCGGGTCAGATGCGGTCAGGTACTTCTTCCTCAGGGAGGTGGAATTTGGAAATGACGGGGACTATTCGGAAGATCGTTTCATCAATATTGTCAATGCTCATCTTGCCAATTCAATTGGAAATCTCCTTAACCGTACTCTGGGACTTCTTAAGAAGAACTGCCAATCAACTTTGGTGGTTGATTCAAGTATTGCAGCTGAAGGAATTACATTTAAGGACACTGTGGAGAAGTTGGTGGAAAAAGCTCGGGTTCAGTATGGAAACCTCTCGCTATCATCAGCTTGTGAGGCTGTGCTAGAGATCAGCAATGCTGGAAATTTATACATGGATGAGCGCGCACCATGGTCTCTCTTTAAGCAAGGGGGTGCTGCTTCTGAAGCTGCTGCAAAGGACCTTGTGATAATATTAGAAGCAATGAGGATTATAGCAGTTGCATTATCACCCGTCACGCCGAGCTTATCTTGGAGAATATACGGACAGCTTGGCTACTCAAAGGAACGGTTTGATGCTGTTACCTGGAGCGACACCAAGTGGGGTGGGCTAAAGAGTGGTCAGGTCATGGCGCAGCCTACACCAATCTTTGCAAGGATTGAAAACCCAACAGAAGGGCAAAATGCGGTTGAAGCACCTAAAAAGGAAGTCAAGAAGGACAAGCTACCTCAAGCCAAAAGGGTGGTGGAAGCGTAA

Protein Analysis

604

Amino Acids

66.98

Weight (kDa)

7.59

Isoelectric Point (pI)

30.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 188
AccB1I GGYRCC 1 cut(s) 317
AccI GTMKAC 1 cut(s) 987
AccII CGCG 2 cut(s) 139, 1461
AciI CCGC 9 cut(s) 5, 12, 85, 147, 171, 174, 203, 1139, 1742
AclWI GGATC 1 cut(s) 458
AcoI YGGCCR 1 cut(s) 992
AcsI RAATTY 5 cut(s) 446, 712, 1124, 1169, 1441
AcuI CTGAAG 3 cut(s) 909, 1344, 1521
AdeI CACNNNGTG 1 cut(s) 1656
AfaI GTAC 3 cut(s) 720, 1148, 1261
AfeI AGCGCT 1 cut(s) 241
AfiI CCNNNNNNNGG 5 cut(s) 78, 233, 1162, 1264, 1730
AflII CTTAAG 1 cut(s) 1274
AflIII ACRYGT 1 cut(s) 137
AgsI TTSAA 6 cut(s) 749, 1103, 1239, 1311, 1718, 1748
AjnI CCWGG 1 cut(s) 1640
AloI GAACNNNNNNTCC 2 cut(s) 448, 480
Alw26I GTCTC 3 cut(s) 513, 768, 1476
AlwI GGATC 1 cut(s) 458
AlwNI CAGNNNCTG 1 cut(s) 356
Ama87I CYCGRG 2 cut(s) 789, 1371
Aor51HI AGCGCT 1 cut(s) 241
AoxI GGCC 4 cut(s) 766, 935, 992, 1021
ApoI RAATTY 5 cut(s) 446, 712, 1124, 1169, 1441
AspLEI GCGC 4 cut(s) 242, 1461, 1463, 1690
AspS9I GGNCC 2 cut(s) 81, 1516
AsuHPI GGTGA 3 cut(s) 187, 344, 1557
AsuII TTCGAA 1 cut(s) 454
AvaI CYCGRG 2 cut(s) 789, 1371
AvaII GGWCC 2 cut(s) 81, 1516
AxyI CCTNAGG 1 cut(s) 1157
BalI TGGCCA 1 cut(s) 994
BanI GGYRCC 1 cut(s) 317
BarI GAAGNNNNNNTAC 2 cut(s) 479, 511
BbsI GAAGAC 1 cut(s) 118
BccI CCATC 6 cut(s) 81, 109, 260, 1027, 1058, 1069
BceAI ACGGC 1 cut(s) 905
BcgI CGANNNNNNTGC 2 cut(s) 251, 285
BciT130I CCWGG 1 cut(s) 1642
BcoDI GTCTC 3 cut(s) 513, 768, 1476
BfaI CTAG 4 cut(s) 360, 1019, 1088, 1421
BfmI CTRYAG 1 cut(s) 348
BfoI RGCGCY 1 cut(s) 243
BfrI CTTAAG 1 cut(s) 1274
Bme1390I CCNGG 1 cut(s) 1642
Bme18I GGWCC 2 cut(s) 81, 1516
BmeT110I CYCGRG 2 cut(s) 789, 1371
BmgT120I GGNCC 2 cut(s) 81, 1516
BmiI GGNNCC 2 cut(s) 83, 319
BmrFI CCNGG 1 cut(s) 1642
BmrI ACTGGG 1 cut(s) 875
BmsI GCATC 5 cut(s) 253, 819, 847, 1126, 1621
BmuI ACTGGG 1 cut(s) 875
BpiI GAAGAC 1 cut(s) 118
BplI GAGNNNNNCTC 2 cut(s) 482, 514
BpmI CTGGAG 1 cut(s) 1663
Bpu14I TTCGAA 1 cut(s) 454
BpuEI CTTGAG 2 cut(s) 484, 1770
BsaAI YACGTR 1 cut(s) 214
BsaI GGTCTC 1 cut(s) 1476
BsaJI CCNNGG 1 cut(s) 1466
Bsc4I CCNNNNNNNGG 5 cut(s) 78, 233, 1162, 1264, 1730
Bse1I ACTGG 4 cut(s) 177, 319, 870, 995
Bse21I CCTNAGG 1 cut(s) 1157
Bse3DI GCAATG 3 cut(s) 267, 1438, 1545
BseBI CCWGG 1 cut(s) 1642
BseDI CCNNGG 1 cut(s) 1466
BseGI GGATG 4 cut(s) 583, 810, 1069, 1459
BseLI CCNNNNNNNGG 5 cut(s) 78, 233, 1162, 1264, 1730
BseMI GCAATG 3 cut(s) 267, 1438, 1545
BseMII CTCAG 2 cut(s) 91, 1171
BseNI ACTGG 4 cut(s) 177, 319, 870, 995
BsePI GCGCGC 1 cut(s) 1459
BseRI GAGGAG 2 cut(s) 216, 581
Bsh1236I CGCG 2 cut(s) 139, 1461
BshFI GGCC 4 cut(s) 768, 937, 994, 1023
BshNI GGYRCC 1 cut(s) 317
BsiHKCI CYCGRG 2 cut(s) 789, 1371
BslFI GGGAC 3 cut(s) 558, 1199, 1281
BslI CCNNNNNNNGG 5 cut(s) 78, 233, 1162, 1264, 1730
BsmAI GTCTC 3 cut(s) 513, 768, 1476
BsmFI GGGAC 3 cut(s) 558, 1199, 1281
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 4 cut(s) 768, 937, 994, 1023
Bso31I GGTCTC 1 cut(s) 1476
BsoBI CYCGRG 2 cut(s) 789, 1371
Bsp119I TTCGAA 1 cut(s) 454
Bsp1407I TGTACA 1 cut(s) 718
Bsp143I GATC 3 cut(s) 463, 1198, 1425
Bsp19I CCATGG 1 cut(s) 1466
BspACI CCGC 9 cut(s) 5, 12, 85, 147, 171, 174, 203, 1139, 1742
BspANI GGCC 4 cut(s) 768, 937, 994, 1023
BspCNI CTCAG 2 cut(s) 90, 1170
BspFNI CGCG 2 cut(s) 139, 1461
BspLI GGNNCC 2 cut(s) 83, 319
BspMAI CTGCAG 1 cut(s) 352
BspPI GGATC 1 cut(s) 458
BspT104I TTCGAA 1 cut(s) 454
BspT107I GGYRCC 1 cut(s) 317
BspTI CTTAAG 1 cut(s) 1274
BspTNI GGTCTC 1 cut(s) 1476
BsrDI GCAATG 3 cut(s) 267, 1438, 1545
BsrGI TGTACA 1 cut(s) 718
BsrI ACTGG 4 cut(s) 177, 319, 870, 995
BssECI CCNNGG 1 cut(s) 1466
BssHII GCGCGC 1 cut(s) 1459
BssMI GATC 3 cut(s) 463, 1198, 1425
BssT1I CCWWGG 1 cut(s) 1466
Bst2UI CCWGG 1 cut(s) 1642
Bst4CI ACNGT 6 cut(s) 386, 402, 605, 1259, 1348, 1626
BstAFI CTTAAG 1 cut(s) 1274
BstAPI GCANNNNNTGC 1 cut(s) 356
BstAUI TGTACA 1 cut(s) 718
BstBAI YACGTR 1 cut(s) 214
BstBI TTCGAA 1 cut(s) 454
BstC8I GCNNGC 7 cut(s) 137, 141, 274, 833, 939, 996, 1461
BstDEI CTNAG 5 cut(s) 77, 427, 770, 1029, 1157
BstDSI CCRYGG 1 cut(s) 1466
BstENI CCTNNNNNAGG 1 cut(s) 1160
BstF5I GGATG 4 cut(s) 583, 810, 1069, 1459
BstFNI CGCG 2 cut(s) 139, 1461
BstH2I RGCGCY 1 cut(s) 243
BstHHI GCGC 4 cut(s) 242, 1461, 1463, 1690
BstKTI GATC 3 cut(s) 466, 1201, 1428
BstMAI GTCTC 3 cut(s) 513, 768, 1476
BstMBI GATC 3 cut(s) 463, 1198, 1425
BstNI CCWGG 1 cut(s) 1642
BstSCI CCNGG 1 cut(s) 1640
BstSFI CTRYAG 1 cut(s) 348
BstUI CGCG 2 cut(s) 139, 1461
BstV2I GAAGAC 1 cut(s) 118
BstXI CCANNNNNNTGG 1 cut(s) 1798
Bsu36I CCTNAGG 1 cut(s) 1157
BsuRI GGCC 4 cut(s) 768, 937, 994, 1023
BtgI CCRYGG 1 cut(s) 1466
BtgZI GCGATG 1 cut(s) 238
BtsCI GGATG 4 cut(s) 583, 810, 1069, 1459
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 5 cut(s) 184, 312, 345, 382, 1344
Cac8I GCNNGC 7 cut(s) 137, 141, 274, 833, 939, 996, 1461
CaiI CAGNNNCTG 1 cut(s) 356
CfoI GCGC 4 cut(s) 242, 1461, 1463, 1690
Cfr13I GGNCC 2 cut(s) 81, 1516
Csp6I GTAC 3 cut(s) 719, 1147, 1260
CspCI CAANNNNNGTGG 4 cut(s) 1281, 1316, 1642, 1677
CviAII CATG 9 cut(s) 329, 473, 627, 980, 1046, 1069, 1450, 1467, 1684
CviQI GTAC 3 cut(s) 719, 1147, 1260
DdeI CTNAG 5 cut(s) 77, 427, 770, 1029, 1157
DpnI GATC 3 cut(s) 465, 1200, 1427
DpnII GATC 3 cut(s) 463, 1198, 1425
DraIII CACNNNGTG 1 cut(s) 1656
DrdI GACNNNNNNGTC 1 cut(s) 188
DseDI GACNNNNNNGTC 1 cut(s) 188
EaeI YGGCCR 1 cut(s) 992
Eco130I CCWWGG 1 cut(s) 1466
Eco147I AGGCCT 1 cut(s) 1023
Eco31I GGTCTC 1 cut(s) 1476
Eco47I GGWCC 2 cut(s) 81, 1516
Eco47III AGCGCT 1 cut(s) 241
Eco57I CTGAAG 3 cut(s) 909, 1344, 1521
Eco81I CCTNAGG 1 cut(s) 1157
Eco88I CYCGRG 2 cut(s) 789, 1371
EcoNI CCTNNNNNAGG 1 cut(s) 1160
EcoO109I RGGNCCY 2 cut(s) 81, 1516
EcoRII CCWGG 1 cut(s) 1640
EcoT14I CCWWGG 1 cut(s) 1466
ErhI CCWWGG 1 cut(s) 1466
FaeI CATG 9 cut(s) 332, 476, 630, 983, 1049, 1072, 1453, 1470, 1687
FalI AAGNNNNNCTT 4 cut(s) 290, 322, 576, 608
FaqI GGGAC 3 cut(s) 558, 1199, 1281
FatI CATG 9 cut(s) 328, 472, 626, 979, 1045, 1068, 1449, 1466, 1683
FauI CCCGC 1 cut(s) 92
FblI GTMKAC 1 cut(s) 987
FokI GGATG 4 cut(s) 590, 797, 1076, 1466
FspBI CTAG 4 cut(s) 360, 1019, 1088, 1421
GlaI GCGC 4 cut(s) 241, 1460, 1462, 1689
GsuI CTGGAG 1 cut(s) 1663
HaeII RGCGCY 1 cut(s) 243
HaeIII GGCC 4 cut(s) 768, 937, 994, 1023
HhaI GCGC 4 cut(s) 242, 1461, 1463, 1690
Hin1II CATG 9 cut(s) 332, 476, 630, 983, 1049, 1072, 1453, 1470, 1687
Hin6I GCGC 4 cut(s) 240, 1459, 1461, 1688
HinP1I GCGC 4 cut(s) 240, 1459, 1461, 1688
HinfI GANTC 2 cut(s) 1050, 1307
HphI GGTGA 3 cut(s) 187, 344, 1557
Hpy166II GTNNAC 1 cut(s) 988
Hpy188I TCNGA 5 cut(s) 711, 889, 1135, 1195, 1501
Hpy188III TCNNGA 6 cut(s) 79, 105, 418, 789, 1054, 1768
Hpy8I GTNNAC 1 cut(s) 988
Hpy99I CGWCG 2 cut(s) 130, 167
HpyAV CCTTC 7 cut(s) 292, 481, 735, 1034, 1319, 1724, 1765
HpyCH4III ACNGT 6 cut(s) 386, 402, 605, 1259, 1348, 1626
HpyCH4IV ACGT 3 cut(s) 125, 213, 973
HpyCH4V TGCA 9 cut(s) 135, 350, 635, 662, 983, 1319, 1511, 1559, 1709
HpyF3I CTNAG 5 cut(s) 77, 427, 770, 1029, 1157
HpySE526I ACGT 3 cut(s) 125, 213, 973
Hsp92II CATG 9 cut(s) 332, 476, 630, 983, 1049, 1072, 1453, 1470, 1687
HspAI GCGC 4 cut(s) 240, 1459, 1461, 1688
Kzo9I GATC 3 cut(s) 463, 1198, 1425
LmnI GCTCC 2 cut(s) 898, 1644
LweI GCATC 5 cut(s) 253, 819, 847, 1126, 1621
MaeI CTAG 4 cut(s) 360, 1019, 1088, 1421
MaeII ACGT 3 cut(s) 125, 213, 973
MaeIII GTNAC 4 cut(s) 179, 386, 1570, 1636
MalI GATC 3 cut(s) 465, 1200, 1427
MboI GATC 3 cut(s) 463, 1198, 1425
MfeI CAATTG 4 cut(s) 480, 559, 1098, 1239
MlsI TGGCCA 1 cut(s) 994
MluI ACGCGT 1 cut(s) 137
MluNI TGGCCA 1 cut(s) 994
MmeI TCCRAC 2 cut(s) 666, 734
Mox20I TGGCCA 1 cut(s) 994
MscI TGGCCA 1 cut(s) 994
MseI TTAA 6 cut(s) 35, 738, 1254, 1275, 1338, 1479
MslI CAYNNNNRTG 2 cut(s) 931, 1073
Msp20I TGGCCA 1 cut(s) 994
MspA1I CMGCKG 2 cut(s) 353, 1322
MspCI CTTAAG 1 cut(s) 1274
MspR9I CCNGG 1 cut(s) 1642
MunI CAATTG 4 cut(s) 480, 559, 1098, 1239
Mva1269I GAATGC 1 cut(s) 223
MvaI CCWGG 1 cut(s) 1642
MvnI CGCG 2 cut(s) 139, 1461
NcoI CCATGG 1 cut(s) 1466
NdeII GATC 3 cut(s) 463, 1198, 1425
NlaIII CATG 9 cut(s) 332, 476, 630, 983, 1049, 1072, 1453, 1470, 1687
NlaIV GGNNCC 2 cut(s) 83, 319
NmeAIII GCCGAG 1 cut(s) 1602
NmuCI GTSAC 3 cut(s) 179, 386, 1570
NspV TTCGAA 1 cut(s) 454
PaeR7I CTCGAG 1 cut(s) 789
PauI GCGCGC 1 cut(s) 1459
PceI AGGCCT 1 cut(s) 1023
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 1050, 1307
Ppu21I YACGTR 1 cut(s) 214
PpuMI RGGWCCY 2 cut(s) 81, 1516
Psp5II RGGWCCY 2 cut(s) 81, 1516
Psp6I CCWGG 1 cut(s) 1640
PspGI CCWGG 1 cut(s) 1640
PspN4I GGNNCC 2 cut(s) 83, 319
PspPI GGNCC 2 cut(s) 81, 1516
PspPPI RGGWCCY 2 cut(s) 81, 1516
PstI CTGCAG 1 cut(s) 352
PstNI CAGNNNCTG 1 cut(s) 356
PteI GCGCGC 1 cut(s) 1459
PvuII CAGCTG 2 cut(s) 353, 1322
RsaI GTAC 3 cut(s) 720, 1148, 1261
RsaNI GTAC 3 cut(s) 719, 1147, 1260
RseI CAYNNNNRTG 2 cut(s) 931, 1073
SaqAI TTAA 6 cut(s) 35, 738, 1254, 1275, 1338, 1479
Sau3AI GATC 3 cut(s) 463, 1198, 1425
Sau96I GGNCC 2 cut(s) 81, 1516
ScrFI CCNGG 1 cut(s) 1642
SfaNI GCATC 5 cut(s) 253, 819, 847, 1126, 1621
SfcI CTRYAG 1 cut(s) 348
Sfr274I CTCGAG 1 cut(s) 789
SfuI TTCGAA 1 cut(s) 454
SinI GGWCC 2 cut(s) 81, 1516
SlaI CTCGAG 1 cut(s) 789
SmiMI CAYNNNNRTG 2 cut(s) 931, 1073
SmlI CTYRAG 4 cut(s) 499, 789, 1274, 1785
SmoI CTYRAG 4 cut(s) 499, 789, 1274, 1785
SseBI AGGCCT 1 cut(s) 1023
SsiI CCGC 9 cut(s) 5, 12, 85, 147, 171, 174, 203, 1139, 1742
SspI AATATT 2 cut(s) 1213, 1530
SspMI CTAG 4 cut(s) 360, 1019, 1088, 1421
StuI AGGCCT 1 cut(s) 1023
StyD4I CCNGG 1 cut(s) 1640
StyI CCWWGG 1 cut(s) 1466
TaaI ACNGT 6 cut(s) 386, 402, 605, 1259, 1348, 1626
TaiI ACGT 3 cut(s) 128, 216, 976
TaqI TCGA 2 cut(s) 454, 790
TatI WGTACW 1 cut(s) 718
TauI GCSGC 4 cut(s) 8, 14, 173, 176
TfiI GAWTC 2 cut(s) 1050, 1307
Tru1I TTAA 6 cut(s) 35, 738, 1254, 1275, 1338, 1479
Tru9I TTAA 6 cut(s) 35, 738, 1254, 1275, 1338, 1479
TscAI CASTG 5 cut(s) 184, 319, 352, 389, 1351
TseFI GTSAC 3 cut(s) 179, 386, 1570
Tsp45I GTSAC 3 cut(s) 179, 386, 1570
TspDTI ATGAA 9 cut(s) 269, 298, 439, 489, 717, 915, 1085, 1109, 1195
TspGWI ACGGA 4 cut(s) 652, 722, 911, 1614
TspRI CASTG 5 cut(s) 184, 319, 352, 389, 1351
Vha464I CTTAAG 1 cut(s) 1274
VpaK11BI GGWCC 2 cut(s) 81, 1516
XagI CCTNNNNNAGG 1 cut(s) 1160
XapI RAATTY 5 cut(s) 446, 712, 1124, 1169, 1441
XcmI CCANNNNNNNNNTGG 1 cut(s) 1798
XhoI CTCGAG 1 cut(s) 789
XmiI GTMKAC 1 cut(s) 987
XspI CTAG 4 cut(s) 360, 1019, 1088, 1421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.